Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F9 I0 R1
|
177 |
96.4 |
2178490 |
87.4% |
1904000 |
226.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,680,185 |
T→G |
25.3% |
V256G (GTG→GGG) |
kdgK → |
2‑dehydro‑3‑deoxygluconokinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,680,185 | 0 | T | G | 25.3%
| 110.4
/ 5.4
| 77 | V256G (GTG→GGG) | kdgK | 2‑dehydro‑3‑deoxygluconokinase |
| Reads supporting (aligned to +/- strand): ref base T (16/36); new base G (15/7); total (34/43) |
| Fisher's exact test for biased strand distribution p-value = 4.35e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAGAAGAGACACAGCAGGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGT > NC_000913/3679948‑3680418
|
aagaaaAGCCACAGCAGGTGTCCCAACAAATGCTGGAATTCACGGATATCGCCTTCCTGACGCTGGAGGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTg < 1:350420/239‑1 (MQ=255)
acacAGCAGGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCggaa > 1:565598/1‑235 (MQ=255)
acacAGCAGGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGGGGATGGTCCGGCGGGGGAACCCGCGGAAGAAAAAGAGAGTGATa > 2:670813/1‑238 (MQ=255)
gcagGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAAATGCCGAAAGGAAAAATGATCGGTacacccc > 1:1008758/1‑234 (MQ=255)
gcagGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGAAAAAGGGATCGGTaccacc > 1:600765/1‑238 (MQ=255)
tgtACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGGGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGCAAAATGGATCGATaccacccgcacg > 1:608688/1‑233 (MQ=255)
tACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGGGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGGGGGGAAACTGCCCGAAGAAAAAAGGAACGATaccaccccggcggg > 2:783959/1‑231 (MQ=255)
aacaaaaaATGCTGGAATGCACGGAAATCGCCTTCCTGACGGTGGACGCCGAAGACGCGGTGGGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGc < 2:957718/237‑1 (MQ=255)
ccacaaATGCTGGAATGCACGGCTATCGTCTTCCGGACGCTGGCCGACGAAGACGCGCTGTGGGGTCCACAGCCGGTGGAAGACGTCATTGCGCGCACCCATATCGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGa < 1:1076826/237‑1 (MQ=255)
aacaaATGGTGGAATGCACGGATATCGACTTCCGGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGAc < 1:903424/239‑1 (MQ=255)
aaaTGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGGAAAAGGGATCGATACCACCGCAGCTGGCGAccct > 1:1010621/1‑239 (MQ=255)
gAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGGTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAggg > 1:1031205/1‑236 (MQ=255)
aaTGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACCCTTTCAGGGcc > 1:896174/1‑239 (MQ=255)
cACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATAACACCGCCGCCGGGGACCCTTTCAGGGCCgggg > 2:555147/1‑237 (MQ=255)
cACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGCGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAACGAAAAAGTGATCGTTACAACCGCAGCTGGCGGACCTTTCAGGGCCgggt > 1:448326/1‑237 (MQ=255)
aCGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGCAACCACCGCACCTGGCGACCCTTTCatggacgggta > 1:710992/1‑229 (MQ=255)
atacCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGc < 1:920956/229‑1 (MQ=255)
gCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGt < 1:1040603/239‑1 (MQ=255)
ccTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGGGGAAATGCCGAAAGAAAAAGTGATCGATACCCCCGCAGCTGGCGACACTTTCAGAGCCGGGTAACTGGCGGGAcaa > 2:68634/1‑236 (MQ=255)
ccTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGACTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGt > 1:867027/1‑238 (MQ=255)
ggcTGGGGGGGTAACGGCCGGGGGAGGGCTTCATGGCGGCTAACAATAACGGGGGGGGGAAGGAAGTGGGGGTGAAACGCGGGGCGGATTCTTGCCAGGTGGCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGAc < 2:25024/238‑1 (MQ=255)
cTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGCCTCTTTCAGTGCCGGTTTTCTGGCGGTACGTCGGACAGGCGGCAGCGCG‑GC‑AGCcgc > 1:438089/1‑239 (MQ=255)
taaCCGCCGGTGGAAGACGTCATTGCGCGCCCCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGAGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAAc < 2:1015021/237‑1 (MQ=255)
aaCAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGt < 1:743659/239‑1 (MQ=255)
aCAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGATACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGGCAGGCGGCAGCGCG‑GA‑AGGCgcggcgcaccggg > 1:858973/1‑232 (MQ=255)
aCAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGCAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACCCTTTCAGTGCCGGTTATCTGGCGGTACGTCTTACAGGCGGCGGCGCG‑GA‑AGACGCGGCGAAACggg > 1:942348/1‑237 (MQ=255)
ccGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGCAAGAAAAAGTGATCGATACCACCGCAGCTGGGGACCCTTTCCGGGCCGGTTATCTGGGGGTACCCCTTACAGGCGGGAGCGCG‑GA‑AGACGGGGGGAAAAGggggaa > 2:1046029/1‑237 (MQ=255)
cGTCATTGCCCCCACCCATAACGCGGGTGGGAAAGAATGGGGGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGc < 2:710992/237‑1 (MQ=255)
ttCAATGCGCGGCCCCAGAACGGGGGCGTGAAAGAAGGGGTGGTGAACCGGGGGGCGGATTCTTGCCTGGCGGCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAg < 1:798754/238‑1 (MQ=255)
ccccATAACGCGGGGGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCa < 1:173736/238‑1 (MQ=255)
aCCCATAACGCGGGCGTGAAAGAAGAGGTGGTGAAACTCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAAATGCCCAAAGAAAAAGAGATCGATACCACCGCCGCTGGCGACTCTTTTATGGCCGGTTATTTGGGCGACCGTCCAACAGGCGGCAG‑GCGCGA‑AGCCGCGGCCAAATGGGGGAGCCAGGCCGCCAGGAcctgtaacaa > 2:860439/1‑231 (MQ=255)
gggggggggAAAGGAGTGGTGGGGAAGCGCGGGGGGGATTTTTGCCTGGTGTCAATTGCGGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCgcgg < 2:947313/231‑1 (MQ=255)
cggggCGGTAAAGAGGGGGGGGGGAAACAGGGGGCGGTTTCGTTCCGGGTGTCCCTTGGTGAGAAAGTGTTAGGTGGTGTTCCGGCGGGGAATCTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACATCTGACAGGCGGAAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTAGCGTTATTCAGTATCgagg < 2:448326/237‑1 (MQ=255)
gggCGTGAAAGAAGGGGTGGTGAAACGGGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGCTATTCAGTATCgcgg < 1:670813/237‑1 (MQ=255)
ggCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCCCAACGACCGGTATTTCGTAACGCGgcgc > 1:259065/1‑239 (MQ=255)
ggCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTGATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGGATCCCGgcgc > 1:934758/1‑239 (MQ=255)
ggCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGAAAAAGGGATCGATACCCCCCCCGCGGGGGACTCTTTCCGTGCCGGTTATCTGGCGGTACGCCTGCAAGGCGGCAGCGCG‑GAGAGAC‑CGTCGAAAAGTGGGCACCCGCCCCCACGGACCCTAATTCAGAAttggggggg > 2:288435/1‑231 (MQ=255)
ggtggtgAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGt < 1:645313/238‑1 (MQ=255)
gggggtgAAACGGGGGGTGGTTTTTTGCCTGGGTGCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGGAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGt < 2:438089/235‑1 (MQ=255)
cggggggggggTTCTTGCCTGGTTGCCATTGCTGGGGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATGCCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGcc < 2:333536/236‑1 (MQ=255)
cgcgggtgcgtttCTGGCGTGGGGGCGATTGCTGGAGGAGGGTTGGGGGATGGTCCGGAGGGGAGACTGCCGAAAGAAAAAGGGGTCGATCCCCCCGCAGCTGGCGACTCTTTCAGGGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGcc < 2:121454/228‑1 (MQ=255)
gggCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGGATCGCGGCGCG‑ATTATCCCCCCGGAGGCGAGGCCCGcc > 1:12290/1‑238 (MQ=255)
ttCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCCGAAGGACCGTTATTCAGTATCGCGGCGCG‑CTTATCCCCCGTGAGGCGATGCCAGCGTCAAAgc > 1:649307/1‑239 (MQ=255)
ttttGCCTGGTGTCCATTGCGGGCGAAGGGTTAGTGGATGTTCCGGCGGGGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACgc < 2:867027/236‑1 (MQ=255)
tCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACgca < 1:880669/239‑1 (MQ=255)
tgtCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGGAACTGCCGAAAGAAAAAGGGATCGATACCACCCCAGCTGGCGACTCTTTCCGTGCCGGATATCTGGCGGTACCTCTGCCTGGCGGCAGCGGG‑GG‑AAACGCGGCGAAAAGTGGGACCCTGACCGCACGGACCGTTATTCAGTGTCCCGCGGCG‑GGCATCCCGCCGGAGGCGGAGCCCGCGAAAACgcaggcaatacaa > 2:319040/1‑230 (MQ=255)
tggccATTGGTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCa < 1:555147/235‑1 (MQ=255)
tCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGGGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCCCGTGAGGCGGTGCCCACGTAAAAGCAGCAAATGCaaaa > 1:732646/1‑239 (MQ=255)
cATTGCTGGCTAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAgg < 1:829001/239‑1 (MQ=255)
cATTGCTGGCGAATGGTTAGTTGATGTTCCGGCGGTTAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACGCTTTCAGGGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAgg < 1:736512/239‑1 (MQ=255)
cATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCCGTATCGCGGCCCG‑ATTATCCCGCGTGAGGCGATTCCCGCCGAAACGCAGCAATTGCCAAAg > 1:95165/1‑238 (MQ=255)
cATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGGTATTAAGTATCGCGGCGCG‑GTTATCCCGCCGGAGGCGATGCCCGCCTAAACGCAGCAAATGCcaaaag > 1:40677/1‑237 (MQ=255)
cTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGGACCTGACCGCAAGGACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCCCGTGAGGCGATGCCAGCGGAAACGCAGCCTATGCAAAAGGcgcgg > 1:814786/1‑235 (MQ=255)
gCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCCCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAAAGCAGCCTATGCAAAAAGCTGGGTaa > 1:833373/1‑239 (MQ=255)
gCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGGGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GG‑AGACGCGGCGAAACGTGGGCACCCGACCGCCAGTACCGGTATTCAGGATTCCGG‑GCGCATTAGCCCCCGGGAGGCGAGGCCCGGCTAAACACAGCAAATGAAAAAAGCAgggaaa > 2:25757/1‑235 (MQ=255)
tttgTGGATGTTCGGGCGGTGAAACGGCCGAAAGAAAAATGCATCCATCCCACCGCAGCTGGCGCCTCTGTCAAGGCCGGTTATCTGGGGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTa < 2:896450/235‑1 (MQ=255)
ttAGTGGATTGTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTa < 1:288435/238‑1 (MQ=255)
ttAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTa < 1:783959/238‑1 (MQ=255)
ttAGTGGAGTGTCCGGGGGTGAAACTGCCGAAAGAAAAAGTGATCGAGACCTCCGCAGCTGGCTACCGTTTCAGTGCCGGTTATCGGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTa < 1:111681/238‑1 (MQ=255)
tgggggtttgccGGCGGGAAAACTGCGGAAAGAAAAAGGTACCGAACCCCCCGGAGGCGGCGTCTCTTCGAGTGCCGGTTAGCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTAccc < 2:858973/229‑1 (MQ=255)
aGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCACCGGAAACGCAGCATATGCAAAAAGCTGGCTAAAGTGTTAcc > 1:392734/1‑238 (MQ=255)
tGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCg < 1:720350/141‑1 (MQ=255)
ggATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCct < 1:557312/238‑1 (MQ=255)
ggATGCTCCGGCGGTGAAACTGACGAAAGAAAAAGTGATCGATCCCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGGGGTACGTCTGACCGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCct < 1:754459/238‑1 (MQ=255)
gTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATc < 1:775355/239‑1 (MQ=255)
ggcggTGAAACCGCCGAAAAAAAAAGAGATCGATACCACCCCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGGACGTCGGACAGGCGGCAGCGCG‑GG‑AGACGCGGCGAAACGTGGGCACCTGGACGCAAGTACCGCTTTTCACCTTCCCGGCCAG‑ATTAATCCCCGCCAGGCGATGCCAGGGTCAACCCTGCACATGAAAAAAGCCGTATCAAGATTTACCCCCCATTCCAGc > 2:210074/1‑238 (MQ=255)
gggtaatcggCCGAAAGAAAAAGTGATCCATACCCCCGCAGCTGCCGCCTCTTTCAGGGCCGGTTTTCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCa < 2:95165/229‑1 (MQ=255)
ggTGAAACTGCCGAAAGAAAAAGTGATCGATCCCACCGGAGGTGGCGACTCTTTCAGGGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCa < 1:420048/238‑1 (MQ=255)
aaCTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATa < 1:336420/239‑1 (MQ=255)
aaCTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATa < 1:399025/239‑1 (MQ=255)
cTGGCGAAAGAAAAAGGTATCGATCCCACCGCAGGTGGCGCCTCTTTCAGTTCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGGGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATaaa < 1:666802/239‑1 (MQ=255)
cTGCCGAAAGAAAAAGTGATCGATACCACCGGAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATaaa < 1:195349/239‑1 (MQ=255)
cGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGTTAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATa > 1:170361/1‑237 (MQ=255)
aaaaGTTTTCGCTGCCCCCGCGGCTGGCGACTCTTTGCGTGCCGGTTATCGGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGAGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt < 2:932287/239‑1 (MQ=255)
aaaaGTGATCGATCCCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATgg < 1:1046029/238‑1 (MQ=255)
aaaaGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt < 1:814412/239‑1 (MQ=255)
aaaaGGTATCGATCCCCCCCCAGCTGGCGACTTTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCGGCTCATCCATAAATACCTGATGGt < 2:1010621/239‑1 (MQ=255)
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AAGAAGAGACACAGCAGGTGTACCAACAAATGCTGGAATGCACGGATATCGCCTTCCTGACGCTGGACGACGAAGACGCGCTGTGGGGTCAACAGCCGGTGGAAGACGTCATTGCGCGCACCCATAACGCGGGCGTGAAAGAAGTGGTGGTGAAACGCGGGGCGGATTCTTGCCTGGTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCG‑GA‑AGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCG‑ATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGT > NC_000913/3679948‑3680418
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
