Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F17 I0 R1 109 78.2 1797446 84.3% 1515246 230.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,551,917 A→C 22.1% V186G (GTG→GGG)  malP ← maltodextrin phosphorylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,551,9170AC22.1% 63.4 / 3.1 42V186G (GTG→GGG) malPmaltodextrin phosphorylase
Reads supporting (aligned to +/- strand):  ref base A (21/11);  new base C (2/8);  total (23/19)
Fisher's exact test for biased strand distribution p-value = 2.58e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

GCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCG  >  NC_000913/3551683‑3552145
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                     
gCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGCCAACGGGGAG‑ATCCCACGCTTGACCGGTAAATGTAAACCCCGGCTCCCAGCGTCCGTCTTTCGGCCCttt                                                                                                                                                                                                                                   >  2:120346/1‑239 (MQ=255)
gCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGGG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGCCTTTCGTCACttt                                                                                                                                                                                                                                   >  1:42828/1‑239 (MQ=255)
gCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCCCttt                                                                                                                                                                                                                                   >  1:737597/1‑239 (MQ=255)
                 tGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGGAATGGTAAACTCCGGCCCCCAGCGCCCGTCTTTCGTCACTTTACCGCCAAACCCAAccc                                                                                                                                                                                                                  >  2:394958/1‑238 (MQ=255)
                        agaACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACAt                                                                                                                                                                                                            >  1:811019/1‑238 (MQ=255)
                        agaACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGAATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCTTCCGTCTTTCGTCACTTTACCCCCAATCCCTACCTGCACAt                                                                                                                                                                                                            >  1:607030/1‑238 (MQ=255)
                                  tCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCaagccttcg                                                                                                                                                                                                 >  1:270965/1‑231 (MQ=255)
                                    aGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCCCATCCAGTGCTTCGtt                                                                                                                                                                                               >  1:657840/1‑239 (MQ=255)
                                                         tgctgTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCCCGGGTAGtt                                                                                                                                                                          >  1:497727/1‑239 (MQ=255)
                                                                   cACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGCCTTTCGTCACTTTACCCCCAATCCCTACCTGCACATCCATGGCTTCGTTGTGGCGGAACCACGGGCAGCTatctcgctg                                                                                                                                                                 >  1:222505/1‑230 (MQ=255)
                                                                        aaGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCCCATCCCGTGCTTCGTTGTGGCGGAACAACGGGAGGTTCATGCGATGCCatac                                                                                                                                                           >  1:156689/1‑236 (MQ=255)
                                                                                      gtTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACCGGTAGTTACTCGGATGCCACACATACGGCCGTTCa                                                                                                                                              >  1:479395/1‑238 (MQ=255)
                                                                                               aGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGCCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCACCCTGTTTg                                                                                                                                     >  1:170689/1‑238 (MQ=255)
                                                                                                gccAGATAAAACGGATGGCGGGGGGTCGCCGGCCAAAGGCGACGCGGCTGCGCCCCGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGcc                                                                                                                                   <  1:394958/237‑1 (MQ=255)
                                                                                                               tGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCCCATCCAGTGCTTCGTTGTGGGGGAACCCCGGGTAGTTACTGCGATCCCCGTCATCCCGCGCTTCAACCCGTTTGCCATCC‑AAAAAAAAccg                                                                                                                   >  2:43007/1‑237 (MQ=255)
                                                                                                               tGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACTTCCAGGGCTTCGTTGTGGCGGAACCCAGGGTCGTTATTTCGGTTCCCTTCCTCCCGCGCTCTAACCCGTTGTCCGTCG‑ACAAAAAAcgc                                                                                                                   >  2:340779/1‑237 (MQ=255)
                                                                                                               tGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGCCATCCGGCCCTTCAAACCGTTTGACCTCGCACaaaaacgg                                                                                                                    >  2:716271/1‑235 (MQ=255)
                                                                                                                 gcgttccgcccccTGCAACAGACGCGGGGCGTGCGCCCCGCCTTTCGGAGAGCCGACAGCGGGGGG‑ATCCCACCCTTGCCCGGAAATGGAAACCTGCGGCCCCACGCCGCCGTCGTGCTTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTgg                                                                                                                  <  2:156689/227‑1 (MQ=255)
                                                                                                                         tccccTGCCACAGCCCGCGCGGCTGCGCACCGCCATTCCGAAAGCCGACAACGGGGAG‑ATCCCACGTTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCCCTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACaa                                                                                                          <  1:301263/235‑1 (MQ=255)
                                                                                                                                ccACAGACGCAGCGGCTACGCCACGCCATTACGATAGCCGACAACGGGGCG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCCGCTCCCAGCGTCCGGCTTTCGTCACTTTACCGCCAATACCTACCTGCACATCCAGCGCTTCGCTGTGGCGGAACCACAGGCGGATACCGCACGTCCCGTCATTCCGCGCTTCACACTGGTTGCCCACG‑CCAAAAGAAAGGGGGGACAAACCacaaa                                                                                                  >  2:693631/1‑235 (MQ=255)
                                                                                                                                          aGCGGGCGCACCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCCCGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGCCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCa                                                                                         <  1:576652/238‑1 (MQ=255)
                                                                                                                                                                    gCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTTCCATCG‑CCAAAAGACTGGCGGAACAAACCATATTTTTAGTTCCAACCCTAACCCCTCGCCGACTGaacca                                                              >  1:567557/1‑235 (MQ=255)
                                                                                                                                                                    gCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGCTAATTCAGACCGTAACCCGTCGCAGACTggacgc                                                              >  1:628929/1‑234 (MQ=255)
                                                                                                                                                                     ccgcaccgggggAA‑CTCCCCCGCTTACCCTGTTATGGAAACCCCCGGCCCCCAGGTCCCGGTTTTCCTCCCTTGACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGAc                                                             <  2:657840/231‑1 (MQ=255)
                                                                                                                                                                         acaaggggAGAATCCCACGCTTGCCCGGTAAGGGTAAACCCCGGCCCCCAGCTTCCGTCTTTCGTCCCTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGt                                                          <  1:753503/235‑1 (MQ=255)
                                                                                                                                                                          aaCGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGGAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATTGTTCAAAACGTAACCCCTCCCAGAGTAACCGaaaatt                                                         >  2:577118/1‑233 (MQ=255)
                                                                                                                                                                               ggAC‑ATCCCACGCTTGGCCGGTAATGGTAACCCCCGGCTCCAAGCGTCCGTTTTTGCTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCAt                                                    <  1:751553/238‑1 (MQ=255)
                                                                                                                                                                                 ag‑aTCCCACGTTTGACCGGTAATGGTAAACCCCGGCTCCCAGCGTCCGTCTTTCGTCCTTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTg                                                  <  1:120346/238‑1 (MQ=255)
                                                                                                                                                                                              tgccccgaaaTGGTAACCCCCGGCTCCCGGCGTCCTTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCa                                     <  1:253684/231‑1 (MQ=255)
                                                                                                                                                                                              tgcccGGTAAGGGTAACCTCCGGCCCCAAGCGTCCTTTTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCa                                     <  1:43007/236‑1 (MQ=255)
                                                                                                                                                                                              ggACCGTTAATGGAAAACTCGGGCCCCCGGGTGCCGTTTTTCTCCACTTCACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCa                                     <  1:175304/238‑1 (MQ=255)
                                                                                                                                                                                                    gTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACCAAAGACTGGCGGAACCAACCCTATTGATAGTTCAGACCGCAACCCGTCGCCGACTGACCGACAGTTGCCCTTGAGTCGCGGAAGGAcgccg                                >  1:37927/1‑238 (MQ=255)
                                                                                                                                                                                                        tgtaaacccccGGCCCCCAGCCTCCGTCTTTCGTCCCTTTACCGCCAATCCCTACCTGCACATCCATTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGa                           <  1:556877/230‑1 (MQ=255)
                                                                                                                                                                                                        tGGTAAACTCCGGCCCCCAGCGTCCGTCTTTCGTCACTTTCCCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGa                           <  1:101090/239‑1 (MQ=255)
                                                                                                                                                                                                         ggTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCCGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCat                                                                                                     >  2:251949/1‑164 (MQ=255)
                                                                                                                                                                                                         ggTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCat                                                                                                     <  1:251949/164‑1 (MQ=255)
                                                                                                                                                                                                          gaaaaCTCCGCCCCCCGGTGTCCTTCTTTCGTCACTTTCCCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGa                           <  1:801855/235‑1 (MQ=255)
                                                                                                                                                                                                                  cGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCGGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGCAAACCGACGCACACTGACCGACAGTTGCCATTTAGTCGAGGAAGAAAGCCCCCAGACGGCCCAGa                  >  2:178592/1‑238 (MQ=255)
                                                                                                                                                                                                                     cccccggggtccatcTTGCTACACTTGACCGCCAACCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGacca               <  1:456438/230‑1 (MQ=255)
                                                                                                                                                                                                                       cccAGCTTCCTGTTTTCGTCCCTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCg            <  1:577118/239‑1 (MQ=255)
                                                                                                                                                                                                                             ctccgtcTTTCGTCCCTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTAcc       <  1:716271/237‑1 (MQ=255)
                                                                                                                                                                                                                                 gtcTTTCGTCCCTTACCCGCCAATCCCTACCTGCTCATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAgcg  <  1:58510/239‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                     
GCAGTATGGTTGTCGTTTGGATAGAGAACTTTGGTCAGTTTTTCCGCATTGATGCCCTGCTGTTCGGCACGCAAGAAATCACCGTCGTTAAATTTAGTCAGATCAAACGGATGCGCGTGCGTCGCCTGCCACAGACGCAGCGGCTGCGCCACGCCATTACGATAGCCGACAACGGGGAG‑ATCCCACGCTTGACCGGTAATGGTAAACTCCGGCTCCCAGCGTCCGTCTTTCGTCACTTTACCGCCAATCCCTACCTGCACATCCAGTGCTTCGTTGTGGCGGAACCACGGGTAGTTACTGCGATGCCAGTCATCCGGCGCTTCAACCTGTTTGCCATCG‑ACAAAAGACTGGCGGAACAAACCATATTGATAGTTCAGACCGTAACCCGTCGCAGACTGACCGACAGTTGCCATTGAGTCGAGGAAGCACGCCGCCAGACGTCCCAGACCACCGTTACCCAGCG  >  NC_000913/3551683‑3552145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A