mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 62,169 | T→C | 12.2% | S366G (AGC→GGC) | rapA ← | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| RA | 71,877 | A→G | 31.6% | E176G (GAG→GGG) | yabI → | DedA family inner membrane protein |
| RA | 107,805 | T→C | 10.3% | L34P (CTC→CCC) | secM → | regulator of secA translation |
| RA | 203,550 | T→G | 12.7% | V68G (GTG→GGG) | lpxB → | tetraacyldisaccharide‑1‑P synthase |
| RA | 207,473 | T→G | 31.5% | M783R (ATG→AGG) | dnaE → | DNA polymerase III alpha subunit |
| RA | 216,077 | G→C | 5.2% | intergenic (+98/+102) | nlpE → / ← yaeF | lipoprotein involved with copper homeostasis and adhesion/putative lipoprotein |
| RA | 223,706 | T→A | 7.6% | intergenic (+298/‑65) | gmhB → / → rrsH | D,D‑heptose 1,7‑bisphosphate phosphatase/16S ribosomal RNA of rrnH operon |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 277,417 | A→C | 13.3% | T235P (ACC→CCC) | mmuM → | CP4‑6 prophage; S‑methylmethionine:homocysteine methyltransferase |
| RA | 324,226 | A→G | 11.8% | S157G (AGC→GGC) | ykgG → | LutC family protein; putative electron transport chain YkgEFG component |
| RA | 342,454 | A→G | 13.7% | R444G (AGA→GGA) | yahJ → | putative metallo‑dependent hydrolase domain deaminase |
| RA | 357,381 | T→G | 10.9% | V404G (GTG→GGG) | codA → | cytosine/isoguanine deaminase |
| RA | 361,670 | A→T | 16.0% | V64E (GTA→GAA) | lacA ← | thiogalactoside acetyltransferase |
| RA | 429,749 | A→G | 10.6% | E82G (GAG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 429,854 | T→G | 14.1% | V117G (GTG→GGG) | secF → | SecYEG protein translocase auxillary subunit |
| RA | 435,554 | T→G | 14.3% | *140G (TGA→GGA) | nusB → | transcription antitermination protein |
| JC JC | 458,790 | IS186 (–) +6 bp :: Δ1 bp | 43.9% | intergenic (+90/‑93) | clpX → / → lon | ATPase and specificity subunit of ClpX‑ClpP ATP‑dependent serine protease/DNA‑binding ATP‑dependent protease La |
| RA | 489,597 | T→G | 13.7% | V1021G (GTG→GGG) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 501,710 | T→C | 13.9% | E510G (GAG→GGG) | ybaL ← | inner membrane putative NAD(P)‑binding transporter |
| RA | 514,789 | T→C | 22.3% | E24G (GAG→GGG) | ybbJ ← | inner membrane protein; stimulator of the QmcA suppressor of ftsH‑htpX |
| RA | 520,534 | A→G | 23.7% | E40G (GAG→GGG) | ybbP → | putative ABC transporter permease |
| RA | 541,102 | A→T | 15.4% | M180L (ATG→TTG) | ybbY → | putative uracil/xanthine transporter |
| RA | 559,176 | T→A | 16.8% | V68E (GTA→GAA) | sfmC → | putative periplasmic pilus chaperone |
| RA | 617,242 | T→G | 16.3% | V1029G (GTG→GGG) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 630,187 | A→G | 19.3% | G98G (GGA→GGG) | cstA → | carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
| RA | 635,136 | C→T | 11.3% | E81K (GAA→AAA) | ybdM ← | Spo0J family protein, ParB‑like nuclease domain |
| RA | 644,428 | A→T | 13.1% | G192G (GGT→GGA) | rna ← | ribonuclease I |
| RA | 645,919 | T→C | 8.1% | E221G (GAG→GGG) | citT ← | citrate/succinate antiporter; citrate carrier |
| RA | 647,210 | A→C | 23.6% | G100G (GGT→GGG) | citG ← | 2‑(5''‑triphosphoribosyl)‑3'‑dephosphocoenzyme‑A synthase |
| RA | 665,104 | A→C | 16.9% | S29R (AGT→AGG) | rlpA ← | septal ring protein, suppressor of prc, minor lipoprotein |
| RA | 701,419 | C→G | 11.0% | R59P (CGC→CCC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 759,427 | A→G | 12.5% | E241G (GAG→GGG) | sucA → | 2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| RA | 762,113 | T→C | 22.2% | S198P (TCC→CCC) | sucB → | dihydrolipoyltranssuccinase |
| RA | 811,721 | T→G | 46.8% | V67G (GTG→GGG) | bioC → | malonyl‑ACP O‑methyltransferase, SAM‑dependent |
| RA | 830,872 | A→T | 12.6% | M1M (ATG→TTG) † | rhlE → | ATP‑dependent RNA helicase |
| RA | 853,476 | A→G | 13.3% | G98G (GGA→GGG) | mntR → | Mn(2+)‑responsive manganese regulon transcriptional regulator |
| RA | 909,181 | A→G | 16.2% | A38A (GCT→GCC) | ltaE ← | L‑allo‑threonine aldolase, PLP‑dependent |
| RA | 976,672 | T→G | 17.3% | V116G (GTG→GGG) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 1,058,486 | T→C | 12.2% | S135P (TCG→CCG) | torC → | trimethylamine N‑oxide (TMAO) reductase I, cytochrome c‑type subunit |
| RA | 1,069,065 | G→A | 20.2% | L259L (CTG→TTG) | rutG ← | pyrimidine permease |
| RA | 1,158,048 | A→C | 25.9% | P60P (CCA→CCC) | ptsG → | fused glucose‑specific PTS enzymes: IIB component/IIC component |
| RA | 1,159,550 | T→G | 13.9% | T668P (ACC→CCC) | fhuE ← | ferric‑rhodotorulic acid outer membrane transporter |
| RA | 1,170,692 | C→T | 14.2% | E1091E (GAG→GAA) | mfd ← | transcription‑repair coupling factor |
| RA | 1,196,131 | G→A | 28.2% | A337T (GCC→ACC) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,196,305 | C→T | 40.1% | R395C (CGT→TGT) | icd → | isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase |
| RA | 1,290,375 | A→G | 13.4% | E45G (GAG→GGG) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,295,137 | T→C | 11.5% | pseudogene (5/150 nt) | insZ ← | pseudogene, transposase homolog |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,518,460 | A→G | 5.1% | H129H (CAT→CAC) | mnaT ← | methionine N‑acyltransferase; L‑amino acid N‑acyltransferase |
| RA | 1,701,625 | A→G | 14.9% | G223G (GGA→GGG) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,722,415 | A→G | 12.0% | S99G (AGC→GGC) | ydhK → | putative efflux protein (PET) component of YdhJK efflux pump |
| RA | 1,761,252 | A→C | 16.1% | G180G (GGT→GGG) | sufD ← | component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,837,435 | T→G | 22.2% | V75G (GTG→GGG) | ynjC → | putative ABC transporter permease |
| RA | 1,839,222 | A→G | 11.0% | E159G (GAG→GGG) | ynjD → | putative ABC transporter ATPase |
| RA | 1,872,402 | T→G | 12.3% | V121G (GTG→GGG) | yeaJ → | putative diguanylate cyclase |
| RA | 1,901,015 | T→C | 19.1% | S191G (AGC→GGC) | yoaE ← | putative membrane protein/conserved protein |
| RA | 1,976,691 | T→C | 13.3% | E150G (GAG→GGG) | motA ← | proton conductor component of flagella motor |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 2,029,277 | C→T | 14.0% | A30A (GCG→GCA) | yedI ← | DUF808 family inner membrane protein |
| RA | 2,093,736 | T→G | 23.3% | V90G (GTG→GGG) | hisB → | histidinol‑phosphatase and imidazoleglycerol‑phosphate dehydratase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,181,417 | T→G | 16.5% | C108G (TGT→GGT) | yegV → | putative kinase |
| RA | 2,206,917 | T→G | 14.6% | V408G (GTG→GGG) | yehM → | uncharacterized protein |
| RA | 2,274,349 | T→G | 26.1% | G57G (GGT→GGG) | yejB → | microcin C ABC transporter permease |
| RA | 2,305,466 | T→C | 15.6% | E430G (GAG→GGG) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,489,487 | T→G | 19.1% | T234P (ACC→CCC) | yfdV ← | putative transporter |
| RA | 2,506,130 | T→C | 11.9% | E168G (GAG→GGG) | ypdF ← | Xaa‑Pro aminopeptidase |
| RA | 2,508,136 | A→C | 21.8% | V36G (GTG→GGG) | fryB ← | putative enzyme IIB component of PTS |
| RA | 2,511,428 | G→C | 18.3% | intergenic (+101/+40) | ypeC → / ← mntH | DUF2502 family putative periplasmic protein/manganese/divalent cation transporter |
| JC JC | 2,536,312 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | 10.1% | coding (479‑484/510 nt) | crr → | glucose‑specific enzyme IIA component of PTS |
| RA | 2,745,089 | A→C | 16.0% | V84G (GTG→GGG) | trmD ← | tRNA m(1)G37 methyltransferase, SAM‑dependent |
| RA | 2,747,959 | A→C | 13.5% | intergenic (‑164/‑3) | ffh ← / → ypjD | Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)/cytochrome c assembly protein family inner membrane protein |
| RA | 2,753,258 | T→G | 9.8% | C488W (TGT→TGG) | recN → | recombination and repair protein |
| RA | 2,820,043 | T→C | 12.2% | S657G (AGC→GGC) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,828,506 | T→G | 25.0% | V257G (GTG→GGG) | srlD → | sorbitol‑6‑phosphate dehydrogenase |
| RA | 2,849,848 | A→C | 14.4% | M1G (GTG→GGG) † | hycB ← | hydrogenase 3, Fe‑S subunit |
| RA | 2,876,559 | G→T | 20.5% | intergenic (‑230/‑22) | cysD ← / → iap | sulfate adenylyltransferase, subunit 2/aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,877,027 | T→G | 19.3% | G149G (GGT→GGG) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,909,229 | A→C | 18.5% | G146G (GGT→GGG) | pyrG ← | CTP synthetase |
| RA | 2,999,610 | A→T | 15.4% | R94R (CGT→CGA) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
| RA | 3,012,219 | T→G | 12.0% | S253R (AGT→AGG) | yqeA → | putative amino acid kinase |
| RA | 3,027,731 | A→G | 16.4% | E204G (GAG→GGG) | ghxQ → | guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter |
| RA | 3,064,797 | T→A | 13.5% | intergenic (+19/‑5) | scpB → / → scpC | methylmalonyl‑CoA decarboxylase, biotin‑independent/propionyl‑CoA:succinate CoA transferase |
| RA | 3,064,818 | C→A | 16.4% | T6K (ACA→AAA) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,064,919 | G→C | 14.7% | A40P (GCG→CCG) | scpC → | propionyl‑CoA:succinate CoA transferase |
| RA | 3,090,130 | A→C | 25.4% | T126P (ACC→CCC) | yggI → | Zn‑dependent metalloprotease‑related protein |
| RA | 3,107,795 | A→C | 21.4% | V454G (GTG→GGG) | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,154,042 | T→G | 15.5% | S160R (AGT→AGG) | yghB → | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| RA | 3,196,626 | A→C | 13.9% | V43G (GTG→GGG) | hldE ← | heptose 7‑phosphate kinase and heptose 1‑phosphate adenyltransferase |
| RA | 3,219,741 | A→G | 15.5% | E83G (GAG→GGG) | patA → | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| RA | 3,257,801 | G→A | 10.2% | L70L (CTC→CTT) | yhaO ← | putative transporter |
| RA | 3,258,529 | T→C | 10.0% | E374G (GAG→GGG) | tdcG ← | L‑serine dehydratase 3, anaerobic |
| RA | 3,277,500 | T→G | 17.7% | V55G (GTG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,277,509 | A→G | 16.0% | E58G (GAG→GGG) | yhaV → | toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system |
| RA | 3,289,078 | C→A | 19.2% | Q89K (CAG→AAG) | yraJ → | putative outer membrane protein |
| RA | 3,293,731 | C→G | 12.2% | A111G (GCG→GGG) | lpoA → | OM lipoprotein stimulator of MrcA transpeptidase |
| RA | 3,388,176 | A→G | 14.1% | S5P (TCC→CCC) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,398,908 | A→G | 17.7% | A357A (GCT→GCC) | mreC ← | cell wall structural complex MreBCD transmembrane component MreC |
| RA | 3,416,417 | C→T | 14.3% | S462F (TCT→TTT) | acrF → | multidrug efflux system protein |
| RA | 3,417,249 | T→G | 13.6% | G739G (GGT→GGG) | acrF → | multidrug efflux system protein |
| RA | 3,460,838 | T→C | 11.6% | L341P (CTC→CCC) | gspF → | general secretory pathway component, cryptic |
| RA | 3,479,972 | G→C | 18.7% | G212G (GGC→GGG) | kefB ← | potassium:proton antiporter |
| RA | 3,511,160 | A→C | 13.0% | V88G (GTG→GGG) | yhfY ← | PRD domain protein |
| RA | 3,515,931 | A→C | 12.7% | intergenic (‑18/+89) | dam ← / ← damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring |
| RA | 3,532,595 | C→A | 17.3% | intergenic (‑156/‑223) | yhgE ← / → pck | DUF4153 family putative inner membrane protein/phosphoenolpyruvate carboxykinase [ATP] |
| RA | 3,534,951 | A→C | 17.0% | G306G (GGT→GGG) | envZ ← | sensory histidine kinase in two‑component regulatory system with OmpR |
| RA | 3,544,446 | A→C | 15.8% | S133R (AGT→AGG) | bioH ← | pimeloyl‑ACP methyl ester carboxylesterase |
| RA | 3,560,455:1 | +G | 100% | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,560,494 | G→A | 6.9% | pseudogene (112/150 nt) | glpR ← | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,661,665 | C→G | 13.4% | R418G (CGT→GGT) | mdtF → | anaerobic multidrug efflux transporter, ArcA‑regulated |
| RA | 3,673,796 | A→C | 18.9% | A145A (GCA→GCC) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
| RA | 3,674,185 | T→G | 12.9% | V275G (GTG→GGG) | yhjD → | inner membrane putative BrbK family alternate lipid exporter |
| RA | 3,680,185 | T→G | 25.3% | V256G (GTG→GGG) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,689,747 | T→C | 18.4% | E172G (GAG→GGG) | bcsZ ← | endo‑1,4‑D‑glucanase |
| RA | 3,712,474 | A→G | 6.7% | L154P (CTC→CCC) | yhjY ← | autotransporter beta‑domain protein |
| RA | 3,798,622 | C→A | 10.6% | V231F (GTT→TTT) | waaU ← | lipopolysaccharide core biosynthesis |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| RA | 3,826,738 | A→G | 12.4% | E510G (GAG→GGG) | recG → | ATP‑dependent DNA helicase |
| RA | 3,838,902 | C→T | 12.1% | L219L (CTG→TTG) | yicL → | EamA family inner membrane putative transporter |
| RA | 3,852,876 | T→G | 13.2% | intergenic (‑92/+14) | ilvB ← / ← ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| RA | 3,862,670 | T→A | 33.5% | pseudogene (934/1617 nt) | glvC ← | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component |
| RA | 3,901,832 | T→A | 12.5% | Y130F (TAT→TTT) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| RA | 3,978,862 | A→C | 14.9% | T88P (ACC→CCC) | wzyE → | putative ECA polysaccharide chain elongation protein |
| RA | 3,979,402 | A→C | 7.5% | T268P (ACC→CCC) | wzyE → | putative ECA polysaccharide chain elongation protein |
| RA | 3,992,312 | T→C | 10.7% | L387P (CTC→CCC) | cyaA → | adenylate cyclase |
| JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,010,603 | A→G | 7.2% | E135G (GAG→GGG) | yigL → | pyridoxal phosphate phosphatase |
| RA | 4,015,351 | T→C | 10.8% | intergenic (+37/+3) | metE → / ← ysgA | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase/putative carboxymethylenebutenolidase |
| RA | 4,065,580 | T→A | 18.8% | T63S (ACC→TCC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,065,604 | T→A | 19.7% | I55F (ATC→TTC) | yihO ← | putative sulphoquinovose importer |
| RA | 4,066,184 | G→A | 8.8% | F337F (TTC→TTT) | yihP ← | putative 2,3‑dihydroxypropane‑1‑sulphonate exporter, membrane protein |
| RA | 4,069,800 | G→T | 12.4% | T201K (ACA→AAA) | yihR ← | putative sulphoquinovose mutarotase |
| RA | 4,103,607 | T→C | 12.4% | S457G (AGT→GGT) | cpxA ← | sensory histidine kinase in two‑component regulatory system with CpxR |
| RA | 4,138,037 | A→C | 13.8% | G333G (GGT→GGG) | gldA ← | glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| RA | 4,146,772 | T→G | 10.5% | V172G (GTG→GGG) | pflC → | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme |
| RA | 4,156,161 | A→G | 15.5% | E50G (GAG→GGG) | argB → | acetylglutamate kinase |
| RA | 4,156,550 | T→C | 13.7% | S180P (TCC→CCC) | argB → | acetylglutamate kinase |
| RA | 4,158,653 | T→G | 12.0% | V55G (GTG→GGG) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| RA | 4,177,123 | A→G | 8.7% | S394G (AGC→GGC) | tufB → | translation elongation factor EF‑Tu 2 |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,219,539 | C→T | 14.6% | A315V (GCG→GTG) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,253,517 | A→G | 10.3% | S168G (AGT→GGT) | ubiA → | p‑hydroxybenzoate octaprenyltransferase |
| RA | 4,258,627 | A→C | 17.1% | T296P (ACC→CCC) | dinF → | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| RA | 4,269,660 | C→G | 18.4% | R83G (CGC→GGC) | aphA → | acid phosphatase/phosphotransferase, class B, non‑specific |
| RA | 4,285,484 | A→G | 13.1% | S630P (TCG→CCG) | acs ← | acetyl‑CoA synthetase |
| RA | 4,296,060 | C→T | 12.9% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,391,349 | A→C | 12.2% | V54G (GTG→GGG) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,414,920 | T→G | 11.5% | F216V (TTT→GTT) | aidB → | DNA alkylation damage repair protein; flavin‑containing DNA binding protein, weak isovaleryl CoA dehydrogenase |
| RA | 4,430,345 | A→G | 17.1% | E161G (GAG→GGG) | cycA → | D‑alanine/D‑serine/glycine transporter |
| RA | 4,434,509 | A→G | 17.6% | intergenic (+16/+113) | ytfH → / ← cpdB | DUF24 family HxlR‑type putative transcriptional regulator/2':3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,437,248 | A→G | 12.5% | E165G (GAG→GGG) | cysQ → | 3'(2'),5'‑bisphosphate nucleotidase |
| RA | 4,444,689 | T→G | 14.3% | V193G (GTG→GGG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,460,179 | A→G | 11.7% | T62T (ACT→ACC) | nrdG ← | anaerobic ribonucleotide reductase activating protein |
| RA | 4,462,859 | Δ1 bp | 5.1% | intergenic (‑199/+195) | nrdD ← / ← treC | anaerobic ribonucleoside‑triphosphate reductase/trehalose‑6‑P hydrolase |
| RA | 4,480,111 | C→T | 11.2% | L128F (CTC→TTC) | yjgN → | DUF898 family inner membrane protein |
| RA | 4,489,849 | A→C | 11.0% | V72G (GTG→GGG) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,521,817 | A→C | 10.4% | G68G (GGT→GGG) | yjhF ← | putative transporter |
| RA | 4,522,823 | A→G | 10.9% | S424S (TCT→TCC) | yjhG ← | putative dehydratase |
| RA | 4,553,235 | T→C | 9.4% | L112P (CTC→CCC) | uxuB → | D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,626,668 | A→C | 16.6% | T253P (ACC→CCC) | radA → | DNA repair protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 522892 | 523344 | 453 | 19 [18] | [15] 21 | [rhsD] | [rhsD] |
| * | * | ÷ | NC_000913 | 720883 | 721084 | 202 | 21 [18] | [18] 20 | [kdpE] | [kdpE] |
| * | * | ÷ | NC_000913 | 1465115 | 1465328 | 214 | 19 [18] | [14] 21 | ynbG | ynbG |
| * | * | ÷ | NC_000913 | 2773485 | 2773747 | 263 | 19 [18] | [18] 20 | yfjW | CP4‑57 prophage; putative inner membrane protein |
| * | * | ÷ | NC_000913 | 3769578 | 3769967 | 390 | 19 [8] | [18] 19 | [yibV]–[yibU] | [yibV],yibV,[yibU] |
| * | * | ÷ | NC_000913 | 4233750 | 4235444 | 1695 | 19 [18] | [17] 19 | pgi | pgi |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 838891 = | 89 (1.030) | 5 (0.060) | 4/410 | NT | 5.7% | coding (317/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein |
| ? | NC_000913 | 838921 = | 80 (0.970) | coding (287/678 nt) | ybiX | Fe(II)‑dependent oxygenase superfamily protein | |||||
| * | ? | NC_000913 | 1207790 = | 14 (0.160) | 66 (0.820) | 51/398 | NT | 75.9% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 29 (0.360) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 12 (0.140) | 84 (1.050) | 53/398 | NT | 80.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 29 (0.360) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 28 (0.340) | 23/414 | NT | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||