Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A6 F27 I0 R1 98 139.2 2835800 97.9% 2776248 226.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,542,110 A→G 24.1% S161P (TCC→CCC)  narZ ← nitrate reductase 2 (NRZ), alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,542,1100AG24.1% 146.6 / 10.0 82S161P (TCC→CCC) narZnitrate reductase 2 (NRZ), alpha subunit
Reads supporting (aligned to +/- strand):  ref base A (38/22);  new base G (2/19);  total (40/42)
Fisher's exact test for biased strand distribution p-value = 2.31e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGTCAGGGC  >  NC_000913/1541872‑1542346
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             
tCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGa                                                                                                                                                                                                                                               >  1:145468/1‑239 (MQ=255)
tCCGGTACGTCGGTTTGCTCGCCCCAGGTCACCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGa                                                                                                                                                                                                                                               <  1:1088706/239‑1 (MQ=255)
         tCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGGTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGGTaa                                                                                                                                                                                                                                       >  1:648790/1‑238 (MQ=255)
          cGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATaaa                                                                                                                                                                                                                                      >  1:190364/1‑238 (MQ=255)
               tGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCCATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGGAACCGGCAACGCGATCCCGGCCGTAGGTTTTGATGGTCA‑CGA‑CGTTAGCGGCGGCAAACAAATGGGTTAGTTCCTTCCCATTTGGGGCGGAGAAA‑ccgc                                                                                                                                                                                                                                 >  2:459760/1‑236 (MQ=255)
                   cGCCCGAGGTGGTCGGGGAGGCGGGCGGCGGGTCGAAATCCAAGCG‑GTAGAAACTAAAACAGGGC‑CCGCCAAGCGGCGACAAATAACGGTTTCCGGGGGCGAAAGAACCCACCGACTTCGCGGGGATGGGCGAGAAACCGGCAGCGCAACCCGGGCCGTAGGTTTGGATGGTCC‑AGC‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TCCCAGTTGGAGCGGATAAA‑CCCGCCgcgc                                                                                                                                                                                                                           <  2:396825/239‑1 (MQ=255)
                   cGCCCCGGGCCATCGGGGGGGCGGGCGGCAGGTCAAAATACCAGTC‑GTAGAACCTAAAACAGGTG‑CCGCCAAGCGGCGACAGATACCGCGTTCCGGCGGCGAAAGAAACCACCGACACCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CTTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTGGGAGCGGATAAA‑CCCGCCgcgc                                                                                                                                                                                                                           <  2:1013135/239‑1 (MQ=255)
                             gagggggggggcgggggGGAGGCCCCAAT‑CCAGGCGGTAGAAACTAAAACAGGGG‑CCGCCAAGCGGGGCAAGATAACGCGTTCGGGGGGCGTAAGAACCCATCGAAACCGCCGGGATCGGCGAGAAACCGGAAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGTTTTAGTTCC‑TGCCAGTTGGAGCGAAAAAA‑CCCGCCGCGCCCACGCACtt                                                                                                                                                                                                                 <  2:287276/230‑1 (MQ=255)
                                cGGTGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGGTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCCCGCACttgtt                                                                                                                                                                                                              >  1:646218/1‑239 (MQ=255)
                                cGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCATTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCCGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACttgtt                                                                                                                                                                                                              >  1:203740/1‑239 (MQ=255)
                                                  gTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGGTTAGTTCC‑TGCCCGGTTGAGCGGGTAAA‑CCCGCCGCGCCCACACCCCTGTTTTTCGCTCCAGCAGtttt                                                                                                                                                                                            >  2:19044/1‑239 (MQ=255)
                                                  gTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGGCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTTC‑TGCCAGTTGGAGCGGGTAAA‑CCCGCCCCGCCCACCCACTTGTTTGTAGCTCAGGCACtttt                                                                                                                                                                                            >  2:322363/1‑239 (MQ=255)
                                                       aaaaCCAGTC‑GTAAAAACTAAAACAGGGG‑CCGCCAAGCAGCGACAGATAAGGCGTCCCGGCGGCGGAAGAACCCAGCGACATCGCCGGGATCGGGGAAAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGa                                                                                                                                                                                       <  2:1311234/236‑1 (MQ=255)
                                                            cAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCCGCCGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCCCTTTTGCGGATCGt                                                                                                                                                                                   >  1:738141/1‑238 (MQ=255)
                                                              gTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAAACATCGACATCGACGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGCCAATCAACTGGTTTAGTTCC‑TGCCAGTTGGGGCGGGTAAA‑CCCGCCCCGCCCACGCACTTGTTTGTGGGTCAGTGACCTTTGCGCATCGTTct                                                                                                                                                                                >  2:1296748/1‑238 (MQ=255)
                                                                  gTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATaa                                                                                                                                                                             >  2:343825/1‑239 (MQ=255)
                                                                          ttAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGGTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCCCTTGTTTTTAGATCAGGCACTTTTGCGGGTCGTTCATAAGCGATGc                                                                                                                                                                      >  2:1144667/1‑238 (MQ=255)
                                                                           tAAACAGGGGCCCCCCAAGCCGCCACAGAAACCCGGTTCGGGCGGCGAAAAAAACCAGCGACAGCGCGGGGAGGGGCGAAAAACCGGCAGCGCGACCGGGGCCGGAGGTTTGGAGGGCCC‑AGA‑CGTTAGCGGCGGCAATCAGTTGTTTTAGTTCC‑TGCCAGTGGGAGCGGAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGcc                                                                                                                                                                     <  2:1322891/239‑1 (MQ=255)
                                                                           aaaaacggggcccgccAAGCAGCGACAGATACCGCGTTCCGGCGGCGAAAGAACCCATCAACATCGCGGGGATCGGGAAGAAGCCGGCAACGCGACCGGGGCCGTGGGTTTTGAGGGCCA‑AGC‑CGTAGGGGGGGGAAATCAGCGGTTTTAGTCCC‑TCCCGGTGGGAGGGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGcc                                                                                                                                                                     <  2:98263/228‑1 (MQ=255)
                                                                             aaCAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCGCTTTTGCGGATCGTTCATAATCGATGCCCa                                                                                                                                                                   >  2:645497/1‑238 (MQ=255)
                                                                               cgggTC‑CCGCCAGGGGGCGAAAAAAAACGGGTGCGGGGGGGGTAAGAAACCACCGACCCCGCGGGGTTCGGGGAAAACCCGGAAACGGGATCCGGGCGGTAGGTTTGGTGGGCCC‑AGA‑CGTTGGCGGCGGCAACCGGCTGGTTTAGTTCC‑TGCCAGTTGGGGGGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGc                                                                                                                                                                <  2:1340241/237‑1 (MQ=255)
                                                                                cggggcccgcaAGGCGGCGAAAGAAAACGCGTTCCGGCGGCGAAAAAACCCACCGACATCGCGGGGAGGGGCGAAAACCCGGCAACGCGACCGGGGCGGTAGTTTTTGAGGGCCC‑AGA‑CGTTGGGGGCGGCAATCAGCTGTTTTAGTTCC‑TGCCAGTGGGGGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGc                                                                                                                                                                <  2:646218/233‑1 (MQ=255)
                                                                                  gTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑Cccgcc                                                                                                                                                                                                                               >  1:188415/1‑173 (MQ=255)
                                                                                  gTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCCCTTTTGCGGATCGTTCCTAATCGATGCCCACGCCAg                                                                                                                                                             >  2:1306564/1‑239 (MQ=255)
                                                                                  gTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAg                                                                                                                                                             >  1:546914/1‑239 (MQ=255)
                                                                                    g‑ccgccAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAgg                                                                                                                                                            >  2:55631/1‑237 (MQ=255)
                                                                                    g‑ccgccAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGt                                                                                                                                                            >  1:31487/1‑238 (MQ=255)
                                                                                        gccAAGCAGCGACAGATACGGCGTTCCGGCGGCGAAAGAACCCATCGACACCGCCGGGATCGGCGAGAACCCGGCACCGCGATCCGGGCCGTAGGTTTGGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCGGGTTTAGTCCC‑TGCCAGTGGGAGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCg                                                                                                                                                        <  2:431097/239‑1 (MQ=255)
                                                                                           agccagcGACAGAGAGCGTGTTCGGGGGGCGAAAAAACCCCTCGAATTCGCCGAGACGGGCGAGAAACGGGCACCGCGTTCCGGGCTGAGGGTTTTAATGGCCC‑AGA‑CGTTAGCGGCGCCAACCAGCGGTTTTATTTCC‑TGCAATTGGGAGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGAt                                                                                                                                                     <  2:219054/236‑1 (MQ=255)
                                                                                             cggcggACAGATACCGGGTCCCGGCGCCGAAAAAAACCACCGCCATCGCGGGGACGGGGGAGAACCCGGCACCGCCACCCGGGCGTTAGGTTTTGATGGCCC‑AGA‑CGTTAGCGGCGCCAACCGGCTGTTTTAGTTCC‑TGCCAGTGGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGAt                                                                                                                                                     <  2:137203/232‑1 (MQ=255)
                                                                                               agcGACAGATAACGCGTTCGGGCGGCGTAAGAACCCAGCGACAGCGCGGGGATCGGCGAGAACCCGGCAACGCGATCCGGGCGGTAGGTTTTGAGGGCCC‑AGA‑CGTTGGCGGCGGCAACCAGCGGGTTTAGTTCC‑TGCCAGTGGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGc                                                                                                                                                  <  2:648790/238‑1 (MQ=255)
                                                                                                       aTAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCt                                                                                                                                         >  1:396565/1‑239 (MQ=255)
                                                                                                        tAACGCTTTCCGGCGGGGAAAGAAACCACCGACACCGCCGGGACCGGGAAAAAACCGGCAACGCGTTCGGGGCCGTGGTTTTTGATGTCCC‑AGA‑CTTTAGGGGCGGCAATCAGCTGTTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCtt                                                                                                                                        <  2:1120386/239‑1 (MQ=255)
                                                                                                        tAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCCCAGGCACTTTTGCGGATCGTTCATAATCGATCCCCACGCCAGTACTGGATCGCTGTGTTTCtt                                                                                                                                        >  2:479709/1‑239 (MQ=255)
                                                                                                           cgcgTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTg                                                                                                                                           >  1:137203/1‑233 (MQ=255)
                                                                                                           cgcgTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAg                                                                                                                                     >  1:84913/1‑239 (MQ=255)
                                                                                                                tCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGTGCt                                                                                                                                 >  1:1349664/1‑238 (MQ=255)
                                                                                                                 ccGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCttg                                                                                                                               >  1:984061/1‑238 (MQ=255)
                                                                                                                 ccGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTc                                                                                                                               >  2:142840/1‑239 (MQ=255)
                                                                                                                 ccGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGGGTTGCTTGAGGGCTTc                                                                                                                               >  1:1338453/1‑239 (MQ=255)
                                                                                                                 ccGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGCTTAGTTTC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCCCGCACCTGTTTGTAGCTCCGGCACTTTTGCGGATCGTTCATAATAGATGCCCACGCCAGTCCCGGATCGCTGTGTCGCTTgtagtcctc                                                                                                                               >  2:988427/1‑231 (MQ=255)
                                                                                                                  ggggggcgTAAGAACCCAGCGCCACCGCCGGGAGCGGCGAGAAACCGGAAACGCGACCCGGGCGGGAGGTTTGGAGGGTCC‑AGA‑CTTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCAAGTGGGGGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTcg                                                                                                                              <  2:251052/235‑1 (MQ=255)
                                                                                                                      ggcaaaaGAAACCAGGGACGGCGCCGGGACCGCGGAAAACCGGGAAACGCGA‑CCGGGCCGTTGGGTTTGGGGGGCCAAGC‑CGTTGGGGGGGCCAATCAGCGGTTTGATTCCC‑GGCCAGTGGGGGCGGAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCgcgc                                                                                                                           <  2:712052/233‑1 (MQ=255)
                                                                                                                          tAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAg                                                                                                                      >  1:1311333/1‑239 (MQ=255)
                                                                                                                           aaGAAACCACCGACATGGCGGGGACCGGCGGAAAACGGGCACCGGGATCGGGGCCGTAGGTTTGAATGTCCC‑AGC‑CGTTAGGGGGGCAAATCGGCTGGTTTAGTCCC‑TGCCAGTTGGGGGGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGt                                                                                                                     <  2:1301997/239‑1 (MQ=255)
                                                                                                                                    tCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCCCAGTTCAATCAg                                                                                                             >  1:701024/1‑238 (MQ=255)
                                                                                                                                         aTCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGttt                                                                                                       >  2:1084244/1‑239 (MQ=255)
                                                                                                                                                  aggggggagaAACGGGCACGGGGACCGGGGCGGAGGGTTTTGAGGGCCA‑AGC‑GGTAAGCGGGGGAAACCGGCTGGTTAAGTTCC‑GGCCGGTGGGGGCGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGa                                                                                               <  2:84913/232‑1 (MQ=255)
                                                                                                                                                   gggggaaaaaaCCGGCACGGCGACCCGGGCGGTAGGTTTGGATGGTCA‑AGA‑GGTAAGGGGCGGAAAGCAGCGGGTTTATTTCC‑TGCAAGTTGGGGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAg                                                                                              <  2:738141/230‑1 (MQ=255)
                                                                                                                                                      gggaaaaaCCGGCGCGGCGAGCGGGGCGGTGGTTTTTGTGGGTCA‑AGA‑CGTGAGCGGCGGCAATCGGTGGGTTTAGTTCC‑GGCCAGTGGGGGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCgg                                                                                           <  2:31487/233‑1 (MQ=255)
                                                                                                                                                        gagaACCCGGCACGGGGATCGGGGCCGTAGGTTTTGATGG‑GC‑AGACCGTTGGCGGCGGCAATCGGCTGGTTTAGTTCC‑TGCCAGTTGGGGCGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGt                                                                                         <  2:701024/238‑1 (MQ=255)
                                                                                                                                                                   aaggcgATCCGGGCCGTGGTTTTTGATGGTCC‑AGA‑CGTGAGCGGCGGCAATCAGCTGGTTTAGTTCC‑GGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGt                                                                             <  1:1378543/236‑1 (MQ=255)
                                                                                                                                                                      gcgATCCGGGCCGTAGGTTTTGATGGTCC‑GAA‑CGTTAGCGGCGGCAATAAGTTGTTTTAGTTCC‑TGCCAGTTGGAGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGt                                                                             <  1:1262320/236‑1 (MQ=255)
                                                                                                                                                                      cgacgctgggCGGTGGGTTTGGAGGGCCC‑AGA‑CGTTGGCGCCGGCAACCAGC‑GGTTTTGTTCC‑CGGCCGTTGGGGGCGATAAACCCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAg                                                                          <  2:190364/232‑1 (MQ=255)
                                                                                                                                                                         gcccGGGGTGTGGGTTTGGGTGGTCC‑AGG‑CTTGAGCGGGGGCAATCAGGTGTTTTATTCCC‑TGCCAGTTGGAGGGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgcg                                                                        <  2:3630/236‑1 (MQ=255)
                                                                                                                                                                         acccGGGCCGTAGTTTTTGAGGGCCC‑AGG‑CGTTAGCGGGGGCAATCAGCTGGTTTATTTCC‑TGCCAGTGGGGGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgcg                                                                        <  1:263366/236‑1 (MQ=255)
                                                                                                                                                                          tCCGGGCCTTAGGTTTTGATGGTCC‑AGC‑CTTTAGCGGCGGCAATCGGTGGGTTTAGTTCC‑TGCCAGTTGGAGCGAATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCt                                                                      <  1:1115534/239‑1 (MQ=255)
                                                                                                                                                                          tCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgc                                                                         >  1:180481/1‑236 (MQ=255)
                                                                                                                                                                                    cggTTTTGAGGGTCC‑GGC‑CGTTACCGCCGCCAACGAGTGGTTTTAGTCCT‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATAc                                                            <  1:370743/238‑1 (MQ=255)
                                                                                                                                                                                    aGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATa                                                             >  2:485192/1‑238 (MQ=255)
                                                                                                                                                                                     gttttgGATGGCCC‑AGG‑CGTTAGGGGCGGCAATCAGGTGTTTTAGTTCC‑GGCCAGTTGGGGCGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATAc                                                            <  2:1311333/236‑1 (MQ=255)
                                                                                                                                                                                         ttGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGa                                                                                                                                                      >  1:985473/1‑144 (MQ=255)
                                                                                                                                                                                         ttGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGa                                                       >  2:1017524/1‑239 (MQ=255)
                                                                                                                                                                                         ttGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGa                                                       >  1:70935/1‑239 (MQ=255)
                                                                                                                                                                                         ttGAGGTTCC‑AGA‑CGTTGGCGGCGGCAACCAGGTGTTTTAGTTCC‑GGCCAGTTGGGGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTGCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGa                                                       <  1:479709/239‑1 (MQ=255)
                                                                                                                                                                                               gTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACt                                                 >  2:789161/1‑239 (MQ=255)
                                                                                                                                                                                                      a‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGcc                                           >  1:1213369/1‑239 (MQ=255)
                                                                                                                                                                                                            aGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTTCTTGAGGGCTTAGCGCCACCGTTCAATCAGTCGTTTCCGACTGAGCGGGTATTTCAGGCGGTTAGCGGTGTAAAGATACCAGGAGGCACTTGCGGCAcgcg                                      >  1:1397183/1‑239 (MQ=255)
                                                                                                                                                                                                            aGCGGCGGCAATCAGCCGGTTTAGTTCC‑TGCCAGCTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGCTTGTAGCTCAGGCACTTTTTCGGATCGTTCATAATCGATGCCCACGCCAGCACCGGGTCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGCTCAATCCGCCGTTTACGAATGCGCGGGTATTTCAGGCGGTTAGCGACGTGAAGATACACGGAGGAACTTgctcgacccc                                      >  2:916516/1‑231 (MQ=255)
                                                                                                                                                                                                                   gcAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGcc                               >  1:1047331/1‑239 (MQ=255)
                                                                                                                                                                                                                    aaaTCAGCGGGTTTTGTTCC‑GGCCAGTTGGAGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcg                              <  1:887595/238‑1 (MQ=255)
                                                                                                                                                                                                                      ataggttGGTTTAGTCCC‑GGCCGGTGGGGGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  2:984061/233‑1 (MQ=255)
                                                                                                                                                                                                                      agcAGCTGGTTAAGTGCC‑TGCCATTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  1:825953/237‑1 (MQ=255)
                                                                                                                                                                                                                      accggtgggTTTATTTCG‑TGCCGTTGGGAGGGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  2:180481/232‑1 (MQ=255)
                                                                                                                                                                                                                      aTCAGCTGGTTTGGTGCC‑GGCGAGTTGGGGCGGAAACA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  2:496662/239‑1 (MQ=255)
                                                                                                                                                                                                                      aTCAGCTGGGTTATTCCG‑TGCCAGTTGGTGGGGATAAT‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTGCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  1:117745/239‑1 (MQ=255)
                                                                                                                                                                                                                      aTCAGCTGCTTTAGTTCG‑TGCCAGTTGGAGCGAATAAT‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                            <  1:197524/239‑1 (MQ=255)
                                                                                                                                                                                                                               tttAGTTCC‑TGCCTGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCAt                    <  1:343825/238‑1 (MQ=255)
                                                                                                                                                                                                                                ttAGTCCC‑TGCCAGGTGGGCGGGAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGa                  <  2:936071/239‑1 (MQ=255)
                                                                                                                                                                                                                                     tCC‑TGCGAGTTGGGGCGAATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCATTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTggg             <  1:1306564/239‑1 (MQ=255)
                                                                                                                                                                                                                                            cAGTGGGGGCGGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGt        <  1:322363/238‑1 (MQ=255)
                                                                                                                                                                                                                                            cAGTGGGGGCGAATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGt        <  1:823504/238‑1 (MQ=255)
                                                                                                                                                                                                                                               ttGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGTCAgg    >  1:141076/1‑239 (MQ=255)
                                                                                                                                                                                                                                                  gAGCGGATAAC‑CCCGCCGCGCCCACTCATTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGTCAGGGc  <  1:909160/238‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                             
TCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTC‑GTAGAAACTTAAACAGGTG‑CCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCC‑AGA‑CGTTAGCGGCGGCAATCAGCTGGTTTAGTTCC‑TGCCAGTTGGAGCGGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGGTCAGGGC  >  NC_000913/1541872‑1542346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A