Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F17 I0 R1	109	78.2	1797446	84.3%	1515246	230.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
JC	NC_000913	3,525,959	+GGATCA	44.8%	coding (191/561 nt)	nudE ←	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3525959	55 (0.830)	46 (0.670) +GGATCA	29/398	NT	44.8%	coding (191/561 nt)	nudE	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase
*	?	NC_000913	3525960 =	58 (0.820)	46 (0.670) +GGATCA	29/398	NT	44.8%	coding (190/561 nt)	nudE	adenosine nucleotide hydrolase; Ap3A/Ap2A/ADP‑ribose/NADH hydrolase

TCTGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525722‑3525959

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTCATCGTGGGATCTATGCTGTGAAATCAGCGGTTATTGTG  >  NC_000913/3525960‑3526185

                                                                                                                                                                                                                                              ||||||

TCTGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTCGGAATTCGCG                                                                                                                                                                                                                                         >  1:82791/1‑239

  gtgtttATCCCCTTCCAGGTGTTCCGGGTAGGAGTCTTGCCCTACCACGATATTCATTTTGCTGGAAAAGTTAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGA                                                                                                                                                                                                                                       <  2:36884/233‑1

  TGGCTTATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGA                                                                                                                                                                                                                                       <  1:777449/239‑1

  TGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGCTCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGG                                                                                                                                                                                                                                        >  1:798622/1‑238

  TGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGA                                                                                                                                                                                                                                       <  1:333561/239‑1

   GGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGAc                                                                                                                                                                                                                                      >  1:597465/1‑238

   GGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGAT                                                                                                                                                                                                                                      <  1:862599/239‑1

   GGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCCTGCGCTACCAAGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGAT                                                                                                                                                                                                                                      <  1:7472/239‑1

        aaccCCTTCCAGTGATTCCGGGTAGGGTTCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGTCGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCTGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGA                                                                                                                                                                                                                                 <  2:335066/235‑1

         TCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGCCGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGAT                                                                                                                                                                                                                                >  2:865720/1‑239

             CTTCCAGTGATTCCGGGTAGAGATCGTGCTCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGG                                                                                                                                                                                                                            <  1:394549/239‑1

              ttcccggtATTCCGGGTAGAGATCGTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTTCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGA                                                                                                                                                                                                                           <  1:193477/231‑1

               TCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATAGTCAGTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGAT                                                                                                                                                                                                                          <  1:380284/239‑1

                    TGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGT                                                                                                                                                                                                                     >  1:365324/1‑239

                       TTCCGGGTTGAGACCTTGGCGTACCACGATATTCATTTTGCTGGAAAAGTAAGAAGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGA                                                                                                                                                                                                                   <  2:478112/238‑1

                                  GATCTTTCTCTTCCCCGTTTTTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAAT                                                                                                                                                                                                        <  2:390709/238‑1

                                      TTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCAACTGCGTATTCCCGAATCAGGATCAGGATCAGGTGATCGTCCACAATCGGC                                                                                                                                                                                                    >  1:223960/1‑238

                                       TGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCCCAATCGCCAC                                                                                                                                                                                                  >  1:768318/1‑239

                                             tCCACTATATTCATTTTTAGGGAAAAGTAAGCCGGTGGCATGCTGGGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCAT                                                                                                                                                                                            <  2:535886/238‑1

                                             ACCCCGAAATTCATTTTTCTGCAAAAGTAATGCCGTGACATGCTTAGCTGCTTCAAAAAAGTCAGATTGTGCTCTCCAAATCCAACCTCGTCTTGTAGCTCGCGGTTAGCTGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTGCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCAT                                                                                                                                                                                            <  2:723493/239‑1

                                             ACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTTCGAATTCGCGGACCAGGATCAGAATCAGGTGATCGTCCACAATCGGgcaaatcac                                                                                                                                                                                            >  2:265666/1‑230

                                                      TTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTT                                                                                                                                                                                    >  1:422154/1‑238

                                                          TTTTTCTGGAAAAGTAAGACGGTTCCCTTCTGACTTTCTTCAAAAAAGTCAGATCTTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGG                                                                                                                                                                               <  2:457483/239‑1

                                                               CTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGT                                                                                                                                                                          >  1:705994/1‑239

                                                                    AAAGTAAGCCGGTTCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCCTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGA                                                                                                                                                                      <  1:188774/238‑1

                                                                         aaggccGTGCCATGCTGAGATTCTTAAAAAAAGGCAGAGCGTTCGCCCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGCCGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATGCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATT                                                                                                                                                                <  2:768318/233‑1

                                                                                 GCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCCTA                                                                                                                                                        >  1:176618/1‑239

                                                                                          AGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCG                                                                                                                                               <  1:370432/239‑1

                                                                                          AGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGGGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACCCC                                                                                                                                                >  1:331649/1‑238

                                                                                          AGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGA                                                                                                                                                                                                                                       >  2:636324/1‑151

                                                                                          AGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTGTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGA                                                                                                                                                                                                                                       <  1:636324/151‑1

                                                                                          AGCTTCTTCAAAAAAGACAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACGGCGTATTCCCCGATCCGGATCAGGATCGGGTGACTGTCCACCATCGGCACACTCATCACGGCCTCCGAGTTGGTAGGAGGCCTTCGTTCATAAAAAAGCCG                                                                                                                                               >  2:793061/1‑239

                                                                                               CTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACG                                                                                                                                           >  1:868905/1‑238

                                                                                                       aaggtAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTCGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTG                                                                                                                                  <  1:527078/234‑1

                                                                                                                   TCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCC                                                                                                                      >  1:577436/1‑239

                                                                                                                                 ACCTCCTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACCCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGT                                                                                                        <  1:610191/239‑1

                                                                                                                                             AGCCCGCTGTTTGCGGTTTCGTAACCGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCAAATTCTTTGGATCCAGTTCCCACTGCGTGTCAGCGGATCAGGATTAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGA                                                                                            <  2:577436/239‑1

                                                                                                                                              GCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATTACTGCTTCCCGG                                                                                                                                                                               >  1:597977/1‑155

                                                                                                                                              GCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATTACTGCTTCCCGG                                                                                                                                                                               <  2:597977/155‑1

                                                                                                                                                      ttgGCGGCTTCGTAGACGCTTTCCCCCGGTGTAAATTATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCCGTGCGTATTTGCGGATCAGGATCAGGATCCGGTGATCGTCCACAATCGGCACAATCACCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTA                                                                                    <  1:54265/235‑1

                                                                                                                                                                   AGACGTTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTTAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATT                                                                       <  1:664192/238‑1

                                                                                                                                                                      ccCTTTCCCCAGGATCATTTAATCCTTTCGAAAACACTAATTCGTAGAGTTCAGTTCCCACTGCTTATTCCCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCCTCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAG                                                                    <  2:176618/236‑1

                                                                                                                                                                      CGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGCGGATCAGGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAG                                                                    <  1:865720/238‑1

                                                                                                                                                                                      tatttactCTTTCGAAAAACCAAATTCGTGGGGTTCAGTTCCCACTGGCTTTTCCGGTACAAGGTTCCGGATCAGGTGTTCGTCCCCAATCCGCCCAATCATCACTGCTTCCCGGTTGGTTTGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTA                                                   <  2:650573/231‑1

                                                                                                                                                                                      AATTATACCTTTCGAAAACCCTATTTTTTAGGATTCAGTTCCCACTGCGTATGCGCGGATCAGGATCAGGGTCAGGTGATCGTCCACAATCTGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTA                                                   <  2:331649/239‑1

                                                                                                                                                                                                TTCGAAAAACCTAATTCGTAGGATTCAGTTCCCTCTGCGTATTCGCGGATCAGGATCAGGATCAGGTTATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCT                                         <  1:157915/239‑1

                                                                                                                                                                                                                                       TATTCCGGGATCAGGTTCAGGATCGGGGTATCGTCCACAACCGGCCCAATCAGCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTCATCGTGGGATCTATGCTGTGAAATCAGCGGTTATTGTG  <  2:705994/239‑1

                                                                                                                                                                                                                                        tgtccCGGATCAGGTACAGGATCAGGTGATCGCCACCAAACGGAACAACCATCCCTTCTTCCCGGTTGTGTGGGCGCATTCGTTCATAAACCCCCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTCATCGTGGGATCTATGCTGTGAAATCAGCGGTTATTGTG  <  2:868905/233‑1

                                                                                                                                                                                                                                        ATTCGCGGATCAGGATCCGGATCAGGTGATCGTCCACAATCGGCCCAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTCATCGTGGGATCTATGCTGTGAAATCAGCGGTTATTGTG  <  1:858080/238‑1

                                                                                                                                                                                                                                              ||||||

TCTGGCTCATCGCCTTCCAGTGATTCCGGGTAGAGATCTTGCGCTACCACGATATTCATTTTGCTGGAAAAGTAAGACGGTGCCATGCTGAGCTTCTTCAAAAAAGTCAGATCGTTCGCTCCAAATCCAACCTCTTCTTTTAGCTCGCGGTTAGCGGCTTCGTAGACGCTTTCACCCGGATCAATTAATCCTTTCGAAAAACCTAATTCGTAGGATTCAGTTCCCACTGCGTATTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3525722‑3525959

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGATCAGGATCAGGTGATCGTCCACAATCGGCACAATCATCACTGCTTCCCGGTTGGTTGGACGCATTCGTTCATAAACACGCCGCACGCCATTGCTGAACTCCAGATCCACGCTCTCGACGGTAAACAGTCGGGAACGGGCTACAGTTTCAACATTCAGAATGGTGGGTTTTTGTAATGATTTGCTCATCGTGGGATCTATGCTGTGAAATCAGCGGTTATTGTG  >  NC_000913/3525960‑3526185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A