Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F9 I0 R1 83 124.0 2465218 96.8% 2386331 230.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,206,484 C→A 10.9% Q8K (CAA→AAA)  ttdA → L‑tartrate dehydratase, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4840CA10.9% 255.3 / 3.5 113Q8K (CAA→AAA) ttdAL‑tartrate dehydratase, alpha subunit
Reads supporting (aligned to +/- strand):  ref base C (27/71);  new base A (9/5);  total (37/76)
Fisher's exact test for biased strand distribution p-value = 1.16e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

ATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCC  >  NC_000913/3206248‑3206718
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
aTTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑aa                                                                                                                                                                                                                                           <  1:975910/239‑1 (MQ=255)
aTTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑aa                                                                                                                                                                                                                                           <  1:62281/239‑1 (MQ=255)
 ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AAc                                                                                                                                                                                                                                          <  1:367731/239‑1 (MQ=255)
 ttCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AAc                                                                                                                                                                                                                                          <  1:1068312/239‑1 (MQ=255)
       aTCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGc                                                                                                                                                                                                                                      <  1:218379/237‑1 (MQ=255)
       aTCGTTAATTATCCGCACGTGTGATAAGCGAAGTGTATTTCGCAAAACATAGCCATTCCCTGTTCTGGCGCAATATTCATTCTTATTTTCGCGTTGAGTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACAGTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGc                                                                                                                                                                                                                                      <  2:990895/237‑1 (MQ=255)
        tCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAAT‑ACAAAAACT‑TGAGTTTCCACGATG‑AGCGGAAGAAATAAAA‑AACAGGCAGt                                                                                                                                                                                                                                   >  1:1000215/1‑239 (MQ=255)
              aTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATaa                                                                                                                                                                                                                             <  1:1012099/239‑1 (MQ=255)
              aTTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATaa                                                                                                                                                                                                                             <  1:466571/239‑1 (MQ=255)
                  tCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAg                                                                                                                                                                                                                            <  1:778721/236‑1 (MQ=255)
                    cGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAAT‑AAAAAAACA‑TGAGGTGCCATTATGAAGCG‑AAGAAATAAAC‑CAAAGGCAATGAAAAAATTGaa                                                                                                                                                                                                                       >  1:877394/1‑238 (MQ=255)
                         ttGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑CAACAAATAAAAAAAACT‑GG‑GTTGTCCTTGTG‑GGGGGAAGTAATAAGC‑AACAAGCCGGGAAAAAATTGGCAggga                                                                                                                                                                                                                  >  1:513028/1‑239 (MQ=255)
                                aaGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGc                                                                                                                                                                                                           <  1:463801/239‑1 (MQ=255)
                                 aGCGCAGTTTATTTCGCAAAACATTGCAATTCACTGCTCTGTCGCAATATTCATTCTTATTTTCGCGTTTATTCACGAACTGTTAATTACATATTCCCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGTTAAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                          <  2:530927/239‑1 (MQ=255)
                                 aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑TTACCAAA‑AAAAAAAAT‑GGAGGTGCCCTTGTG‑GGCGAAAAAAATAAAC‑AACAAGGAGAGAAAAAGTTGACAGAGAGTGTTGCt                                                                                                                                                                                                          >  1:803893/1‑239 (MQ=255)
                                 aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                          <  2:1055200/239‑1 (MQ=255)
                                 aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                          <  2:364770/239‑1 (MQ=255)
                                 aGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCt                                                                                                                                                                                                          <  1:763793/239‑1 (MQ=255)
                                   cgcAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AAAACACA‑ACAAAAAAT‑GGAGTTGGCATGATG‑AGCGAAAATAATAAAG‑AACAAACAAAGAAAAAATTGAAAAAGAATGTCGGTaa                                                                                                                                                                                                        >  2:763793/1‑239 (MQ=255)
                                        tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAAT‑ACAAAAACT‑GGAGTTGGCATGATG‑AGCGAAAGAAATAAAC‑AACAGGCAGAGAAAAAATTGACAGAGAATGTCGCTAAAtttt                                                                                                                                                                                                   >  1:944415/1‑238 (MQ=255)
                                        tgtATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAAATTTTTA‑AAACAAAA‑AAAAAAAAT‑GGAGTTTGCATTGAG‑GGAGGAATGAATAAGC‑AAAAAAAAGGGAAAAAGATGACAGCAAATGTCACTAACtttt                                                                                                                                                                                                   >  2:660806/1‑238 (MQ=255)
                                             ttCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAA‑AAAAAAACA‑GGAGTTTCCATGTTG‑GGCGAAAGTAATAAAC‑AACACGCAGGGAATAAAATGACAGAGATTGTCGCTAACTTT‑Acatcc                                                                                                                                                                                             >  1:1158443/1‑235 (MQ=255)
                                               cGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGGAATTTTTTC‑AGAAAAAA‑AAAAAAAAC‑GGGGTTTCCCATATG‑GGCGAAAGAAAAAAACAAAAAGACAG‑GAATAAAGTGTAAAAGATTGTTGCTAACTTT‑Tcccacat                                                                                                                                                                                           >  1:1223418/1‑234 (MQ=255)
                                                  aaaaCATTGCGCTCCCCTTCTGGTGCAAAAAATTTATTCTTATTTTCGCGTGGATTCACAAACTTTAAATGAAATATTCACGGGGGAAAAAAATATAAAACCACATTTTTGGGGGTGTGTGGGGGCGGGAAATTTTTCC‑AAAAAAAT‑AAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAAAAAGC‑AACAGGAGGTGAATAAGTTGACAGAGATTGTCGCTAAATTC‑ACCGCCATGAt                                                                                                                                                                                        <  2:785710/239‑1 (MQ=255)
                                                  aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAT‑ACAAAAACT‑GGGGTTGCCATGATG‑AGGGAAAGTAATAAGA‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                        >  1:618666/1‑239 (MQ=255)
                                                    aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAAA‑AAAAAAAAA‑GGGGGTGCCATGATG‑AGGGAAAGAAATAAAA‑AAAAAGGAGTGAATAAGTTGACAGAGATTTTTGCTAAATTT‑ACCGCCATGAttt                                                                                                                                                                                      >  1:190459/1‑239 (MQ=255)
                                                      cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAA‑AAAAAAAAT‑TGAGTTGCCATGATG‑AGGGAAAGTAATAAAC‑AACAGGGAGTGAATAAATTGACAGAGATTGTTGCTAACTTT‑ACCGCCCTTAttttt                                                                                                                                                                                    >  1:847286/1‑237 (MQ=255)
                                                            cATTCCCTGCTCTGGCGCAATATTCATTCTTATTTACGCTTTGATTCACAAACTGTTAATTACATATTCACGGGGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGAAAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAATAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGa                                                                                                                                                                              <  2:422381/239‑1 (MQ=255)
                                                             aTTCCCTGCTCTGGCGCAATATTAATTCTTATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTGGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGTCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGaa                                                                                                                                                                             <  2:707159/239‑1 (MQ=255)
                                                              ttCCCTGCTCTGGCGCAATATTCTTTTTTATTTTCGTGTAGATTCACGAACTTTTAATTAAATATCCGCGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAATTTTTTCA‑AGACAAAT‑ACAAAAACT‑GGAGTGGCCAGGATG‑AGCAAAAGTAATAAGA‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAAt                                                                                                                                                                            <  2:834286/239‑1 (MQ=255)
                                                               tCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGAGAAATTTTTC‑AAAAACAA‑ACAAAAAAT‑GGAGTTTCGAAGAAG‑AGCGAAAATAATAAAC‑AACAAGCAGTGAATAAATTTACAGAGATTTTCACTAAATTT‑ACAACCATGATTTCtcacacaat                                                                                                                                                                            >  2:1136401/1‑230 (MQ=255)
                                                                cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGAAAAAT‑ACAAAAACT‑GGAGGTGTCATGATG‑GGAGAAAGGAATAAAC‑AAAAAGCAGTGAATAAAGTGAAAGAGATTGTTGCTAAATTT‑TACGCCATGATTTTTTCCCCAATg                                                                                                                                                                           >  1:422381/1‑238 (MQ=255)
                                                                     ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAAA‑ACAAAAACT‑TGAGTTGCCATGATG‑AGGGAAAGGAATAAGA‑AACAGACAGTGAATAAGTTGACACAGATTGTCGCTAAATTT‑TCCCCCCAGATTTCTACCCCAATGCCtgat                                                                                                                                                                     >  1:1089593/1‑239 (MQ=255)
                                                                     ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAA‑ACAAAAAAT‑GGAGGTGCCCTGATG‑AGCGAAAGTAATAAAC‑AAAAAGCAATGAATAAATTGAAAGAGATTGTTGCTAACTTT‑ACCCCCATGAATTTTACCCCGAAGCCtgat                                                                                                                                                                     >  1:994363/1‑239 (MQ=255)
                                                                          gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAA‑ACAAAAAAT‑GGAGTTGCCATGATG‑AGCGGAAGTAATAAAC‑AAAAAGCAGTGAATAAATTTACAAAGATTGTTGCTAACATT‑ACCGCCATGATTTTTACCCGAATGCCTGGTGACgt                                                                                                                                                                >  1:374205/1‑239 (MQ=255)
                                                                               atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAT‑ACAAAAAAT‑GGAGTTGCCATGATG‑AGCGGAAGTAATAAAC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ATCGCCATGATTTCTACCCGAATGCCTGATGACGtggggg                                                                                                                                                           >  1:553213/1‑239 (MQ=255)
                                                                                ttttaatttTTATTATCGGTTTGATTCACAAACTGTTAATTACATATTCGTGGGGGAAAAAAAAAAAAAACCACATTTTTGGGTGTAGTTTGTGGCGGTGAATTTTCCC‑AGAAAAAT‑AAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  2:1037681/234‑1 (MQ=255)
                                                                                tatttattTTTATTGTAGGTTTGATTCACGAATTGTTAATTAAATTTTCAGGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGGGGGGGGAAATTTTTCA‑AAAAAAAT‑AAAAAAACG‑GGGTTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  2:647802/239‑1 (MQ=255)
                                                                                tattatttcTTATTTTGACTTTAATTCACAAACTGTTAATTAAATATTCGGGGGGCAAAAAAAAAAAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAATTTTTTCA‑AAAAAAAT‑AAAAAAACT‑GGAGTTGCCTTGAGG‑AGCGAAATTAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGATATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  2:526835/233‑1 (MQ=255)
                                                                                tatTCATTCTTATTTTCGCTTTAATTCACGAACTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GAAGTTGCCATGATG‑AGCGAAATTAATAAGC‑AACAGGCAGTAAATAAGTTAACAGAGATTGTCGCTACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  1:1098660/239‑1 (MQ=255)
                                                                                aattcattcTTATTTTCGTGTTGATTCACAACGTGTTAATTAAATATTCCCGGGGGAAAAAAAAATAAAACCACATTTTAAGTGGAAGTTTGTGGGGGTGAATTTTCCA‑AGACAAAA‑AAAAAAACT‑GGAGTGGCCAGGAGG‑AGCAAAAGTAAAAAGC‑AAAAGCAGGTAAATAATTTAAAAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  2:1225991/238‑1 (MQ=255)
                                                                                        cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATGCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AAACAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa                                                                                                                                                  <  1:877032/239‑1 (MQ=255)
                                                                                          tATTTTCGGGTTGATTCACGAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAATTTTTCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                <  1:1166046/239‑1 (MQ=255)
                                                                                          tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTA‑AAACAAAT‑ACAAAAAAT‑GGAGGTTGCATGGTG‑GGAGAAAGTAAATAGC‑AACAAGAAGAGAATAAGATGACAGAGATTGTAGCTCAATTT‑AACGCAACGGATTTTAAACGAATGCCTGATATAGCGGTGAGGAAACTaaaa                                                                                                                                                >  2:686417/1‑239 (MQ=255)
                                                                                          tATTTTCGCGTTGATTCACAAACTGTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTATTTGGTGGCGGTGAATTTTTCC‑AGACAAAT‑AAAAAAACG‑GGAGTTGCAAGGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGAGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                <  1:980562/239‑1 (MQ=255)
                                                                                          tATTTTCGCGTTAATTCACGAATTTTTAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑AGTGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGGGATTTTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa                                                                                                                                                <  1:901204/239‑1 (MQ=255)
                                                                                                 gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑ATACAAAA‑AAAAAAACT‑TGAGTTGCCCTGATG‑AGCGAAAGTAATAAAC‑AACAAGCAGTGAATAAATTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTTTAACCCAATGCCTGATTACGTGGGGGGTAAACTACAACAACTaa                                                                                                                                         >  1:459662/1‑239 (MQ=255)
                                                                                                    ttGATTCACGAACTGTTAATTACATTTCCACGGTGGCAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GAATTTGCCATGATG‑AGCAAAATTAATAAGC‑AACAGGCAGTAAATAAGTTAACAGAATTTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAgg                                                                                                                                      <  1:770039/239‑1 (MQ=255)
                                                                                                                   ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTATTTTGTGGCGGTAAATTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAAcgtcgt                                                                                                                       <  1:1046637/239‑1 (MQ=255)
                                                                                                                   ttAATTACATATTCACGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGAt                                                                                                                                                                                        <  1:420869/174‑1 (MQ=255)
                                                                                                                       ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGAt                                                                                                                   <  1:972372/239‑1 (MQ=255)
                                                                                                                           atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTT‑AAACAAAA‑ACAAAAAAT‑TGAGTTTCCCTGATT‑AGCGAAAGTAATAAAC‑AACAAGCAATGAATAAAATGAAAGAGAATGTTGCCAACTTT‑ACCCCCCACATTTTTTACCCCATGCCTGATGACGTGGTGGGTAAACTAAAAAAAACAAAAGATGCCCGAACGCCGTCGGTgggg                                                                                                               >  2:9497/1‑239 (MQ=255)
                                                                                                                            ttttaagggTGGAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGTGGAGGTGAATTTTTCA‑AGAAAAAA‑AAAAAAACG‑GGAGTTGCAATGATG‑AGCAAAAGTAATAAGC‑AACAGGCAGTGAATAGGTTGACAGAGATTGTGGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                              <  2:618666/232‑1 (MQ=255)
                                                                                                                            tatTCCCGGTGGAAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                              <  1:593341/239‑1 (MQ=255)
                                                                                                                            tatTCAGGGTGGAAAAAAATAAAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGAAAAAT‑ACAAAACCT‑GGAGTTGCCATGATG‑AGCAAAAGAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                              <  1:559706/239‑1 (MQ=255)
                                                                                                                            tatTCACGGTGGAAAAAAATAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGAAAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGa                                                                                                              <  1:1193615/239‑1 (MQ=255)
                                                                                                                             atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAT‑ACAAAAAATGGGAGTTG‑CATGGTG‑GGCGGAAGGAATAAGC‑AAAAAGCAGTGAAAAAATTGACAAAGATTGTCGCTAAATTT‑TACGCCCTGAATTCTAACCCAATGCCTTATGACGTGGGGGGTAAAATAAAACAACTAAAAGAAGCCCAAAAGTACTCGATggggga                                                                                                             >  1:789931/1‑237 (MQ=255)
                                                                                                                               tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTC‑AGACAAAT‑ACAAAAAAA‑GGAGTTGGCATTATT‑GGCGAAAGAAAAAAGC‑AACAAGCAGTGAATAAATTTACAGAAAATGTCGCTAACTTT‑ACCCCCACGATTTTTACCCGAATGCCTGATGACGTGGTGGGTAAACTAAAACAACCAAAAGATGCCGAAACACCGTCGCTGGGGgaaa                                                                                                           >  1:1128967/1‑239 (MQ=255)
                                                                                                                               tCACGGGGAAAAAAAATAAAAAACCAAATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCC‑TGAAAAAA‑AAAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTCGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGaaaa                                                                                                           <  2:803893/239‑1 (MQ=255)
                                                                                                                                 aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTC‑AAAAAAAA‑AAAAAAAAA‑GGGGGTGGCATGAGG‑AGCGGAAGAAAAAAAA‑AAAAGAAAGAGAAAAAAATGAAAGAGATTGTTGCTAACTTT‑ACAGCCAGGATTTCTTCCAGAATGACGGGTGAGGGGGGGGGTAAAATAAAAAAACTAAAAGATGCCGAAAAACGGTCGGTGGGGgaaaat                                                                                                         >  2:947587/1‑237 (MQ=255)
                                                                                                                                    gtgaaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGGGGCGGTAAATTTTCCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGGCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAAtt                                                                                                         <  1:697045/231‑1 (MQ=255)
                                                                                                                                    gTGGCAAAAAATATAAAACCCCATTTTTAGTGTTATTTTGGGGCGGTGAATTTTTCC‑AGCAAAAT‑AAAAAAACG‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                       <  1:352262/238‑1 (MQ=255)
                                                                                                                                    gTGGAAAAAAAAATAAAACCACATTTTTAGTGGTAGTTGGTGGCGGTGAATTTTTCA‑AAAAAAAT‑ACAAAAACG‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGTAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                       <  2:1210753/238‑1 (MQ=255)
                                                                                                                                    gTGGAAAAAAAAAAAAACCCACATTTTAGGTGGGAGTTGGTGGGGGAAAATTTTCAC‑AGACAAAT‑AAAAAAAGT‑GGAGTTGCCATGATG‑AGCAAAATAAATAAGC‑AACAGGCAGTGAATAAGTTAACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTAt                                                                                                       <  2:355353/238‑1 (MQ=255)
                                                                                                                                       gaaaaaaaaaaaaaACCCCATTTTTAGGGGGGGTTTGTGGGGGTGAAATTTTCC‑AAAAAAAT‑ACAAAAACT‑GGAGTTCCCATGAAG‑GGCAAAAGTAAAAAGA‑AACCGGCGGTGAATAAGTTAACAGAGATTGCCGCAAATTTA‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTa                                                                                                    <  2:944415/236‑1 (MQ=255)
                                                                                                                                       gaaaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTCCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                                                                                                                                                          <  1:462259/182‑1 (MQ=255)
                                                                                                                                       gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCCTGATG‑AGCGAAAGGAATAAGC‑AAAACGCAGGGAATAAAGTGGCAGAGATTGTGGCTAAATTT‑TCCCCCACGATTTCTACCCCAATGGCTGATGACGGGGTGGGTAAACTAAAAAAGCTAAAAGATGCCGAAAAGCCGTCGGTGGGGGAAATTATTTa                                                                                                    >  1:844952/1‑238 (MQ=255)
                                                                                                                                           aaaaTTTAAACCCACATTTTTTGT‑GTTGTTTGTTGGGGGGAATTTTTCCAAAAAAAAT‑AAAAAAACT‑GGAGTTGCCATGATG‑GTCGAAAGATATAAGC‑AACAGCCGTTGAAAAAGTAGACAGGTATTGTAGTTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATa                                                                                               <  2:965279/239‑1 (MQ=255)
                                                                                                                                             aaTATAAAACCAGAGTAATAGTGTTGTTTTTGGGCGATGAATTTTTCC‑AGACAAAT‑ACAAAAACG‑GAAGTAGCAATGATG‑ACGAAAAGTAATAGGA‑AACGGGCAGTCAATAATTTGACGGAGTTTGTGTAAAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                             <  1:48150/239‑1 (MQ=255)
                                                                                                                                             aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTAAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCAAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                             <  1:162693/239‑1 (MQ=255)
                                                                                                                                             aaTATAAAACCACAGTTTTGTTGGTAGTTTGTGG‑GGTGAAATTTTCCAAGACAAAT‑AAAAAACCT‑GGGGTTGCTATGATG‑AGCGAAAGAAATACGC‑AACAGGGGGTAAATAAGTTGACAGGGATTGTCTATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                             <  2:1158443/239‑1 (MQ=255)
                                                                                                                                             aaTAAAAACCCAAATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCA‑AAACAAAA‑ACAAAAACT‑GGAGTTGCAATGATG‑AGCGAAAGAAAAAAGA‑AACAGGCAGTAAATAAGTTAACAGAGTTTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACg                                                                                             <  2:1223418/239‑1 (MQ=255)
                                                                                                                                                      ccACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTCCC‑AGACAAAT‑ACAAAAACG‑GGAGTTGCCATGAGG‑AGCAAAAATAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGac                                                                                    <  1:7546/239‑1 (MQ=255)
                                                                                                                                                                      atttgttgGGGGTGAATTGTTCC‑AGACAATT‑ACAAAAACA‑GGAGTTGCCATAATG‑AGGTAAAGTAATAAGC‑AACAGGCAGGAAATAAGTTGACAGGTATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                    <  1:452729/233‑1 (MQ=255)
                                                                                                                                                                      aGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                    <  1:660806/239‑1 (MQ=255)
                                                                                                                                                                       gTTTGTGGGGGTGAATTTCACG‑AAACAAAT‑ACAAAAACT‑GGAGTTGCCAAGATG‑AGCAAAAGAAATAAAC‑AAGGGGCGTTGAAAAAGTGAACAGATATTGTCGATACTTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGa                                                                    <  2:14921/238‑1 (MQ=255)
                                                                                                                                                                           gtgGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                               <  1:1037511/239‑1 (MQ=255)
                                                                                                                                                                            tgGCGTTAAATTTTTCA‑AAAAAAAT‑ACAAAAACT‑GGAGTTGCCAAGATG‑AGAGAAAGAAATAAGC‑AACGGGCAGTGAATAAGTGGAAGGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                               <  2:459662/238‑1 (MQ=255)
                                                                                                                                                                            tgGCGGAAAATTTTGAC‑AGAAAAAT‑ACAAAAACT‑GAAGGGGCAATGATG‑AGCGAAAAAAATAAGC‑AAAAGGCGTTGAATAAGTGGAAAGAAAGTGTCGAAACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGGCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                               <  2:712962/238‑1 (MQ=255)
                                                                                                                                                                            ggggggtaattttttCC‑AACAAAAA‑ACAAAAACG‑GGAGTGGCCATGATG‑GGCGAAAGAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGAc                                                               <  1:389799/228‑1 (MQ=255)
                                                                                                                                                                                      tttttCC‑AGAAAAAA‑AAAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAAAAAGC‑AACAGGCAGTGAATAAGTTGAAAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcc                                                    <  1:376748/239‑1 (MQ=255)
                                                                                                                                                                                          tCC‑AGAAAAAT‑AAAAAAACT‑GGATTTCCAATGATG‑AGCGAAAGTAAAAAGC‑AACAGGCAGTAAATAAGTTGACAGAGATTGTCGATAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTcctgcc                                                <  1:244049/239‑1 (MQ=255)
                                                                                                                                                                                              aGAAAAAA‑ACAAAAATT‑GGAGTTGCCAAGATG‑AGCGAAAGTAAAAAGC‑AACAGGAAGTGAAAAAGTTGACAGAGATTTGCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTTCCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGt                                             <  1:817651/239‑1 (MQ=255)
                                                                                                                                                                                                    aaaaaaaaaaCT‑GGAGTTGCCAGGAGG‑GGCAAAAGAAAAAAGA‑AAGAGGCAGAAAATAAGTTGAAAGAGATTGTCGTAAATTTA‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGa                                        <  2:414315/234‑1 (MQ=255)
                                                                                                                                                                                                       aCAAAAACG‑GGAGTGGCCATTATG‑AGCGAAAGTAAAAAGC‑ACGAGTGAGTGAATAATTTGACAGATATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGacac                                     <  2:1000215/239‑1 (MQ=255)
                                                                                                                                                                                                         aaaaaGT‑GGAGTTTCCATGAGG‑AGAGAAAGTAAAAACC‑AAAAGTGAGTAAATAAGTTGACAAAGGTTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCg                                   <  2:1150314/239‑1 (MQ=255)
                                                                                                                                                                                                           aaaCT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCggg                                 >  1:850849/1‑239 (MQ=255)
                                                                                                                                                                                                            aaCT‑GGGGTGGCAATGATG‑AGCAAAAGAAAAAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAATTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                <  2:513028/239‑1 (MQ=255)
                                                                                                                                                                                                            aaCT‑GGATTTGCCATAATG‑AGCAAAAGCAAAAAGC‑AACAGCATTTCAATAAGTTAAAAGAGATTGTCGTTAGTTTT‑ACCGCCATGATTTCTACCCGAATGCCTTATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGTAACGTCGTCGATGGGGAAAATTATCTCCCAGCCGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                <  1:732324/239‑1 (MQ=255)
                                                                                                                                                                                                             actgggAGTTGCCAGGAAG‑AGCGAAAGTAATAAGC‑AAAAGGGAGTAAATAAGTGGACAGAGATTGCCCTTATCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCgggg                                <  2:553213/235‑1 (MQ=255)
                                                                                                                                                                                                                 ggAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGAt                            >  2:1115850/1‑239 (MQ=255)
                                                                                                                                                                                                                   aGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTa                          >  2:992747/1‑239 (MQ=255)
                                                                                                                                                                                                                       gCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTATCTTT‑ACCGCCATGACTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGTAAAATTATCTAACATACGATGTTCTACAACATGCAAAAAGCGATTGAACTGACTCGTCATGCCTGTCAGGACACCGGGGAGATTATGtt                      >  2:1054914/1‑239 (MQ=255)
                                                                                                                                                                                                                       gCCATGATG‑AGCGAAAGAAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAAATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGtt                      <  1:686417/239‑1 (MQ=255)
                                                                                                                                                                                                                            gatg‑aGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCg                 >  2:354023/1‑239 (MQ=255)
                                                                                                                                                                                                                                   cGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg           >  2:777400/1‑239 (MQ=255)
                                                                                                                                                                                                                                     aaaGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGTTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt          <  1:411796/238‑1 (MQ=255)
                                                                                                                                                                                                                                     aaaGTAATAACC‑AAAAGCAAGGAAGTAGGTTG‑CAGGGATTGTTGGTAAATTTCGCCGCCCTGATTTCTACCCGAAGGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTCCCATACGATGTTCGACAACATGCAAAAAGCGATTGCCCTGAATCGTCCTGCCTTTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAg           <  2:903565/237‑1 (MQ=255)
                                                                                                                                                                                                                                      aaGTAATAAGC‑AACAGGAAGTGAATAAGTTGACAGAGATTGTCGCTACCTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGt          <  2:789931/237‑1 (MQ=255)
                                                                                                                                                                                                                                              aGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTccc  >  2:212044/1‑237 (MQ=255)
                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                            
ATTCAGCATCGTTAATTATCCGCAGTTGTGATAAGCGCAGTGTATTTCGCAAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCC‑AGACAAAT‑ACAAAAACT‑GGAGTTGCCATGATG‑AGCGAAAGTAATAAGC‑AACAGGCAGTGAATAAGTTGACAGAGATTGTCGCTAACTTT‑ACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAAGGATGCCGAAACGTCGTCGATGGGGAAAATTATCTACCATACGATGTTCGACAACATGCAAAAAGCGATTGACCTGAATCGTCCTGCCTGTCAGGACACCGGGGAGATTATGTTCTTCGTTAAAGTCGGTTCCC  >  NC_000913/3206248‑3206718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A