Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F17 I0 R1 79 154.6 3079696 97.7% 3008862 226.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,487 C→A 15.7% Q9K (CAG→AAG)  ttdA → L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4870CA15.7% 210.3 / 6.7 92Q9K (CAG→AAG) ttdAL‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (28/48);  new base A (11/5);  total (39/53)
Fisher's exact test for biased strand distribution p-value = 2.60e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

CATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCC  >  NC_000913/3206254‑3206725
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
cATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGA‑GAATTTTTTCAGCGCAAAACAAAAACATGGGTTTCCCTGATGAGCGACAGTAAAAAACAACAAGcc                                                                                                                                                                                                                                                 >  1:1296097/1‑238 (MQ=255)
 aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGGGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                                                                                                                                                                                 <  1:65630/238‑1 (MQ=255)
 aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                                                                                   <  1:1259295/236‑1 (MQ=255)
 aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                                                                                                                                                                                 <  2:310669/238‑1 (MQ=255)
 aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                                                                                                                                                                                 <  1:234483/238‑1 (MQ=255)
     ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGAAAAATAAAAAAAATGGAGTTGCCATGATGGGCGAAAATAATAAGCAACAAGAAATGaa                                                                                                                                                                                                                                            >  1:853033/1‑239 (MQ=255)
     ttAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGG‑TGATTTTTCACGACAAATACAAAAAAAAGAGGTTACGTAGTGGGCGGAAGGAATAAGAAACATGCAGTGaa                                                                                                                                                                                                                                            >  1:51345/1‑239 (MQ=255)
     ttAATTATCCGCAGTCGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTTAAACAAAAACAAAAAAAGGAGTTGCCATGATGAGCGAAAAGAAAAAAAAACAAGCAgggga                                                                                                                                                                                                                                            >  2:1218887/1‑235 (MQ=255)
      tAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGaa                                                                                                                                                                                                                                            <  1:1218887/238‑1 (MQ=255)
                   ttGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGc                                                                                                                                                                                                                                                  <  1:1106259/219‑1 (MQ=255)
                    tgtgATAAGCGCAGTGTATTTCGCAAAACATTTCCATTCCCTGCTCTGGCGTAATATTCATTCTTATTTTCGCGTTGACTCACGAACTGTTAATTACATATTCACGGTGGCAAAATATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAgaga                                                                                                                                                                                                                            <  2:195591/238‑1 (MQ=255)
                      tgATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAATACAAAAAAAGGAGTTGCCATAGTTGGCGAAAGAAATAAACAAAAGACAATGAAT‑AAATTA‑ACAGAGATTg                                                                                                                                                                                                                         >  2:1499789/1‑239 (MQ=255)
                          aaGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                                                                                   <  1:1255694/211‑1 (MQ=255)
                                  tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAATAAAAAAAATGGAGGTGCCCTGGTGAGGGGAAGTAATAAAAAACAAGCAGTGAAT‑AAAGTG‑TAAAAGATTGTCGCT‑AAAttt                                                                                                                                                                                                             >  1:1231640/1‑238 (MQ=255)
                                  tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAAACAAAAAAAAAAAATGGAGTTTCCATGATGGGGGGAAGTAATAAGAAACAAGCAGTGAAA‑AAAATG‑ACAGAGATTGTTGCT‑TACttt                                                                                                                                                                                                             >  1:267806/1‑238 (MQ=255)
                                         cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GGATTTTTTTAGACAAATACAAAAACCGGAGTCGCCATACTTGGCGGAAGTAATAAAAACCAAGCAGAGGAT‑AAAATG‑TAAGACATTATCCCC‑AACATT‑TCCGCCaa                                                                                                                                                                                                    >  1:1450575/1‑238 (MQ=255)
                                              aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGCTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑CAATTTTTTTAGACAGAAACACAAACTACAGGTGTCCTGATGAATGAAAGAAATAAGAAACAAGCAGTGAAT‑AAGTTG‑ATAGAGGTTATTGAC‑GACTTT‑TCCGTCATGAttt                                                                                                                                                                                               >  1:1495060/1‑239 (MQ=255)
                                              aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GGATTTTTTCATACAAATACAAAAAAAGGGGTTTCCATTGTGAGGGAAAGAAAAAAAAAAAAGGAACAGAAT‑AAGATG‑ACATAGATTTTCGCT‑AACTTT‑ACCCCCCTGGttt                                                                                                                                                                                               >  2:1435656/1‑239 (MQ=255)
                                                   tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACCAATACAAAAAATTGAGTTGCCATGATGAGCGAAAGTAATAAACAACAGGGCGGGAAT‑AAGATT‑ACAGAGATTGTTGGT‑CAATTT‑TACGCCATGCttttttc                                                                                                                                                                                           >  1:732931/1‑234 (MQ=255)
                                                          cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCCGACAAAAACAAAAAATTGAGGTGTCATGATGAGCGGAAATAATAAGCAAAAAGCAGTGAAT‑AAGTTG‑AAAGGGATTGTCGCT‑AAATTT‑ACCCACATGATTTTTA‑CCCGAATg                                                                                                                                                                                   >  1:871984/1‑238 (MQ=255)
                                                             ttcttgggCGAAATATTCACTTTTATTTTAGAGTTGATACACGAACTGTAAATTACATATCCGCGGTGAAAAAAAATATAAAACGACATTTTAAGTGGTAGTTTGTGGGGGT‑GATTTTTTCCAGACAAATAAAAAAACTGAATTTGCCATGATGAGCAAAAGAAATAACCAACAGGCATTGAAT‑AAGTTG‑ACAGAGATTGGCGCT‑ATCTTG‑ACCGCCATGATTTCTA‑CCCGAATGCCtg                                                                                                                                                                               <  2:55924/233‑1 (MQ=255)
                                                                tctGGCGCAATATTCATTCTTATTTTCGCTTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑ATTTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCtgatg                                                                                                                                                                            <  1:734121/239‑1 (MQ=255)
                                                                    gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GGATTTTTTCAGACAAAAAAAAAAAATGGGGTTGCCATGATGAGCGAAAGTAATAAACAACAAGCAGTGAAA‑AAATTG‑AACGAGATTGTCGCG‑TACATT‑TCCCCCATTATTTTTA‑CCCCAAAGACTCATTACgt                                                                                                                                                                        >  1:59752/1‑239 (MQ=255)
                                                                     cgcAATATTAATTTTTATTTCAGCGTTGATTCACAAACTGTAAATTACATATTCAGGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACgt                                                                                                                                                                        <  2:187344/238‑1 (MQ=255)
                                                                      gaaaaattcatttTTTTTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GATTTTTTCAAGACAAATACAAAAACTGGAGTTGCTATGATGAGCGAAAGTAATAAGCAACAGCCAGTAATT‑AAGTTG‑ACAGAGATTGTCGCT‑ACCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACgtg                                                                                                                                                                       <  1:1111782/233‑1 (MQ=255)
                                                                      gaaaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCAAGACAAAAACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACgtg                                                                                                                                                                       <  1:1499789/236‑1 (MQ=255)
                                                                          tatTCATTTTTTTTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATAAAAACCCACATTTTTAGTGGTATTTTGTGGCGGT‑AAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCAATGATGAGCGAAATTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATGGTCGTT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  2:1225370/239‑1 (MQ=255)
                                                                          tatTCATTTTTATTTTCGCTTTGATTCACGAATTTTTAATTACATATTCAGGGTGGAAAAAAATATAAAACCAAATTTTTAGTGGTGGTTTGTGGCGGT‑GAATTTTTCCAAAAAAATAAAAAAACGGGGGTTGCCATGATGAGCAAAAGTAATAAGCAACGGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AATTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  2:1231640/239‑1 (MQ=255)
                                                                          tatTCATTTTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGGGGAAAAAAATATAAAACCCCATTTTTAGTGGTAGTTTGTGGCGGT‑AAATTTTCCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCATTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  1:1435656/239‑1 (MQ=255)
                                                                          tatTCATTCTTATTTGCGCGTTGATTCACAAACTGTTAATTAAATATTCACGGGGGCAAAAAATATAAACCCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAAAACAAAAACTGGAGTTGCCATGATAAGCGAAAGTAATAAGCAACGGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  1:1285598/239‑1 (MQ=255)
                                                                          tatTCATTCTTAATTTCTCTGTAATCCACGAATTGTTAATTACAGATTCACGGTGGCAAAAAATATAAAACCACATTTTTGTGGGTAGTTTGTGGGGGT‑GAATTTTTCCAAACAAATACAAAAACTGGTGTTGCAATGGTGAGCGAAAATAATAAGCACCAGGCAGTGAAT‑AAGTTG‑ACATTGATTGACGCT‑AATTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  2:1495060/239‑1 (MQ=255)
                                                                                   ttATTTTCGCGTTGATTCACGAATTGTTAATTACATATTAACGGAGGCAAAAAAAATAAAACCACATTTGTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAAGTGGAGTTGCCATGATGAGAAAAAAAAATAAGCAACAGGCAGTAAAG‑AAGTTG‑ACAGAGATTGTCGCT‑ATCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTaaa                                                                                                                                                         <  1:869/239‑1 (MQ=255)
                                                                                    tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAAAACAAAAAATGGAGGTGGCATGGTGAGCGAAAGTAAAAAAAAACAAGCAAGGAAT‑AAAATG‑ACAGAGATTGTTGCT‑AAATTT‑ACCCCCATGATTTTTA‑TCCCAAAGGCTGATGACGGGGGGGGtaaaataaaa                                                                                                                                                        >  1:208935/1‑239 (MQ=255)
                                                                                    tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGAAAAATACAAAAAATGGGGTTTCCATGATGAGCGAAAGAAAAAAACAAAAAGCAGAGAAA‑AAAATG‑AAAGAAATTGTTGCT‑AAACTT‑TCCGCCCTGATTTTTA‑CCCCAAATCCTGATGAAGcggtggggaaaaaaaaa                                                                                                                                                        >  1:87149/1‑228 (MQ=255)
                                                                                          cgcgTTGATTCACGAACTGTTAATTACATATTCGCGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑AAATTTTTCCAGAAAAATACAAAAACTGGATTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa                                                                                                                                                  <  2:445209/239‑1 (MQ=255)
                                                                                           gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAATAAAAAAAATGGAGTTGGCATGATTAGCGGAAGAAATAAACAACAAGGAGAGAAT‑AAAATG‑AGAGAGAGTGTTGCT‑AAATTT‑ACCCCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGGGGATAAAATAAAACAGCtca                                                                                                                                                 >  1:567210/1‑237 (MQ=255)
                                                                                            cgTTGATTATCAATCTGTTAATTGCTTCATAAGGGAGGAAAAAAATATAAAACCACATTTTTATTGTTAGTTGTTGGCGGT‑TAATTTTACTAAACAAATCAAAAAATTGGATTGGCCAGGATGACAGAAAGAAACAGGAAAAAGGCCGTAAAT‑AAGTTG‑CCAGAGATTGTCGCT‑ATTTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaaa                                                                                                                                                <  1:1181395/239‑1 (MQ=255)
                                                                                                      cGAACTGTTAATTAAATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTGGTGGCGGT‑GAATTTTTCCAGACAAATAAAAAAACTGGAGTTGCAATGATGAGCAAAAGAAATAAGCAACAGGTAGTGAAT‑AAGTTG‑AAAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaa                                                                                                                                      <  1:894167/239‑1 (MQ=255)
                                                                                                       gaccttttAATTACATTTTCACGGTGGAAAAAAATATAAACCCACATTTTTAGGGGTAGTTTGGGGCGGT‑GAATTTTTCCAGACAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAAAAAGCAACAGGCAGTGAAT‑‑AGTTGAACAGAGATGGTCGCT‑ACCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGaaa                                                                                                                                     <  1:31673/233‑1 (MQ=255)
                                                                                                           tGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAAATTTTTCAAACAAAAAAAAAAAATGGGGGTGTCATGATGAGGGGAAAAAATAAACAAAAGGAAGTGAAT‑AAGTTG‑AAAGAGAATGTCGCTAAAATTT‑ACC‑CCATGATTTTTA‑CCCGAAAACCTGCTGACGTGGTGGATAAAAAAAAAAAGCTAAAAGATGCCGacaacg                                                                                                                                  >  1:425549/1‑233 (MQ=255)
                                                                                                             ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAAATTTTTCACACAAAAACAAAAAAAGGAGTTGCCCTCATGAGGGGAAAAAAAAAAAAAAAAGCAGCGAAA‑AAGTTG‑AAAGAGATTGTGGCT‑AACTTT‑ATACCCATGATTTTTT‑ACCCAATGCCTGTTGTAGGGGTGGGGAAACCAAAAAAGATTAAAGAAGGCGaaaattgg                                                                                                                                >  2:819420/1‑233 (MQ=255)
                                                                                                             ttAATTACATATTCACGGTGGAAAAAAATATAAAACCCCATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGAAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AATTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                  <  1:425536/204‑1 (MQ=255)
                                                                                                                     atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GGATTTTTTCAGACAAAAAAAAAAACTGGAGGTGTCTTGATGAGGGGAAGTAAAAAACAAAAGGGAGAGAAT‑AAGTTG‑ACAGAGATTTTCGCT‑AACTTT‑ACCGCCCTGATTTCTT‑CCCGCATGCCTGATGACGTGGTGGATAAACTAAAACAACTAAAGAATGCCGAAACGACGTC‑GGAgggg                                                                                                                      >  2:91766/1‑239 (MQ=255)
                                                                                                                      tatgccgggTGGCAAAAAAGAAAAAACCACATTTTAAGGTGTTGTTGGTGGCGTG‑TAATTTTTCCAGACAAACACAAAAACTGGAGTTGCCATGATGAGGTAAAGAAAAAAGCAACAGGCAGTTAAA‑AGTTTG‑ACAGAGTTTGTGGCT‑ATCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGa                                                                                                                     <  2:903177/232‑1 (MQ=255)
                                                                                                                      tatTCGCGGTGAAAAAAAATAAAAAACCAAATTTTAAGTGGTAGTTTGTGGCGGT‑GAATTTTCCAAGACAAAAAAAAAAACGGGAGTTGCCTGGATGAGCGAAAGTAATAAGCAAACGGCAGTGAAT‑AATTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGa                                                                                                                     <  2:687815/239‑1 (MQ=255)
                                                                                                                      tatTCACGGGGGCAAAAAATATAAAACAACATTTTAAGGGGTAGTTTGTGGGGGT‑GAATTTTCCCAGACAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTA‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGa                                                                                                                     <  1:323688/239‑1 (MQ=255)
                                                                                                                      tatCCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGT‑AAATTTTCCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGa                                                                                                                     <  1:813275/239‑1 (MQ=255)
                                                                                                                              tgggaaaaaaaaaTAAAACCACTTTTTTAGTGGTAGTTTGGGGGGGG‑GAATTTTTACAGACAAATACAAAAACTGGAGGTGCCATGATGAGGGAAAGTAATAAGCAACAGGCATTAAAT‑AAGTTG‑ACAGAGATTTCCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTAt                                                                                                              <  2:853033/233‑1 (MQ=255)
                                                                                                                              tgggaaaaaaaTAAAAAACCCAATTTTAAGTGTGAGTTTGTGGGTGT‑AAATTTTCCCAGACAAATAAAAAACCGGGAGTTCCCTGGAGGAGGGAAATTAATAAGCAAAAGACATTAAAG‑AAGTGG‑ACAGAGATTGTCGCT‑ATCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTAt                                                                                                              <  2:513031/233‑1 (MQ=255)
                                                                                                                              ggggaaaaaaaTATAAAACCACATTTTTGGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGAAAAATACAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTGG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTAt                                                                                                              <  2:267806/233‑1 (MQ=255)
                                                                                                                              gTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGGGTTGCCATGATGAGCGGAAGTAATAAAAAACAAGCAGAGAAT‑AAATTG‑ACAGAGATTGTCGCT‑AACTTT‑TCCGCCATGATTTTTA‑CCCCAAAGCCCGATGACGGGGGGGGTAAAATAAAACAGCTAAAAGATGTCGCAAAGTCGCC‑GGGGGGGGAAATTa                                                                                                               >  1:513765/1‑237 (MQ=255)
                                                                                                                              gTGGAAAAAAAAAAAAAACCACATTTTTAGTGGTAGTTTGTGGGGGT‑GAATTTTTCCAGACAAATACAAAAACGGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AATTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTAt                                                                                                              <  1:1389957/238‑1 (MQ=255)
                                                                                                                               tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCCGACAAAAACAAAAACTGGAGTTTCCATGATGAGCGAAAGTAAAAAACAACAGGCAAAGAATAAAGTTG‑‑CAGAGATTGTCGCT‑AAATTT‑ACCGCCATGATTTTTT‑CCCCAATGCCCGATGAAGTTGGGGGTAAAATAAAAAAACTAAAAGGTGCCGAAAACGCGTC‑GGTGGGGGAAAATATCt                                                                                                            >  2:224749/1‑239 (MQ=255)
                                                                                                                               tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAAACAAAAAAAAAAAATGGAGGTGTCATGATGAGCGGAAATAATAAACAAAAAGCAAGGAAT‑AAAATG‑ACAGAGATTGTTGCT‑AACTTT‑ACCGCCATGATTTTTACCCCCAATG‑CTTATGGCGGGGGGGGTAAAACAAAACAGCTAAAAGGAGCCGAAAAGGCCTCGGAGGGGGAAAAtatat                                                                                                             >  2:628479/1‑235 (MQ=255)
                                                                                                                                agaaaaaaaTATAAACCCACATTTTTAGTGGTAGTTTGGGGCGGT‑AAATTTTTCAAAACAAAAACAAAAACTGGAGTTGCCATGATGAGGAAAAGTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGTT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTa                                                                                                           <  2:348892/236‑1 (MQ=255)
                                                                                                                                 gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAAATTTTTCAAACAAATAAAAAAAATGGAGTTGGCATGATTAGCGAAAGGAATAAAAAAAAGGCAGGGAAT‑AAATTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCCTGATTTTTA‑CCCCAAAACCTGATGAAGTGGGGGGTAAAATAAAACAACTAAAAGAAGCCCAAAACTCGTC‑GGTGGGGGAAAATATTTa                                                                                                           >  1:405616/1‑238 (MQ=255)
                                                                                                                                  cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGAGGTGGCATGATGAGCGGAAGTAAAAAACAAAAAGCAGAGAAT‑AAAATG‑ACAAAGATTGTCGGC‑AACTTT‑TACACCCTGATTTTTT‑CCCCGATGGCTCATGAAGTGGGGGGTAAAATAAAAAAACGAAAAGAGACCGAAAAGTCGCC‑GGTGGGGGAAATTATATAcc                                                                                                         >  2:1389957/1‑239 (MQ=255)
                                                                                                                                     aaaaTATAAACCCAAATTTTAAGTGGTAGTTTGGGGCGGT‑AAATTTTCCCAAAAAAATAAAAAAACTGGATTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATa                                                                                                      <  1:303345/239‑1 (MQ=255)
                                                                                                                                       aaTATAAACCCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATAAAAAAACTGGAGTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACg                                                                                                    <  1:856817/239‑1 (MQ=255)
                                                                                                                                       aaTAAAAAACCACAGTTATAGTGGTAGTTTGTGGCGGT‑AAATTTGCCAAGAAAAAAACAAAAACGGGAGTTGCAATGATGAGCAAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCTCA‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACg                                                                                                    <  2:732931/239‑1 (MQ=255)
                                                                                                                                          ataAACCCAAATTTTGAGGGGTATTGTGTGGGGGT‑GAATTTTGCCAAAAAAATACAAAAACTGGATTTGCTATAAGGAGCGAAAGTAAAAAACAACAGGCAGTGAAA‑AAGTTG‑ACAGAGATTGTCGAT‑ACCTTA‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATg                                                                                                 <  2:1296097/239‑1 (MQ=255)
                                                                                                                                           taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCC‑GACAAAAAAAAAAAATGGAGTTGGCATGTTGGGGGGAAAAAATAAACAAAAAGCAGTGGAT‑AAAATT‑AAAGAAAATGTTGCT‑AAATTTAACCCCCAT‑ATTTTTA‑CCCCAATGCCCGATGACGGGGGGGGGAAAAAAAAAAAGCTAAAAGATGGCGGAACATCGGC‑GGTGGGGGAAAATATATAACATAcaaagt                                                                                                >  2:837292/1‑234 (MQ=255)
                                                                                                                                                   caTTTTTAGTGGTAGTTTGTGGCGGT‑GGATTTTTTCAGACAAAAACAAAAAATGGGGTTGCCATGATGAGGGAAAGAAATAAGCAACAGGCAGTGAAA‑AAATTG‑AAAGAGATTGTCTCT‑AACTTT‑ACCGCCCTGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGGTAAAATAAAAAAGCTAAAGGATGCCGAAAAGTCGTC‑GGTGGGGAAAATTATATAACATCAGATTTTCGacaac                                                                                        >  1:1188013/1‑239 (MQ=255)
                                                                                                                                                            tgggattttGTGGGGGT‑GAATTTTTCCAGAAAAATAAAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCaaaa                                                                                <  2:712410/232‑1 (MQ=255)
                                                                                                                                                                ggttggggggggT‑AAATTTTACAAAAAAAATAAAAAACCTGGAGTTGCAATGATGAGCGAAATAAATAAGCACAAGGCAGTAAAT‑AAGTTG‑ACAGAGTTTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  2:425549/229‑1 (MQ=255)
                                                                                                                                                                aGTGTGTGGTGGT‑GAATTTTTCCAAAAAAATACAAAAACTGGAGTTGCTATGATGAGCGAAAGTAATAAGCAACGGGAAGGTAAT‑AAGTTG‑AAATAGATTGTCGTT‑CACTTT‑TCCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  1:779026/239‑1 (MQ=255)
                                                                                                                                                                      gtgcatgtaaaTTTTACCAAACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTATAAAGCAACAGGCAGTAAAT‑AAGTTG‑AGAAAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                      <  1:382967/230‑1 (MQ=255)
                                                                                                                                                                                   ttccaaGAAAAATACAAAAATTGAAGTTGCAATGAGGGGAGAAAGAAAAAACCAACAGGCAGTGAAT‑AATTTG‑ACAGAGATTGTCCAT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                                                         <  1:579119/234‑1 (MQ=255)
                                                                                                                                                                                         gACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTc                                                   >  2:679607/1‑239 (MQ=255)
                                                                                                                                                                                          aaaaaaaaaaaaaCTGGAGTTGCAATGATGAGCAAAAGTAAAAAGCAAAAGGAAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcc                                                           <  2:1222728/222‑1 (MQ=255)
                                                                                                                                                                                                  aaaaaaTGGAGTTGCCATGATGAGCTAAAGTAATAAGCAACAGGAGGTGAAT‑AAGTTG‑ACAGATATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCg                                          <  2:82481/239‑1 (MQ=255)
                                                                                                                                                                                                    aaaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAg                                                 >  1:1222728/1‑230 (MQ=255)
                                                                                                                                                                                                    aaaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                                        >  1:819506/1‑239 (MQ=255)
                                                                                                                                                                                                    aaaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                                        >  1:951176/1‑239 (MQ=255)
                                                                                                                                                                                                     aaCTGGAGTTGCCATGATGAGCGAAAGTAATAAGAAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGAT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  1:1465131/239‑1 (MQ=255)
                                                                                                                                                                                                     aaCTGGAGTTGCCAGGAGGAGCGAAAGAAAAAAGCAACAGGCAGTGAAT‑AAGTTG‑AAAGAGATGGCCGCT‑AACTTA‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  1:454149/239‑1 (MQ=255)
                                                                                                                                                                                                     aaCGGGAGTTGCAATGAGAAGGAAAAGTAATAAGCAACAGGCAGGGAAT‑AAGTTA‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  2:513765/239‑1 (MQ=255)
                                                                                                                                                                                                      aCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCGTACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGga                                      >  1:347329/1‑239 (MQ=255)
                                                                                                                                                                                                      aCTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGga                                      >  1:1512087/1‑239 (MQ=255)
                                                                                                                                                                                                               gCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGt                              >  1:1294000/1‑238 (MQ=255)
                                                                                                                                                                                                               gCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGt                              >  2:1114524/1‑238 (MQ=255)
                                                                                                                                                                                                               gCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGTT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGtt                             <  1:463405/239‑1 (MQ=255)
                                                                                                                                                                                                                         acaaaaGTAAAAAGCAACAGGCAGTAAAT‑AAGTTG‑AAAGAGATTGTCTCT‑AATTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTaaa                   <  1:819420/236‑1 (MQ=255)
                                                                                                                                                                                                                          cGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                  >  1:175359/1‑239 (MQ=255)
                                                                                                                                                                                                                          cGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                  >  1:574027/1‑239 (MQ=255)
                                                                                                                                                                                                                          cGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                  >  1:961929/1‑239 (MQ=255)
                                                                                                                                                                                                                           aaaaGTAAAAAGAAACAGGCAGTGAAT‑AAGTTG‑AAGGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTaaa                   <  2:405616/236‑1 (MQ=255)
                                                                                                                                                                                                                              aGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCgg              >  1:958413/1‑239 (MQ=255)
                                                                                                                                                                                                                                    aaGCAACAGGCAGGAAAA‑AAGTTG‑AAAGATATTGCCGCT‑AAATTC‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCg        <  2:306282/239‑1 (MQ=255)
                                                                                                                                                                                                                                        aaCAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑CCCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCt      <  1:91766/237‑1 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                                                         >  2:1010147/1‑184 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGCGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  1:303793/1‑239 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAtt                                  >  2:264252/1‑207 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  2:1367610/1‑239 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  2:172669/1‑239 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  2:918417/1‑239 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc   >  2:1097579/1‑238 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATACCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGCGGAGATTATGTTCTTCGTTACAGTCGGTTCCCGCTTccc  >  1:1526525/1‑239 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AGCTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                                                         <  1:1010147/184‑1 (MQ=255)
                                                                                                                                                                                                                                          cAGGCAGTAAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAtt                                  <  1:264252/207‑1 (MQ=255)
                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    
CATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGT‑GAATTTTTCCAGACAAATACAAAAACTGGAGTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTGAAT‑AAGTTG‑ACAGAGATTGTCGCT‑AACTTT‑ACCGCCATGATTTCTA‑CCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTC‑GATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCC  >  NC_000913/3206254‑3206725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A