Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 83 124.0 2465218 96.8% 2386331 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,487 C→A 15.7% Q9K (CAG→AAG)  ttdA → L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4870CA15.7% 225.3 / 7.8 109Q9K (CAG→AAG) ttdAL‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (25/63);  new base A (12/6);  total (37/72)
Fisher's exact test for biased strand distribution p-value = 5.24e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 117 total aligned reads displayed.

TTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCC  >  NC_000913/3206249‑3206725
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                               
ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAAc                                                                                                                                                                                                                                                 <  1:1068312/239‑1 (MQ=255)
      aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAgg                                                                                                                                                                                                                                              <  1:275370/236‑1 (MQ=255)
      aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGc                                                                                                                                                                                                                                             <  1:218379/237‑1 (MQ=255)
      aTCGTTAATTATCCGCACGTGTGATAAGCGAAGTGTATTTCGCAAAACATAGCCATTCCCTGTTCTGGCGCAATATTCATTCTTATTTTCGCGTTGAGTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAGTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGc                                                                                                                                                                                                                                             <  2:990895/237‑1 (MQ=255)
       tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAATACAAAAACT‑TGAGTTTCCACGATG‑AGCGGAAGAAATAAAAAACAGGCAGt                                                                                                                                                                                                                                          >  1:1000215/1‑239 (MQ=255)
        cGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAACACAAAAAAG‑TGAGATGGCATGATT‑AGGGAAAGGAAAAAAAAAAAGGcggca                                                                                                                                                                                                                                         >  1:530927/1‑235 (MQ=255)
             aTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATaa                                                                                                                                                                                                                                    <  1:1012099/239‑1 (MQ=255)
             aTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATaa                                                                                                                                                                                                                                    <  1:466571/239‑1 (MQ=255)
                 tCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAg                                                                                                                                                                                                                                   <  1:778721/236‑1 (MQ=255)
                   cGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAATAAAAAAACA‑TGAGGTGCCATTATGAAGCG‑AAGAAATAAACCAAAGGCAATGAAAAAATTGaa                                                                                                                                                                                                                              >  1:877394/1‑238 (MQ=255)
                               aaGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGc                                                                                                                                                                                                                  <  1:463801/239‑1 (MQ=255)
                                aGCGCAGTTTATTTCGCAAAACATTGCAATTCACTGCTCTGTCGCAATATTCATTCTTATTTTCGCGTTTATTCACGAACTGTTAATTACATATTCCCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGTTAAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                 <  2:530927/239‑1 (MQ=255)
                                aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑TTACCAAAAAAAAAAAT‑GGAGGTGCCCTTGTG‑GGCGAAAAAAATAAACAACAAGGAGAGAAAAAGTTGACAGAGAGTGTTGCt                                                                                                                                                                                                                 >  1:803893/1‑239 (MQ=255)
                                aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                 <  1:763793/239‑1 (MQ=255)
                                aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                 <  2:1055200/239‑1 (MQ=255)
                                aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                                 <  2:364770/239‑1 (MQ=255)
                                  cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AAAACACAACAAAAAAT‑GGAGTTGGCATGATG‑AGCGAAAATAATAAAGAACAAACAAAGAAAAAATTGAAAAAGAATGTCGGTaa                                                                                                                                                                                                               >  2:763793/1‑239 (MQ=255)
                                       tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAAATTTTTA‑AAACAAAAAAAAAAAAT‑GGAGTTTGCATTGAG‑GGAGGAATGAATAAGCAAAAAAAAGGGAAAAAGATGACAGCAAATGTCACTAACtttt                                                                                                                                                                                                          >  2:660806/1‑238 (MQ=255)
                                            ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAAAAAAAAACA‑GGAGTTTCCATGTTG‑GGCGAAAGTAATAAACAACACGCAGGGAATAAAATGACAGAGATTGTCGCTAACTTT‑Acatcc                                                                                                                                                                                                    >  1:1158443/1‑235 (MQ=255)
                                              cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑CGACAAATACAAAAAAT‑GGGGTTGGCATTGTT‑GGGGAAAGGAATAAAAAACAAGCAGGGGATAAGTTTTCAGAGAATTTCGCCAAATTT‑TCccccca                                                                                                                                                                                                  >  1:834286/1‑237 (MQ=255)
                                                 aaaaCATTGCGCTCCCCTTCTGGTGCAAAAAATTTATTCTTATTTTCGCGTGGATTCACAAACTTTAAATGAAATATTCACGGGGGAAAAAAATATAAAACCACATTTTTGGGGGTGTGTGGGGGCGGGAAATTTTTCC‑AAAAAAATAAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAAAAAGCAACAGGAGGTGAATAAGTTGACAGAGATTGTCGCTAAATTC‑ACCGCCATGAt                                                                                                                                                                                               <  2:785710/239‑1 (MQ=255)
                                                 aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAATACAAAAACT‑GGGGTTGCCATGATG‑AGGGAAAGTAATAAGAAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                               >  1:618666/1‑239 (MQ=255)
                                                   aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAAAAAAAAAAAA‑GGGGGTGCCATGATG‑AGGGAAAGAAATAAAAAAAAAGGAGTGAATAAGTTGACAGAGATTTTTGCTAAATTT‑ACCGCCATGAttt                                                                                                                                                                                             >  1:190459/1‑239 (MQ=255)
                                                     cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAAAAAAAAAAT‑TGAGTTGCCATGATG‑AGGGAAAGTAATAAACAACAGGGAGTGAATAAATTGACAGAGATTGTTGCTAACTTT‑ACCGCCCTTAttttt                                                                                                                                                                                           >  1:847286/1‑237 (MQ=255)
                                                           cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTACGCTTTGATTCACAAACTGTTAATTACATATTCACGGGGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGAAAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAATAAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGa                                                                                                                                                                                     <  2:422381/239‑1 (MQ=255)
                                                            aTTCCCTGCTCTGGCGCAATATTAATTCTTATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTGGCCATGATG‑AGCGAAAGTAATAAGCAACAGTCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGaa                                                                                                                                                                                    <  2:707159/239‑1 (MQ=255)
                                                             ttCCCTGCTCTGGCGCAATATTCTTTTTTATTTTCGTGTAGATTCACGAACTTTTAATTAAATATCCGCGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAATTTTTTCA‑AGACAAATACAAAAACT‑GGAGTGGCCAGGATG‑AGCAAAAGTAATAAGAAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAAt                                                                                                                                                                                   <  2:834286/239‑1 (MQ=255)
                                                              tCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAGAAATTTTTC‑AAAAACAAACAAAAAAT‑GGAGTTTCGAAGAAG‑AGCGAAAATAATAAACAACAAGCAGTGAATAAATTTACAGAGATTTTCACTAAATTT‑ACAACCATGATTTCtcacacaat                                                                                                                                                                                   >  2:1136401/1‑230 (MQ=255)
                                                               cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAATACAAAAACT‑GGAGGTGTCATGATG‑GGAGAAAGGAATAAACAAAAAGCAGTGAATAAAGTGAAAGAGATTGTTGCTAAATTT‑TACGCCATGATTTTTTCCCCAATg                                                                                                                                                                                  >  1:422381/1‑238 (MQ=255)
                                                                    ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAAAACAAAAACT‑TGAGTTGCCATGATG‑AGGGAAAGGAATAAGAAACAGACAGTGAATAAGTTGACACAGATTGTCGCTAAATTT‑TCCCCCCAGATTTCTACCCCAATGCCtgat                                                                                                                                                                            >  1:1089593/1‑239 (MQ=255)
                                                                    ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAAACAAAAAAT‑GGAGGTGCCCTGATG‑AGCGAAAGTAATAAACAAAAAGCAATGAATAAATTGAAAGAGATTGTTGCTAACTTT‑ACCCCCATGAATTTTACCCCGAAGCCtgat                                                                                                                                                                            >  1:994363/1‑239 (MQ=255)
                                                                         gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAAACAAAAAAT‑GGAGTTGCCATGATG‑AGCGGAAGTAATAAACAAAAAGCAGTGAATAAATTTACAAAGATTGTTGCTAACATT‑ACCGCCATGATTTTTACCCGAATGCCTGGTGACgt                                                                                                                                                                       >  1:374205/1‑239 (MQ=255)
                                                                              atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAATACAAAAAAT‑GGAGTTGCCATGATG‑AGCGGAAGTAATAAACAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ATCGCCATGATTTCTACCCGAATGCCTGATGACGtggggg                                                                                                                                                                  >  1:553213/1‑239 (MQ=255)
                                                                               ttttaatttTTATTATCGGTTTGATTCACAAACTGTTAATTACATATTCGTGGGGGAAAAAAAAAAAAAACCACATTTTTGGGTGTAGTTTGTGGCGGTGAATTTTCCC‑AGAAAAATAAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                 <  2:1037681/234‑1 (MQ=255)
                                                                               tattatttcTTATTTTGACTTTAATTCACAAACTGTTAATTAAATATTCGGGGGGCAAAAAAAAAAAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAATTTTTTCA‑AAAAAAATAAAAAAACT‑GGAGTTGCCTTGAGG‑AGCGAAATTAAAAAGCAACAGGCAGTGAATAAGTTGACAGATATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                 <  2:526835/233‑1 (MQ=255)
                                                                               aattcattcTTATTTTCGTGTTGATTCACAACGTGTTAATTAAATATTCCCGGGGGAAAAAAAAATAAAACCACATTTTAAGTGGAAGTTTGTGGGGGTGAATTTTCCA‑AGACAAAAAAAAAAACT‑GGAGTGGCCAGGAGG‑AGCAAAAGTAAAAAGCAAAAGCAGGTAAATAATTTAAAAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                 <  2:1225991/238‑1 (MQ=255)
                                                                                       cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATGCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AAACAAATAAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa                                                                                                                                                         <  1:877032/239‑1 (MQ=255)
                                                                                         tATTTTCGGGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAATTTTTCC‑AGACAAATACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                       <  1:1166046/239‑1 (MQ=255)
                                                                                         tATTTTCGCGTTGATTCACGAACTTTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTCCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                       <  1:724782/239‑1 (MQ=255)
                                                                                         tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTA‑AAACAAATACAAAAAAT‑GGAGGTTGCATGGTG‑GGAGAAAGTAAATAGCAACAAGAAGAGAATAAGATGACAGAGATTGTAGCTCAATTT‑AACGCAACGGATTTTAAACGAATGCCTGATATAGCGGTGAGGAAACTaaaa                                                                                                                                                       >  2:686417/1‑239 (MQ=255)
                                                                                         tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGAATATTTTT‑CGAAAAAAAAAAAAAAA‑GTAGGTGTCATGATG‑AGCGGAAATAATAAAAAACAAACAGGGAAAAAAAAGACAGAGAATGTCGCTAAATTT‑TACGACATAATTTTTACCCCAATGCCTGAGTACGAGGGGGGGAAACTaaaa                                                                                                                                                       >  2:697045/1‑239 (MQ=255)
                                                                                         tATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTATTTGGTGGCGGTGAATTTTTCC‑AGACAAATAAAAAAACG‑GGAGTTGCAAGGATG‑AGCGAAAGTAATAAGCAACAGGCAGAGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                       <  1:980562/239‑1 (MQ=255)
                                                                                         tATTTTCGCGTTAATTCACGAATTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATAAAAAAACT‑GGAGTTGCCATGATG‑AGTGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGGGATTTTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                       <  1:901204/239‑1 (MQ=255)
                                                                                                gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑ATACAAAAAAAAAAACT‑TGAGTTGCCCTGATG‑AGCGAAAGTAATAAACAACAAGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTTTAACCCAATGCCTGATTACGTGGGGGGTAAACTACAACAACTaa                                                                                                                                                >  1:459662/1‑239 (MQ=255)
                                                                                                                  ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAATTTTTCC‑AGACAAATAAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcgt                                                                                                                              <  1:1046637/239‑1 (MQ=255)
                                                                                                                  ttAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATAAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                               <  1:420869/174‑1 (MQ=255)
                                                                                                                      ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGAt                                                                                                                          <  1:972372/239‑1 (MQ=255)
                                                                                                                          atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTT‑AAACAAAAACAAAAAAT‑TGAGTTTCCCTGATT‑AGCGAAAGTAATAAACAACAAGCAATGAATAAAATGAAAGAGAATGTTGCCAACTTT‑ACCCCCCACATTTTTTACCCCATGCCTGATGACGTGGTGGGTAAACTAAAAAAAACAAAAGATGCCCGAACGCCGTCGGTgggg                                                                                                                      >  2:9497/1‑239 (MQ=255)
                                                                                                                           ttttaagggTGGAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGTGGAGGTGAATTTTTCA‑AGAAAAAAAAAAAAACG‑GGAGTTGCAATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAGGTTGACAGAGATTGTGGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                     <  2:618666/232‑1 (MQ=255)
                                                                                                                           tatTCCCGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                     <  1:593341/239‑1 (MQ=255)
                                                                                                                           tatTCAGGGTGGAAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGAAAAATACAAAACCT‑GGAGTTGCCATGATG‑AGCAAAAGAAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                     <  1:559706/239‑1 (MQ=255)
                                                                                                                           tatTCACGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGAAAAATAAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                                     <  1:1193615/239‑1 (MQ=255)
                                                                                                                            atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAATACAAAAAATGGGAGTTG‑CATGGTG‑GGCGGAAGGAATAAGCAAAAAGCAGTGAAAAAATTGACAAAGATTGTCGCTAAATTT‑TACGCCCTGAATTCTAACCCAATGCCTTATGACGTGGGGGGTAAAATAAAACAACTAAAAGAAGCCCAAAAGTACTCGATggggga                                                                                                                    >  1:789931/1‑237 (MQ=255)
                                                                                                                              tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAATACAAAAAAA‑GGAGTTGGCATTATT‑GGCGAAAGAAAAAAGCAACAAGCAGTGAATAAATTTACAGAAAATGTCGCTAACTTT‑ACCCCCACGATTTTTACCCGAATGCCTGATGACGTGGTGGGTAAACTAAAACAACCAAAAGATGCCGAAACACCGTCGCTGGGGgaaa                                                                                                                  >  1:1128967/1‑239 (MQ=255)
                                                                                                                              tCACGGGGAAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCC‑TGAAAAAAAAAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTCGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaaa                                                                                                                  <  2:803893/239‑1 (MQ=255)
                                                                                                                                aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTC‑AGACAAAAAAAAAAACT‑TGAGGTGTCCTGGTG‑GGCGAAAGTAAAAAGAAACAGACAGAGAATAAGTTGACAGAGAGTGTCGGTAAATTT‑ACCGCCCTGATTTCTACCCGAATACCTGATTAAGTGGTGGTTAAACTAAAACAACTAAAGAATGACGAAACGTCGTCGGGGGGGgaaaat                                                                                                                >  2:162693/1‑237 (MQ=255)
                                                                                                                                aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTC‑AAAAAAAAAAAAAAAAA‑GGGGGTGGCATGAGG‑AGCGGAAGAAAAAAAAAAAAGAAAGAGAAAAAAATGAAAGAGATTGTTGCTAACTTT‑ACAGCCAGGATTTCTTCCAGAATGACGGGTGAGGGGGGGGGTAAAATAAAAAAACTAAAAGATGCCGAAAAACGGTCGGTGGGGgaaaat                                                                                                                >  2:947587/1‑237 (MQ=255)
                                                                                                                                   gtgaaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAATTTTCCC‑AGACAAATACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGGCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAAtt                                                                                                                <  1:697045/231‑1 (MQ=255)
                                                                                                                                   gTGGCAAAAAATATAAAACCCCATTTTTAGTGTTATTTTGGGGCGGTGAATTTTTCC‑AGCAAAATAAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                              <  1:352262/238‑1 (MQ=255)
                                                                                                                                   gTGGAAAAAAAAATAAAACCACATTTTTAGTGGTAGTTGGTGGCGGTGAATTTTTCA‑AAAAAAATACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGTAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                              <  2:1210753/238‑1 (MQ=255)
                                                                                                                                   gTGGAAAAAAAAAAAAACCCACATTTTAGGTGGGAGTTGGTGGGGGAAAATTTTCAC‑AGACAAATAAAAAAAGT‑GGAGTTGCCATGATG‑AGCAAAATAAATAAGCAACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                              <  2:355353/238‑1 (MQ=255)
                                                                                                                                      gaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTCCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                                 <  1:462259/182‑1 (MQ=255)
                                                                                                                                          aaaaTTTAAACCCACATTTTTTGT‑GTTGTTTGTTGGGGGGAATTTTTCCAAAAAAAATAAAAAAACT‑GGAGTTGCCATGATG‑GTCGAAAGATATAAGCAACAGCCGTTGAAAAAGTAGACAGGTATTGTAGTTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                                      <  2:965279/239‑1 (MQ=255)
                                                                                                                                            aaTATAAAACCAGAGTAATAGTGTTGTTTTTGGGCGATGAATTTTTCC‑AGACAAATACAAAAACG‑GAAGTAGCAATGATG‑ACGAAAAGTAATAGGAAACGGGCAGTCAATAATTTGACGGAGTTTGTGTAAAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                    <  1:48150/239‑1 (MQ=255)
                                                                                                                                            aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                    <  1:162693/239‑1 (MQ=255)
                                                                                                                                            aaTATAAAACCACAGTTTTGTTGGTAGTTTGTGG‑GGTGAAATTTTCCAAGACAAATAAAAAACCT‑GGGGTTGCTATGATG‑AGCGAAAGAAATACGCAACAGGGGGTAAATAAGTTGACAGGGATTGTCTATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                    <  2:1158443/239‑1 (MQ=255)
                                                                                                                                            aaTAAAAACCCAAATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCA‑AAACAAAAACAAAAACT‑GGAGTTGCAATGATG‑AGCGAAAGAAAAAAGAAACAGGCAGTAAATAAGTTAACAGAGTTTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                                    <  2:1223418/239‑1 (MQ=255)
                                                                                                                                                     ccACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTCCC‑AGACAAATACAAAAACG‑GGAGTTGCCATGAGG‑AGCAAAAATAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGac                                                                                           <  1:7546/239‑1 (MQ=255)
                                                                                                                                                                     atttgttgGGGGTGAATTGTTCC‑AGACAATTACAAAAACA‑GGAGTTGCCATAATG‑AGGTAAAGTAATAAGCAACAGGCAGGAAATAAGTTGACAGGTATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  1:452729/233‑1 (MQ=255)
                                                                                                                                                                     aGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAAAAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  1:660806/239‑1 (MQ=255)
                                                                                                                                                                      gTTTGTGGGGGTGAATTTCACG‑AAACAAATACAAAAACT‑GGAGTTGCCAAGATG‑AGCAAAAGAAATAAACAAGGGGCGTTGAAAAAGTGAACAGATATTGTCGATACTTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  2:14921/238‑1 (MQ=255)
                                                                                                                                                                      gTTTGTGGCTGTAAATTTTTCA‑AAAAAAAAAAAAAACCT‑GGAGTGGCCATGAGA‑TGCAAAAGAAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGTTTGTCGTTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                           <  2:1089593/238‑1 (MQ=255)
                                                                                                                                                                          gtgGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                      <  1:1037511/239‑1 (MQ=255)
                                                                                                                                                                           tgGCGTTAAATTTTTCA‑AAAAAAATACAAAAACT‑GGAGTTGCCAAGATG‑AGAGAAAGAAATAAGCAACGGGCAGTGAATAAGTGGAAGGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                      <  2:459662/238‑1 (MQ=255)
                                                                                                                                                                           tgGCGGAAAATTTTGAC‑AGAAAAATACAAAAACT‑GAAGGGGCAATGATG‑AGCGAAAAAAATAAGCAAAAGGCGTTGAATAAGTGGAAAGAAAGTGTCGAAACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGGCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                      <  2:712962/238‑1 (MQ=255)
                                                                                                                                                                           ggggggtaattttttCC‑AACAAAAAACAAAAACG‑GGAGTGGCCATGATG‑GGCGAAAGAAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                                      <  1:389799/228‑1 (MQ=255)
                                                                                                                                                                                     tttttCC‑AGAAAAAAAAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAAAAAGCAACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcc                                                           <  1:376748/239‑1 (MQ=255)
                                                                                                                                                                                       ttccc‑AGACAAATACAAAAACT‑GGAGTGGCCATGATG‑AGCAAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAAATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctg                                                         <  1:1136401/236‑1 (MQ=255)
                                                                                                                                                                                         ttacaaaaaaaaacaaaaacG‑GGGTTTGCCATGGAA‑GGCAAAAGAAAAAAACAAAAGGCAGTGAATAAGTTGAAAGAGATTGGCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgc                                                        <  2:847286/231‑1 (MQ=255)
                                                                                                                                                                                         tCC‑AGAAAAATAAAAAAACT‑GGATTTCCAATGATG‑AGCGAAAGTAAAAAGCAACAGGCAGTAAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcc                                                       <  1:244049/239‑1 (MQ=255)
                                                                                                                                                                                             aGAAAAAAACAAAAATT‑GGAGTTGCCAAGATG‑AGCGAAAGTAAAAAGCAACAGGAAGTGAAAAAGTTGACAGAGATTTGCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTTCCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGt                                                    <  1:817651/239‑1 (MQ=255)
                                                                                                                                                                                                  aaaaaaaaaaCT‑GGAGTTGCCAGGAGG‑GGCAAAAGAAAAAAGAAAGAGGCAGAAAATAAGTTGAAAGAGATTGTCGTAAATTTA‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGa                                               <  2:414315/234‑1 (MQ=255)
                                                                                                                                                                                                     aCAAAAACG‑GGAGTGGCCATTATG‑AGCGAAAGTAAAAAGCACGAGTGAGTGAATAATTTGACAGATATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGacac                                            <  2:1000215/239‑1 (MQ=255)
                                                                                                                                                                                                       aaaaaGT‑GGAGTTTCCATGAGG‑AGAGAAAGTAAAAACCAAAAGTGAGTAAATAAGTTGACAAAGGTTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCg                                          <  2:1150314/239‑1 (MQ=255)
                                                                                                                                                                                                        aaaaCT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgg                                         <  1:9497/239‑1 (MQ=255)
                                                                                                                                                                                                         aaaCT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                                        >  1:850849/1‑239 (MQ=255)
                                                                                                                                                                                                          aaCT‑GGGGTGGCAATGATG‑AGCAAAAGAAAAAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  2:513028/239‑1 (MQ=255)
                                                                                                                                                                                                          aaCT‑GGATTTGCCATAATG‑AGCAAAAGCAAAAAGCAACAGCATTTCAATAAGTTAAAAGAGATTGTCGTTAGTTTT‑ACCGCCATGATTTCTACCCGAATGCCTTATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGTAACGTCGTCGATGGGGAAAATTATCTCCCAGCCGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  1:732324/239‑1 (MQ=255)
                                                                                                                                                                                                           actgggAGTTGCCAGGAAG‑AGCGAAAGTAATAAGCAAAAGGGAGTAAATAAGTGGACAGAGATTGCCCTTATCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                       <  2:553213/235‑1 (MQ=255)
                                                                                                                                                                                                               ggAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAt                                   >  2:1115850/1‑239 (MQ=255)
                                                                                                                                                                                                                 aGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTa                                 >  2:992747/1‑239 (MQ=255)
                                                                                                                                                                                                                          gatg‑aGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCg                        >  2:354023/1‑239 (MQ=255)
                                                                                                                                                                                                                                   aaaGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt                 <  1:411796/238‑1 (MQ=255)
                                                                                                                                                                                                                                   aaaGTAATAACCAAAAGCAAGGAAGTAGGTTG‑CAGGGATTGTTGGTAAATTTCGCCGCCCTGATTTCTACCCGAAGGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTCCCATACGATGTTCGACAACATGCAAAAAGCGATTGCCCTGAATCGTCCTGCCTTTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg                  <  2:903565/237‑1 (MQ=255)
                                                                                                                                                                                                                                    aaGTAATAAGCAACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt                 <  2:789931/237‑1 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  1:778183/1‑239 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTccc  >  1:740291/1‑239 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc   >  1:1122123/1‑238 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTcc   >  2:1214963/1‑238 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTACTCGTTAAAGTCGGCTCCCGCTTcc   >  2:642957/1‑238 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                               
TTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAATACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCCGCTTCCC  >  NC_000913/3206249‑3206725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A