Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F9 I0 R1
|
74 |
77.5 |
1840812 |
85.2% |
1568371 |
224.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,791,798 |
A→C |
21.8% |
T176P (ACC→CCC) |
gabD → |
succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,791,798 | 0 | A | C | 21.8%
| 100.0
/ 2.9
| 69 | T176P (ACC→CCC) | gabD | succinate‑semialdehyde dehydrogenase I, NADP‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (28/23); new base C (7/11); total (35/34) |
| Fisher's exact test for biased strand distribution p-value = 2.82e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAA > NC_000913/2791563‑2792025
|
ccgggtgaaaCCTCTGGCCGAAGCGAAAGGCGAAAACAGCTCCGCCGCCTCCTTGTTTGGGTGGTTTACCGAAGAAGGCAAACGCTTTTAG‑GGCGACACCATCCCTGGTCATCACGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCa < 2:134727/232‑1 (MQ=255)
ggTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATggg > 1:84460/1‑238 (MQ=255)
ggTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGt > 1:682535/1‑239 (MQ=255)
ggTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCACCA‑GCCTGCACCATGGt > 1:733838/1‑239 (MQ=255)
ggTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCGGGCCGCA‑GGCGACACCATgtc > 1:478375/1‑237 (MQ=255)
ggTAAACCACGGGCCGAAGCGAAAGGCGAAATCAGCTCCGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCa < 1:365064/235‑1 (MQ=255)
ttAAACCCCGGGCCGATACTGAAGGTGAAATCAGCCTCGCAGCCTCGTTATCTGAGTGGGTGGCCGAAAAAGGCATACGCATTTAT‑GGGGACACCTTTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCG‑CCGCGGCTATCATGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATg < 2:347547/235‑1 (MQ=255)
gTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGGT‑GATTAACCGCAAAGACGGTCCGGCCCTGGCACCA‑GGCCGCCCCACggg > 2:480837/1‑237 (MQ=255)
aCCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGa > 1:229290/1‑239 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGCTTGGCGTCA‑CCGCGGCTATCCCGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAACCGGTCCGGCCCTGGCAGCC‑GGCCGCCCCAGGGGGccaaaacc > 2:325491/1‑231 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGGTGCACCATGGTGGTGAAGcc > 1:443620/1‑238 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGcc > 1:203771/1‑238 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGACGCA‑GGCTGCACCATGGTGCTGAAccc > 1:439766/1‑238 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGCCAGCA‑GGCCGCCCCATGGGGGTGaggggg > 2:365064/1‑234 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCGGGCAGCA‑GGCTGCCCCATGGGGCTGAAGcc > 2:513012/1‑238 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GAATACCCGCAAAACCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCATGGCGCTTAAccc > 1:755201/1‑238 (MQ=255)
tGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCGGATTGTTATCAAGCAGCCGATTGGCCTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGGGGCGAG‑GATTACCCGAAAAGCCGGCCCGGCCCGGGCAGC‑‑GGCTGGAACCAGGTGGTGaaaacc > 2:703321/1‑234 (MQ=255)
aaGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCCCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGt > 1:630802/1‑239 (MQ=255)
gAAAGGCGAAATCGGCTACGCCGCCTCCTTTATGGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTAATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAg < 1:185944/238‑1 (MQ=255)
ccccttcctTTATTGGGTGGTTTGCCGAAGAAGGCAAACGC‑TTTATGGGCGACACCATTCCTGGTCATCAGGCCG‑ATAACCGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTgcgctggcg < 1:703321/234‑1 (MQ=255)
tttttGGGTTGTTTGCCAAAGAAGGCAACCGCTTTTTT‑GGCGACCCCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAg < 2:14139/236‑1 (MQ=255)
gAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGCCGCCGTTCTCTGCCCCTGCGCTGGCGGAACTGGc > 1:453668/1‑239 (MQ=255)
aGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGTGGCTGAATCCCCCCAGTCAGACCCCGTTCCCTCCGCTGGCGCTGGGGGGGCTGGcc > 1:892867/1‑238 (MQ=255)
aGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGGGCTGAAGCCCGCCAGTCAGACGCCGTTCTCCGCGCTGGCCCTGGGGGAggcgggg > 2:295768/1‑233 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCTTCA‑CCCCGGCTCTCCCGCCGTGGAACTTCCCGGCGGCGAT‑GATTCCCCGCCAAGCCGAGCCGGCGCTGGCAGCC‑GCCTGCACCATGGTGCTCAAGCCCCCCACTCAGCCGCCCTTCCTTGCGCTGGCCCTCTCCGAGGTGGccg > 2:90836/1‑236 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCGGGCGCTGCCAGCAGGGCGCCACCA‑GGGCCTGAAGCCCGCCAGCCCAACCCCGCTTCCTGCGCTGGCCCCGGCGGGGCCgggca > 2:68905/1‑235 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCCTGGGGCTCAAGCCCGCCAGTCAGACCCCGTTCTCTGCGCTGGCCCGGCCGGAGCGGGCgg > 1:846854/1‑237 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCCGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGGGCTggggg > 2:594012/1‑235 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCCGTCAGACGCCGTTCTCTGCGCTGGCGATGGCGGAGCTGGCGa > 1:702911/1‑238 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGCGGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGGCAGACGCCGTTCTCTGGGCTGGGGCggggggggggggcgg > 2:430903/1‑229 (MQ=255)
tGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGGCCGGCGCTGGAACCA‑GGCTGGACCATGGAGCTGAAGGCAGCCCAGCAAAACCCATTCTCTCCCCTGGGGGAGGCGGAGCCGGGGag > 2:155974/1‑238 (MQ=255)
tgTTTGCCGAAGAAGGCAATCGCTTTTAT‑GGGCCCACTTTTCCTGGTAATCAGGCCG‑ATAAACCCCTGGTGTTTACCAAGCCGCCAATTGGC‑TCACCCGGGGCTATCACGGCGGGGACCTTCCCGGTGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGAt < 2:453668/237‑1 (MQ=255)
ttGCCGAAGAAGGAAAACGAATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCCCGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCcg < 1:513012/238‑1 (MQ=255)
tGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGCTCTCTGCGCTGGCGCTGGGGGAGCCGGCGAACcggc > 2:314586/1‑237 (MQ=255)
cGAAGAAGCAAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCgg < 1:117483/239‑1 (MQ=255)
agcaaTTTAG‑GGCGACCCCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCCCGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTg < 1:480837/235‑1 (MQ=255)
ccggtttttgggCGACACCTTCCCTGTTCATCCGGCCA‑AAAAACGCCTGTTTGTTACCAAGCGGGCGGTGGGGGCCG‑CCGGGGTTATCCCGCCGTGGAGCTCCCCGGGGGCGGT‑GATTACCCGGAACGCGGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTg < 2:210146/229‑1 (MQ=255)
ccttttAT‑GGCCACCTCTTTCCGGGCCACGAGGGCG‑AAAAACGCGTGTTTTTTAACAACCGGCCGATGGGCGTAC‑CCGCGGCTATCCCGCCGTGGAACTTCCCGGCGGCGGT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTggg < 2:682535/236‑1 (MQ=255)
cctttttttgggACCCCCTTCCTGGTTCGCTGGCCGCAAAACCGCCTGTTTTTTATCAGGCGCCCGATGTGCGTCC‑CCGTGGCTCTCACGCCGTGAAACTTCCCGGCGGCGAT‑GTTTCCCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTgg < 2:704955/228‑1 (MQ=255)
ggCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATAAAACAGCCGATTGGCGTCC‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCt < 1:845315/228‑1 (MQ=255)
acacCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGCGGCTGAAGCCCGCCAGTCAGACGCCGGTCTCTGCGCTGGCCCCGGCGGGGCTGGCGATCCGCGCGGGCGGTCCGGCCGGGGGGTTTaaaggg > 2:786069/1‑235 (MQ=255)
ttCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAACGCCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCATGGGGCTGAAGCCCGCCAGCCAGACGCCGTTCTCTCCGCTGGCGCTGGCGGGGCTGGCGTTCCGCGCGGGGCTGCCGGCGGGGGTGTTTTActggacctta > 2:845315/1‑230 (MQ=255)
catcaGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGGATTTAACGGGGTCACCGGTTcggc > 1:170129/1‑239 (MQ=255)
catcaGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAACCCGCCAGGCAGACGCCGTTCTCTGCGCTGGCCCCGGCGGGACTTGCGCCCCGCCCGGGCGTTCCGGCTGGGGGGTTTAAAGTGGGCCCCGGTGcgcg > 2:614002/1‑237 (MQ=255)
tAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCCGGCGCTGGCGGAGCTGGCGATCCGCCCGGGCGTTCCGGCCGGGGTGTTTAACGGGGTCACCGGTTCggcggggggggggg > 2:10284/1‑231 (MQ=255)
aTTGTTAGCAAGCGGCCGTTTGGGCTCA‑CCGCGGCTATCCCGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACt < 1:153485/239‑1 (MQ=255)
tgtttATCAAGCAGCCGATTGGCGTCC‑CCGCGGCTATCACGCCGTGGAACTTCCCGGGGGCGAT‑GATTCCCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACt < 1:594012/235‑1 (MQ=255)
taccAAGCAGCCGATTGGCGTCC‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGAcc < 1:158479/235‑1 (MQ=255)
agcAAGCCGCCGATGGGCGTCC‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTCCCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAg < 1:786069/237‑1 (MQ=255)
gATTGGCGTCA‑CCGGGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCAc < 1:798264/192‑1 (MQ=255)
aCGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGGGCGGTCGGGAACGAACCAACCCGGAACCCCCCGGTGGGCGAACCGGCG‑GTTACCgg > 1:553557/1‑239 (MQ=255)
gccgggggACCTCCCCGGCGGAGAT‑GATGACCCGCAAACGCGGCCCGGCGCTGGCAGCA‑GGCTGCCCCTTGGTGCTGACGCCCGCCAGTCAGACGCCGTTCTCTGCGCGGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGt < 2:619638/233‑1 (MQ=255)
gccggTGGCACTTCCCGGCGG‑GATGGTTTGCCCGCAAAGCGGTGCCGGCGTGGGCGGCG‑GGTTCCACGATGGTGCTGAGGCCCGGCAGTCAGGCGGCGGTCGCTGCGGTGGCGCTGGTGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGt < 2:173593/235‑1 (MQ=255)
ccGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAAACGTCG‑GTTACCGGtt > 1:515884/1‑238 (MQ=255)
cccGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGGAACGAACTGCCCAGTAAACCGCTGGGGCGGCAAATGTCGCTTTACC‑GTTGGACCGGAAATg > 1:377864/1‑239 (MQ=255)
cggcgggctt‑gatTCCCCGAAGCGCCGGCCCGGCGCGGGCCGCG‑GGCGGCCCCTTGGTGCTGAAGCCCGCCAGTCAGCCGCCGTTCGCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGgc < 2:583138/230‑1 (MQ=255)
cggcgAT‑GCTTACCCGCAAAGCCGGTCCGGGCGTGGCAGCG‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGgccg < 1:430903/238‑1 (MQ=255)
tgat‑gatTACCCGAAAGGCCGGTCCGGGGCTGGACGCC‑GGCTGCACCTTGGTGCGGAACCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCa < 1:325491/237‑1 (MQ=255)
cgAT‑GATTCCCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCa < 1:122602/238‑1 (MQ=255)
cgatgttaccccGAAAGGCCGGTCCGGCACGGGCAGCG‑GGCTCCACACTGGTGCGGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCa < 1:68905/229‑1 (MQ=255)
gatTACCCGAAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTaa < 1:110030/239‑1 (MQ=255)
cccGAAAGGGCGGGCCGGCGCTGGCAGGC‑GGCTGCCACAGGGGTCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGaa < 1:10284/239‑1 (MQ=255)
cAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGGATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAGCGCACTGCCACGTAACCCGCTGGTGCGGCAACCGGCG‑GTTACCGGTGTGACCCAAACTGACCGCCAGTTAAAGGaagcag > 2:572776/1‑235 (MQ=255)
cGGTCCGGCGCGGGCCGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGa < 1:295768/239‑1 (MQ=255)
tCCGGCGCGGGCGGCC‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGaaa < 1:614002/238‑1 (MQ=255)
gccGGCGCTGGCAGCA‑GGCTGCCCCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGaaa < 1:645215/237‑1 (MQ=255)
gggCAGCA‑GGCTGCACCAGGGTGCGGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAg < 1:572776/238‑1 (MQ=255)
gctgta‑gGCTGCCCCATGGTGGTGAGTCCCGCCAGTCAGACCCCGTTCCCGGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCA‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGa < 1:77340/233‑1 (MQ=255)
cgagggCTGCCCCATGGGGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGaaa < 1:756153/234‑1 (MQ=255)
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ACAGGGTAAACCACTGGCCGAAGCGAAAGGCGAAATCAGCTACGCCGCCTCCTTTATTGAGTGGTTTGCCGAAGAAGGCAAACGCATTTAT‑GGCGACACCATTCCTGGTCATCAGGCCG‑ATAAACGCCTGATTGTTATCAAGCAGCCGATTGGCGTCA‑CCGCGGCTATCACGCCGTGGAACTTCCCGGCGGCGAT‑GATTACCCGCAAAGCCGGTCCGGCGCTGGCAGCA‑GGCTGCACCATGGTGCTGAAGCCCGCCAGTCAGACGCCGTTCTCTGCGCTGGCGCTGGCGGAGCTGGCGATCCGCGCGGGCGTTCCGGCTGGGGTATTTAACGTGGTCACCGGTTCGGCGGGCGCGGTCGGTAACGAACTGACCAGTAACCCGCTGGTGCGCAAACTGTCG‑TTTACCGGTTCGACCGAAATTGGCCGCCAGTTAATGGAACAGTGCGCGAAAGACATCAAGAAA > NC_000913/2791563‑2792025
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
