Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
177 |
96.4 |
2178490 |
87.4% |
1904000 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
2,093,736 |
T→G |
23.3% |
V90G (GTG→GGG) |
hisB → |
histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,093,736 | 0 | T | G | 23.3%
| 113.8
/ 5.0
| 64 | V90G (GTG→GGG) | hisB | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| Reads supporting (aligned to +/- strand): ref base T (36/10); new base G (10/6); total (48/16) |
| Fisher's exact test for biased strand distribution p-value = 3.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCCTGATTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCT > NC_000913/2093505‑2093974
|
cccTGATTAGCGACCGGGCGAGTGATGTGCAGGTGGACCGTTTTGATAAACGCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGAt < 1:386632/238‑1 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACCGTTTGATTAAGGGCTGATTTGTc > 1:899924/1‑238 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTGATGATGCAGATCTTCACCTCCCAA‑GGCGTACAGTTTGATTAAGGGCTGATTTTTc > 1:890641/1‑238 (MQ=255)
aTTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGCGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGACCTTCACCTCGCAA‑GGCGTACAGTTTGCAGAACTGCTGATTTGTcc > 1:704564/1‑239 (MQ=255)
cGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTTGCCGccc > 2:258114/1‑236 (MQ=255)
cGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGCTTCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTGTCCGCAc > 1:1038548/1‑238 (MQ=255)
aaCCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGACTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCGGATTTGTCCGCGccc > 1:126556/1‑237 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCCCA‑GGCGGATTTCGATGGCCCGCCCACCCTGATGTTGCAGATCTTCACCTCGCAA‑GGCTTACAGTTTGATGAAGGGCTGGTTTGTCCGCACCTGcc > 1:151797/1‑238 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGATGATTTTTCCGCACCTGcc > 1:927401/1‑238 (MQ=255)
cgccgAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCCCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGAGCTGATTTGTCCGCACCTGcc > 1:754464/1‑238 (MQ=255)
ttttCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGt > 1:796380/1‑239 (MQ=255)
ggggtggccttttttGAAAACCCCG‑CTTTGAACCCGGGGGTGACCCCGGAATGGCAGAAGCGACAAAAAGGGGGC‑TAAAAGCTGGGGATGATCACTAATGAGGTGGGTCTGGGAAAAAAAAGTTTCCCACA‑GGCGGATTTCGAGGGCCCGCACAACCTGATGATGAAGATCTCCACCCCGCAA‑GGCGTACAGTTTGATGAAGTGCTGTTTTGTCCGCACCGGCCCGCCGATGAGTGCGa < 2:880110/228‑1 (MQ=255)
gACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCTGATTTGTCCGCACCTGCCCCCCGATGAGGGCGACTGCCg > 2:810774/1‑239 (MQ=255)
ttttGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAg > 1:328238/1‑238 (MQ=255)
aaCTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCCCAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACCGTTTGCTGAAGGGCGGATTTGTCCCCCCCCGCCCCCCGAGTAGGGGGACTGCCGAAACCCGaaaaaa > 2:950137/1‑236 (MQ=255)
cTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCCCAA‑GGCGTAACGGTTGATGAAGTGCTGATTTGTCCGCCCCTGCCCGCCGCTGAGGGCGACTGCAGGAAACCGaaaagaaa > 2:602954/1‑234 (MQ=255)
cTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACtgg > 1:603309/1‑239 (MQ=255)
cccGGGCGTAACCCCGGAACTGCGAAAGCTGAAAAAGGCGGGT‑AAAAAGCTGGTAATGATCATTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACG‑GGCGGATTCCGATGGCCCGCACACCCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGaa < 1:357124/237‑1 (MQ=255)
acgggggGTGACCCGGGACGTGCTGAAGC‑GGAAAAAGGGGGCAGAAGAGCGGGTGATGACCAATAAGCGGGATGGTCTTGAAACAAAAATTTCCCCAAA‑GGCGAATTCGGATGGCCGGCACACCGTGATGATGCAGATCTTC‑CCCGGCAAGGGGGTACAGTTTGATGAAGGGCTGTTTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGaa < 2:867741/235‑1 (MQ=255)
ggCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGCTTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTa > 1:377543/1‑239 (MQ=255)
ggCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTa > 1:927538/1‑239 (MQ=255)
ggCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGACTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGCTGAAGGGCTGATTTGTCCGCACCTGACCGCCGCTGAGTGCGACGGCCGTAAGCCGAAAGGAAAACTGGTGGAAcagta > 1:519446/1‑235 (MQ=255)
gATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTg > 1:292547/1‑238 (MQ=255)
ctgAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGCTGATGCAGATCTTCCCCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGCTCAGTGCGACTGCCGTAAGCCGAAAGCAAAACTGGGGGAACGTTATCTGGCGGAGCAAACgca > 2:382430/1‑237 (MQ=255)
gCTGCAAAAAGCGGGT‑TAAAAGCGGGGTATGATCACTAATCAGGATGGTCTGGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCGCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGAt < 1:950137/238‑1 (MQ=255)
cAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGCGGAACGTTATCTGGCCGAGCAAGCGATGGGTcgc > 1:583886/1‑237 (MQ=255)
aaaGCGGGC‑TAAAAGCGGGTGGTGAACAATAACCAGGATGGTCTTGAAACAAAAAGTTCCCCAAG‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTaa < 1:382430/239‑1 (MQ=255)
agacagttaaaaGTTGTTGATGATCACTAACCGGGGT‑GTCTTGGAAAAAAAAGTTTTCCACAGGGCGGATTGCGTGGGCCCGCAAACCGGGATGTGGAAGTTCTTCCCCCCGAAG‑GGCGTACGTTTGGATGAAGTGCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTaa < 2:196591/227‑1 (MQ=255)
ggTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGGTGGAACGTTATCTGGCTGAGCCAGGCAGGGAACCGGCCAAAAGTTAtggtgatgggg > 2:522222/1‑230 (MQ=255)
gTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGGGCGGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGTGGGAACCGTTCCTGGCTGGGAAGGGGGGGGAAGGGCCTAACACTTTAGTGATTGGCg > 2:914027/1‑238 (MQ=255)
tgatgaTCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAtgtg > 1:196591/1‑230 (MQ=255)
gatCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCAAGCGATGGAACCGGCTAACAGTTAttgg > 2:740663/1‑223 (MQ=255)
atCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATcgcgc > 1:17217/1‑239 (MQ=255)
cTAATCAGGATGGTCTTGGCACACAACGTTTCACACA‑GGCGGATTTAGATGGCCCGCGCCACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGGCAGCCGAAAGAAAAACTGGCGGGCGGTTATCTGCCTGCGCAAACGATGGCGCGCGCTCACGATTATGAGATTGGGGATcgcgcaccc > 2:120718/1‑235 (MQ=255)
aTCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAGTGGATTGGCGATGCGGcgaccgac > 1:1033833/1‑239 (MQ=255)
tCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGGAAAACTGGGGGAACGTTATCTGGCTGAGCAAGGGAAGGATCGCGCTACAAGTATTGTGTTTGGGGATCGCGCGACCGAAATTCAACTgg > 2:792285/1‑239 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGGGATTGGCGATCGCGCGACCGACATTCAACTGGCg > 1:518261/1‑239 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGCGGAACGTTATCTGGCTGGGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGCCATTCAACTGGCg > 1:608361/1‑239 (MQ=255)
ttGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGAACAGTTTGATGAAGTGCTGATTTGTCCGCACCCGCCCGCCGCTGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCAAGCGATGGAACGCGCTAAACGTTATGGGATTGGAGATCCCGCGACCGACATTAAACAgggg > 2:182927/1‑237 (MQ=255)
gAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTg > 1:61212/1‑92 (MQ=255)
gAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTg < 2:61212/92‑1 (MQ=255)
acaAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGaaaa > 1:867300/1‑237 (MQ=255)
cagaGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGGGGTTGGGGGACGCGCCACCGCAATTAAACGGGGGGaaaaaag > 2:913915/4‑236 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAC‑GGCGTACAGTTTGATGAAAAGCTGATTTGTCCGCCCCTGCCCGCCGATTAGTGCGCATGCCGGAAGACGAAAGTAAAACTGGTGGAACGTTAGCTGGCGGAGCAAGCGATGGAACGCGCTAACGGTTAAGTGCTTAGCGATCGCGCGGCCCACAACCAAATCGCGGGAAACAt > 2:130162/1‑239 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACa > 1:1038866/1‑190 (MQ=255)
caAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGGGGAACGTTATCTGGCTGAGCACGCGATGGAACCGCCAAACAATTATGGGATTGGGGTTGGCGGGGCCGCAATTCAAATGGCGGGAAAAAt > 2:740481/1‑239 (MQ=255)
cccAGA‑GGCGGTTTCGGATGGCCCCAAAAACCTGTTGATGAAAATCTTCACCCCGAAA‑GGCGTACATTTGGATGAAGTGCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTa < 1:258114/239‑1 (MQ=255)
cccACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGAAGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGCAAAACATGGGCAtt > 1:864551/1‑238 (MQ=255)
ca‑GGCGGTTTTCGATGGCCCGCACAGCCTGATTGTGCAGATCCTCCCCTCGCAA‑GGCGTACAGTTTGATGAATTTCTGATTTTCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTgg < 1:330176/239‑1 (MQ=255)
gggggttttGGAGGGCCCGCCAAACCTGATGAGGCAGCTCTTCACCTCGAAA‑GGCGTACATTTTGATGAAGGGCTGTTTTGTCCGCACCGGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGtt < 1:336096/233‑1 (MQ=255)
cccGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGGGCGACCGACATTCAACCTGCGGAAAACAAGGGCATTCCGGGTTTACGccagaccccca > 2:400433/1‑229 (MQ=255)
ctccacaCCCTGATGATGCAGATCTTCCCCTGGCAG‑GGGGTCGTGTTGGATGAAGGTCTGTTTTGTCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACcgcg < 1:400433/235‑1 (MQ=255)
cggaacaACCGGAGGAGGCAGATCTTCACCCGGAAA‑GGCGTACAGTTTGATGAAGGGCTAATTGGCCCGCACCTGACCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACcgcg < 1:947396/234‑1 (MQ=255)
ccTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTAtg > 1:61078/1‑158 (MQ=255)
gtgatgaGGAATATCTTCCACTCGCAG‑GGGGTTAAGTTGGAGTAGGGGGTGATTTGCCCGAACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGaa < 1:522222/238‑1 (MQ=255)
cAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGACCTGGCCAAt > 1:109041/1‑239 (MQ=255)
cAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAAt > 1:1008830/1‑239 (MQ=255)
cTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACGGGTTTACGCCACGACCCCGAAACCCTGAACGGGCCAATAATTg > 2:854947/1‑239 (MQ=255)
cGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGACCa > 1:531058/1‑238 (MQ=255)
cGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGCCGATCGGGCGACGGACATTCAACTGGCGGAAAACATGGGCCTTACTGGTTTACGCTACGACCGCGAAACCCTGACCTGGCCAATGATggggcgtaac > 2:621668/1‑232 (MQ=255)
cgcggggtctACTGTTTGATGGTGGGTTGTTTGGCCCGCCCCTGCCCGCCGATGAGGGCGACTGCCGTAACCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCaa < 2:183308/230‑1 (MQ=255)
ccaagggCGTACGTTTGGATGAAGTTCTGATTTGCCCGCCCCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCaa < 1:257019/234‑1 (MQ=255)
cAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATAATTGGCGGACAAcc > 2:257019/1‑238 (MQ=255)
tgatgaAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCCCGAAACCCTGAACTGCCCAATGATTGGGGAGAAAACCACCAGACGTGccc > 2:799919/1‑239 (MQ=255)
tGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGGGGGCAACTCACCAGACGGGACCGTTaaccc > 2:865198/1‑235 (MQ=255)
tGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCCACGACCGCGAAACCCTGAACTGGCCAATGATTGGGGCGCAACTACCCAGACGGAACCGTTACGc > 2:737814/1‑238 (MQ=255)
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CCCTGATTAGCGAACCGCCGAGTGATTTTCAGGTGGACCGTTTTGATAAACTCGCCTTTGAA‑CCGGGCGTGATCCCGGAACTGCTGAAGCTGCAAAAAGCGGGC‑TACAAGCTGGTGATGATCACTAATCAGGATGGTCTTGGAACACAAAGTTTCCCACA‑GGCGGATTTCGATGGCCCGCACAACCTGATGATGCAGATCTTCACCTCGCAA‑GGCGTACAGTTTGATGAAGTGCTGATTTGTCCGCACCTGCCCGCCGATGAGTGCGACTGCCGTAAGCCGAAAGTAAAACTGGTGGAACGTTATCTGGCTGAGCAAGCGATGGATCGCGCTAACAGTTATGTGATTGGCGATCGCGCGACCGACATTCAACTGGCGGAAAACATGGGCATTACTGGTTTACGCTACGACCGCGAAACCCTGAACTGGCCAATGATTGGCGAGCAACTCACCAGACGTGACCGTTACGCT > NC_000913/2093505‑2093974
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
