Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F28 I0 R1	91	172.1	3477528	97.2%	3380157	226.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,542,110	A→G	20.7%	S161P (TCC→CCC)	narZ ←	nitrate reductase 2 (NRZ), alpha subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,542,110	0	A	G	20.7%	138.5 / 4.9	76	S161P (TCC→CCC)	narZ	nitrate reductase 2 (NRZ), alpha subunit
Reads supporting (aligned to +/- strand): ref base A (36/21); new base G (2/15); total (39/37)
Fisher's exact test for biased strand distribution p-value = 2.19e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGG  >  NC_000913/1541872‑1542339

tCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGa                                                                                                                                                                                                                                         <  2:1024390/239‑1 (MQ=255)

tCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCCGGGTTAGTTTCT‑GCCCGTTGGa                                                                                                                                                                                                                                         >  2:27296/1‑239 (MQ=255)

            gTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGGTCCT‑GCCCGTTTGAGC‑GGATCAA‑ccc                                                                                                                                                                                                                           >  1:454895/1‑239 (MQ=255)

                 cTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGGTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑TCCCGTTGGAGC‑GGATAAA‑Cccgcccc                                                                                                                                                                                                                      >  1:963041/1‑237 (MQ=255)

                   ccccccAGGCCGTCGGGGAGGCGGGCGGCAGGC‑CGCAATACCAGACGTAGAAACTTAAACAGGCGCCGCCAGGCCGCGACAAATAACGCGTGCGGGCGGCGTAAGAACCCGCCGACCTCGCGGGGATCGGAGAGAAACC‑GG‑CAACGCGCCCCGGGCCGTAGTTTTGGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCAAGTGGGAGC‑GGATAAA‑CCCGCCgcgc                                                                                                                                                                                                                    <  2:1305505/237‑1 (MQ=255)

                      cccAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTCCCGGCGGCGTAAGAACCCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCa                                                                                                                                                                                                                 <  1:689983/239‑1 (MQ=255)

                        acggTTATCGGCGAGGCGGGCGG‑AGGTCCGCATAACCAGTCGGAGAAACTAAAAAGGGGCCCGCCAAGCAGCGACAAATAACGCTTCCCGGCGGCTTAAGAACCCATCGACATCGCCGGGATCGGCGAAAACCC‑GG‑AACCGCGACCCGGCCCGTGGTTTTTGAGGGCCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGGGC‑GGAAAAA‑CCCGCCGCGCCCACg                                                                                                                                                                                                               <  2:976320/237‑1 (MQ=255)

                         aGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGGTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGc                                                                                                                                                                                                              >  1:773113/1‑239 (MQ=255)

                           gtacggggggAGGCGGGCGGGAGGC‑CGCAATCCCGGTCGTAGAAACTTAACCAGGTCCCCCCAGGAGGCGACAGATACCGCGTCCCGCGGGCGTAAAAAACCAGCGACAGCGCGGGGAGCGGCGAGAAACC‑GG‑CACCGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACg                                                                                                                                                                                                               <  2:1713495/227‑1 (MQ=255)

                           gcatgcggcggGGCGGGGGGAAGGT‑CGAAATCCCAGTCGGAGAACCTTAAACAGGTCCCGCCAGGCAGCGACAGAGACCGCGTTCCGGCGGCGTAAGAACCCATCGACATCGCCGGGATCGGCGAGAACCC‑GG‑CAACGCGATCGGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCG‑GCCAGTTGGGGC‑GGATAAA‑CCCGCCGCGCCCACGCa                                                                                                                                                                                                             <  2:1690445/233‑1 (MQ=255)

                            tcgccggcggGGGGGGCGGCAGGT‑CCAAATCCCAGGCGTAGAAACTTAAACGGGTGCCCCAAACCGGCGACAGAAACCGCGTCCGGGCGGCGAAAGAACCCAGCGACACCGCGGGGACCGGCGAGAACCC‑GG‑CACCGCGATCCGGCCGGAAGTTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTGGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCAc                                                                                                                                                                                                            <  2:957226/234‑1 (MQ=255)

                             cATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAAAGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACtt                                                                                                                                                                                                          >  1:910520/1‑239 (MQ=255)

                               tCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGGTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACttgt                                                                                                                                                                                                        >  1:1036023/1‑239 (MQ=255)

                                cGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCCCttgtt                                                                                                                                                                                                       >  1:976320/1‑239 (MQ=255)

                                cGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGGTTTGATGGTCCAGACGTTAGCGGCGGCCATCCGCCGGTTTTAGTCCT‑TGCAGTTTGGGC‑GGGTAAA‑CCCCCCCCGCCCACCCCCctgtt                                                                                                                                                                                                       >  2:1143216/1‑239 (MQ=255)

                                      ggcgggcgGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGGTCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAg                                                                                                                                                                                                  >  1:641836/1‑238 (MQ=255)

                                                aGGT‑CGCAATACCAGTCGTAAAAACTAAAACAGGTCCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAACCCATCGACATCGCCGGGATCGGCGAGAACCC‑GG‑CAACGCGTTCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACt                                                                                                                                                                                        <  1:1332910/238‑1 (MQ=255)

                                                  gT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAg                                                                                                                                                                                                                                        <  2:728465/190‑1 (MQ=255)

                                                  gT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAg                                                                                                                                                                                                                                        >  1:728465/1‑190 (MQ=255)

                                                          tACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCACTCCGCTGGTTTAGTTCCT‑GCCAGTTGGGGC‑GGATAAA‑CCCGCCGCGCCCACGCCCTTGCTTGTAGCCCAGGCAATTTTGCCGATc                                                                                                                                                                              >  2:1103639/1‑239 (MQ=255)

                                                               gTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCa                                                                                                                                                                         >  1:1100658/1‑239 (MQ=255)

                                                               gTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCa                                                                                                                                                                         >  1:640418/1‑239 (MQ=255)

                                                                  gTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGATTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTCCTGATCGTTCATaa                                                                                                                                                                      >  2:1715532/1‑239 (MQ=255)

                                                                    aGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATc                                                                                                                                                                    >  1:1122435/1‑239 (MQ=255)

                                                                     caaccaaaaaCGGGCGCCGCCAGCCGGCGACAGAAAACGCGCTCCGGGGGCGTAAGAACCCCCCTCCACCGCGGGGACCGGCGAAAACCC‑GG‑CAACGCAATCGGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCGGGTTTAGTCCCT‑GCCAGTTGGCGG‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCg                                                                                                                                                                   <  2:1243768/232‑1 (MQ=255)

                                                                       aaCTAAACCCGGTCCCGCCAGGCAGGAACAGATAACGCGTGCCGGCGGCGTAAGAACCCACCGACATCGCCGGGGCCGGCGAGAACCC‑GG‑CAACGCGATCCGGGCCGTAGTTTTTGATGGCCCAGCCGTTAGCGGCGGCAATCGGCTGGTTTAGTTCCT‑GCCATTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCg                                                                                                                                                                   <  2:1600823/237‑1 (MQ=255)

                                                                          ttAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACtt                                                                                                                                                                                                          >  1:161314/1‑195 (MQ=255)

                                                                          gtaaccgggTGCCGCCAAGCGGCGCCAAAAAACGCGTTCCGGGGGCTAAAGAAACCATCGACAGCGCGGGGATGGGCGAGAAACG‑GG‑CACCGCGTCCGGGGCGGTAGGTTTTGAGGGTCCAGCCGTGGGCGGCGGCAGTCGGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAC‑CCCGCGGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGcc                                                                                                                                                              <  2:910520/232‑1 (MQ=255)

                                                                             aaCAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTTCGGATCGGTCATAATCCATGCCCa                                                                                                                                                            >  2:121721/1‑238 (MQ=255)

                                                                                   tGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGt                                                                                                                                                     >  2:555000/1‑239 (MQ=255)

                                                                                   tGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGt                                                                                                                                                     >  1:780492/1‑239 (MQ=255)

                                                                                   ggccccaaaGCAGCGAAAAAAACCGCTTCCCGGCGGGGAAAAAACCCACCACCACCGCGGGGACGGGCGAAAAACC‑GC‑CAACGCGACCCGGGCCGTAGTTTTTGAGGGCCAGGACGTTAGCGGCGGCAATCAGCTGTTTTAGTCCCT‑GCCAGTTGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGc                                                                                                                                                         <  2:1122435/228‑1 (MQ=255)

                                                                                    gccgccAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGGTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGGTCGTTCATAATCTATGCCCACGCCCGt                                                                                                                                                     >  2:1151829/1‑238 (MQ=255)

                                                                                            gcagcGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCCGTACCGGATc                                                                                                                                             >  2:1721946/1‑238 (MQ=255)

                                                                                             cagcGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGCGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGGTTGTAGCCCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGCTc                                                                                                                                             >  2:920960/1‑237 (MQ=255)

                                                                                                 gACAGATAACGCGTTCCGGCGGCGAAAAAAACCTGCGGCCTGGGCGGGACGGGGGAGAACCC‑GG‑GCACGGGACCGGGGCCGTAGGTTTGGATGGTCCAGCCGTTAGCGGCGGCAACCACCTGTTTTAGTTCCT‑GCCAGTTGGGGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCtgt                                                                                                                                        <  2:1570700/238‑1 (MQ=255)

                                                                                                  aCAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTa                                                                                                                                                    >  1:1712518/1‑225 (MQ=255)

                                                                                                          cgcgTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCCCTTGTTTGTAGCTCAGGCCCTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTGGCTTGAg                                                                                                                              >  1:39534/1‑239 (MQ=255)

                                                                                                             gTTCCGGCGGCGTAAGGAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCCATCAGCAGGTTTAGTTCCT‑GACAGTTGGAAC‑GGATAAA‑CCCGCCGCCCCCACGCACTTGTTTGTAGCACCGGCACTTTTTCGGTTCGATCTTAATCGCTGCCCACGCCAATACCGGATCGCGGTGTGCCTTGAgg                                                                                                                             >  2:170036/1‑237 (MQ=255)

                                                                                                              ttCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCt                                                                                                                          >  2:586422/1‑239 (MQ=255)

                                                                                                               tCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGAAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGTTCGTTCATAATCGCTGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGTGGGCt                                                                                                                          >  2:994722/1‑238 (MQ=255)

                                                                                                                   gcggcgTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTcgc                                                                                                                      >  1:1255057/1‑238 (MQ=255)

                                                                                                                      ggaaagaaaaCCGTCGCCATCGCGGGGGGCGGGGAGAAACG‑GG‑AACCGCGTCCGGGGCCGTTGTTTTTGATGGCCCAGGCGTGAGCGGCGGAAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGcc                                                                                                                   <  2:1176277/231‑1 (MQ=255)

                                                                                                                         tAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCCTAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAg                                                                                                               >  2:858389/1‑239 (MQ=255)

                                                                                                                                 cATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCCGTACCGGGTCGCTGTGTTTCTTGAGGGCTTTGCGCCACAGTTCAATCa                                                                                                       >  2:1447926/1‑239 (MQ=255)

                                                                                                                                 cATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACCCCAGTACCGGATCGCTGTGTTg                                                                                                                                    >  1:615938/1‑210 (MQ=255)

                                                                                                                                  tccGACATCGCGGGAATGGGCGAGAAACC‑GG‑AAACGGGATCGGGGCCGTGGGTTTTGACGGTCCAGACGTAAGCGGCGGCAATCAGTTGGTTTAGTTCCG‑GCCAGTGGGAGG‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAg                                                                                                      <  1:68100/237‑1 (MQ=255)

                                                                                                                                    cGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTc                                                                                                    >  1:1725547/1‑239 (MQ=255)

                                                                                                                                          cGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGa                                                                                                                                               >  1:982825/1‑190 (MQ=255)

                                                                                                                                                     ggggaaaaCCGGG‑CAACGCGATCCGGGCGGTAGTTTTTGAGGGCCCGGAGTTTGGCGGCGGCAATCAGCTGTTTTAGTTCCT‑GCCAGTTGGGGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCgg                                                                                    <  1:273035/234‑1 (MQ=255)

                                                                                                                                                      ccggaAACC‑GGCCACCGGGACCCGGGCGGTGGGTGTTGAGGGCCCAGCGGTTAGGGGCGGCACTGGGCTGGTTTAGTCCCT‑GCCAGTGGGGGC‑GAATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCgg                                                                                    <  2:456930/235‑1 (MQ=255)

                                                                                                                                                                    cacggtacccGGGCGGTGGGTTTTGAGGGCCCAGGCGTTAGCGGCGGCAATCGGCTGTTTTAGTTCCG‑GCCAGTTGGGGC‑GGAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGt                                                                      <  2:780492/231‑1 (MQ=255)

                                                                                                                                                                       gcgATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCGGCTGGTTTATTTCCT‑GCCAGTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAg                                                                   <  1:1103639/239‑1 (MQ=255)

                                                                                                                                                                           tCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTCCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgcgc                                                                <  1:624034/238‑1 (MQ=255)

                                                                                                                                                                           gccGGGCTGTAGGTTTGGAGGGGCAAGCCGTGGGCGGCGGCACTCAGCGGGTTTATTTCCG‑GCTGGTGGGGGC‑GAAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCt                                                               <  2:1111248/238‑1 (MQ=255)

                                                                                                                                                                           ccgggtctgTAGTTTTGGATGGCCCAGACGTTAGCGGCGCCACTCAGCTTGTTTGGTTCCT‑CCTAGTTGGGGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCt                                                               <  2:459661/231‑1 (MQ=255)

                                                                                                                                                                           cccGGGCGTTAGGTTTTGATGGTCCGAACGTTAGCGGCGCCAACCGGCT‑GTTTACGTCCTGGCCAGTTGGAGC‑GAATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgcgc                                                                <  1:843621/237‑1 (MQ=255)

                                                                                                                                                                                 cggtggttttgGAGGGCCCAGACGTTAGCGGGGGCAATCGGTTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTaaa                                                          <  1:27296/231‑1 (MQ=255)

                                                                                                                                                                                 ccGTGGGTTTTGATGGTCCAGCCGTTAGCGGCGGCAATAAGCTGGTTTAGTTCCT‑GCCAGTTGGAGG‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTaaa                                                          <  1:940026/238‑1 (MQ=255)

                                                                                                                                                                                 ccGTGGGTTTGGATGGTCAAGGCGTTAGCGGCGACAATCAGCTGGTTTAGTGCCT‑GCCAGTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTaaa                                                          <  1:1544546/238‑1 (MQ=255)

                                                                                                                                                                                  ggggggTTTTGGTGTTCAAGCCGTTAGCGGGGGCAATGAGGTGGTTGAGTTCCG‑GCAGGTGGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGa                                                        <  1:1517856/235‑1 (MQ=255)

                                                                                                                                                                                     aGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATAc                                                     <  1:555000/239‑1 (MQ=255)

                                                                                                                                                                                     aGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGAGCTGTAAAGATa                                                      >  1:737393/1‑238 (MQ=255)

                                                                                                                                                                                     aGGTTTTGAGGGCCAAGACGTTAGCGGCGGCAACCAGCTGGTTTAGTTCCT‑CCCAGTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATa                                                      <  1:1143216/238‑1 (MQ=255)

                                                                                                                                                                                       gTTTTGATGGTCGACACGTAAGGGGGGAGAAGCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAgcg                                                                 <  2:355764/225‑1 (MQ=255)

                                                                                                                                                                                        tttgggtGGTCCAGACGTTAGGGGCGGCAATCAGTTGGTTTATTCCCT‑GCCAGTTGGAGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCa                                                   <  2:632340/232‑1 (MQ=255)

                                                                                                                                                                                                 tCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTATGGCTGTAAAGATACCAGGGGTAACtt                                         >  2:1510957/1‑239 (MQ=255)

                                                                                                                                                                                                 tCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGAt                                                       >  1:355764/1‑225 (MQ=255)

                                                                                                                                                                                                 tCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACtt                                         >  1:632340/1‑239 (MQ=255)

                                                                                                                                                                                                           aGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGCTCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTGTTTCAGGCGGTTAGCGCTGTAACGATACCTGGAGTAACTTGCGcccctgc                               >  2:822271/1‑234 (MQ=255)

                                                                                                                                                                                                           aGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGAACTTGTTTGTAGCTCAGGCACTTTTGCGGAACGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGATTCGCGCCACAGTTCACTCAGTCGGTTACGGATGAGCGGGTCTTTCAGGCGGTTAGCGCTGGAAAGAAACCAGGAGTAAATTGCGCGCcgcg                               >  2:1532861/1‑239 (MQ=255)

                                                                                                                                                                                                                     aTCAGTTGGTTTGGTTCCG‑GCCAGTTGGGGC‑‑GATAAACCCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCCCTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                     <  1:1090988/239‑1 (MQ=255)

                                                                                                                                                                                                                     aTCAGCTGGTTTGGTTCCG‑TCCAGTTGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTGGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                     <  2:1036023/239‑1 (MQ=255)

                                                                                                                                                                                                                       cAGCTGGTTTATTCCCG‑GCGGTTTGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgcg                     <  2:524778/237‑1 (MQ=255)

                                                                                                                                                                                                                              tttAGTTCCT‑GCCAGGTGGAGC‑GAAAAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCAt             <  1:1673381/238‑1 (MQ=255)

                                                                                                                                                                                                                               ttAGTGCCG‑GCCAGTTGGGGC‑GGATAAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGa           <  2:640418/239‑1 (MQ=255)

                                                                                                                                                                                                                               tatgTTCCT‑G‑CTGTTGGAACAGGATCAC‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATGCCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGa           <  2:592525/236‑1 (MQ=255)

                                                                                                                                                                                                                                         gCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAgg  >  1:592525/1‑239 (MQ=255)

TCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGT‑CGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACC‑GG‑CAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCT‑GCCAGTTGGAGC‑GGATAAA‑CCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGCGAGGTTCATGATTGGGCAGG  >  NC_000913/1541872‑1542339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A