Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F17 I0 R1
|
98 |
120.7 |
2441348 |
95.3% |
2326604 |
231.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,615,865 |
A→C |
16.3% |
T209P (ACC→CCC) |
nikB → |
nickel ABC transporter permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,615,865 | 0 | A | C | 16.3%
| 183.9
/ 3.2
| 78 | T209P (ACC→CCC) | nikB | nickel ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (39/20); new base C (2/13); total (41/37) |
| Fisher's exact test for biased strand distribution p-value = 3.11e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTACGTTTCATCGCGTTTCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTACGCTGATGATGGTGGT > NC_000913/3615643‑3616097
|
gTACGTTTCATCGCGTTTCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTgcg < 2:968858/239‑1 (MQ=255)
cATCGCGTTTCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTTGCAGCACATCATTTTTCCTGCGGTTTCCATTGGCTTTATGTCGGTGGCGGTTAACGCGCGTTTACTGCGCGCCTGTATGCTGGACGGTGCCGGTCCGCGTCACGCCACCCGGGCGGGtgcgccggg > 2:974915/1‑226 (MQ=255)
tCGCGTTTCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAAc < 1:1085134/239‑1 (MQ=255)
ttCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGGTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTTTGCTGGACGTCGCCGGGCAAGGTCCCGGCCCCTGGGCCGCTCTGCGCGGCCTgcgcgccaa > 2:776728/1‑230 (MQ=255)
tCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCt < 1:654390/228‑1 (MQ=255)
gCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGGCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGAc < 2:294956/238‑1 (MQ=255)
tCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGGCCCTCATTTTGCCTGCGGTTTCCATTGCCTTTTTGTCGCTGGCGATTAACGCGCGTTTTCTTCGCGCCCGTATGCTGGGCGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGCACGGCACGCAGaccgaccg > 2:182094/1‑239 (MQ=255)
tCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCCGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGGTTACTGCGCGCCAGTATGCTGGCCGTCGCCGGTCAGCGTCCCGTCACCTGGGCGCCGCTGGCGGGCCTGGACGAGaaa > 2:654390/1‑228 (MQ=255)
cGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACg < 1:78303/238‑1 (MQ=255)
cGATGCCTAACTTCTGGCTGGCGGTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGGCCGAACg < 1:311322/238‑1 (MQ=255)
tGCCTAACGGCTGGCTGGCGTTTTTACTGGTGAGTGTGGTTTCGGTGTATCTGCAATGGCGACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTGCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGc < 2:1137949/239‑1 (MQ=255)
gCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCTCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGcc < 1:141609/239‑1 (MQ=255)
aCTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAt > 1:810407/1‑238 (MQ=255)
aCTTCTGGCTGGCGTTTGTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑c < 1:483376/239‑1 (MQ=255)
tggctggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACCT‑CCTgc > 1:928275/1‑238 (MQ=255)
gctggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGTGCGCGTCTGCGCGGCCTGGACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCa > 1:264513/1‑239 (MQ=255)
gctggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCa > 1:79590/1‑239 (MQ=255)
gctggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGGTTCCATTGCCTTTATGGCGCTGGCGATTAAACCGCGTTTACTGTGCGCCAGTATTCTGGACGTCGCCGGTCAGCGTCACGTCACCCGGGCGCGGCTGGGCTGCCTGGACGGCAAACAGACCGAACGTCGCCCCCT‑CCTgcgcc > 2:106347/1‑238 (MQ=255)
ctggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCa < 2:365645/238‑1 (MQ=255)
ggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTggg < 2:625593/182‑1 (MQ=255)
ggcGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTggg > 1:625593/1‑182 (MQ=255)
cGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACCGCACCTGGGCGCGTCTGCGCGGCCTGACCGGCAAACAGACCGAACGTCGCCACAT‑CCTGCGCACTGc > 1:1096376/1‑238 (MQ=255)
tttACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGc < 2:313557/239‑1 (MQ=255)
gggggATGGCGTTTTCGGGTTAGTTGAAATGGCTTCCCGGGGTGGGTTACGGCGGCTGGCAGCACATCATTTGGCCTGCGGTTTCCATTGCTTTTAGGTCGGTGGCGATTAACGCGCGTTTACTGCGCGCCAGTAGGCTGGCCGTCGCCGGTCAGCGTCACGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCg < 2:1058242/235‑1 (MQ=255)
tGGCGTTTGCGGTGTATCTGCAATGGCTCCCCGCGATGGGTTACGGGGGCTGGCGGCACCTCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCgatgat < 2:976643/238‑1 (MQ=255)
cGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGTTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCACTGCCGATGATCAc < 1:171856/238‑1 (MQ=255)
cGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCAc < 1:6729/238‑1 (MQ=255)
tttttGGTTGTATCTGCATTGCCTCCCCGCGATGGGTTACGGGGGTTGGCAGCCATTCATTTTGCCTGCGTTTTCCATTCCCTTTATGCCGCTGGCGATTACCGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCCCGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGCCCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCAccg < 2:180195/238‑1 (MQ=255)
cGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTg < 1:72202/239‑1 (MQ=255)
cGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTGGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTg < 1:335009/239‑1 (MQ=255)
gtACCTGCAGTGGCTCCCGGCGATGGTTTCCGGCGGCGGGCAGCACATCATTTTGCCTGCGGTTCCCATTGCTTTTATGTCGCTGGCGATTAACGCGCGTTTACGGCGCGCCAGTAGGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTgggg < 2:3558/238‑1 (MQ=255)
aTGGCTACCCGCGTTGGGTTACGGCGGCTGGCACCACATCATTGTGCCTGCGGTTTCCATTGCCTTTAGGTCGCTGGCGTTTACCGCGCTTTTCCGGCGCGCCGGTATGCGGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCg < 2:1087345/239‑1 (MQ=255)
aTGGCTACCCGCGATGGGTTACGGCGGCTGGCAGGATATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGGGATTAACTCGCGTTTACTTCGGGCCAGTATGCGGGGCGTTGCCGGTCCGCGCCCCGTACCCCTGGCGCGTCTGCGCGGCCCGGACGAAACAACGACCCAACGGCGCCACATCCCTGC‑CAATGCATCGCCGCCGCTGATCCCCGCCTCGGGGATACatcgtg > 2:71801/1‑235 (MQ=255)
aTGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGGGGGGGTGCATATCg > 1:304059/1‑239 (MQ=255)
gccgccccGCGTTGGTTAATGGGGGCTGGAAGCACGTCATCTTGTCTGCGGCTCCCGTTGCCTTTGTGTCGCGCGGGCTGAACGCGCGTTTGTCGCGCGCCCGTAGGTTGGGCGCCGCCGTTCGGCGTCACGGCGCCGGGGCGCGTCTCCGCGTCCTGAACGACATACAGACGGACCTTCGCCACTT‑CCCGCGCGTTGCCTGGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGc < 2:425215/234‑1 (MQ=255)
gCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCCGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGCTGATCACCGCCGTGGGGATGCATATCGGCg > 1:47130/1‑239 (MQ=255)
ctccgcgcgATGGGTTACGGCGGCTGGGAGCACATCATTTTGCCGGCGGTTTCCTTTGCTTTTATGTCGCTGGCGATTAACGCGCGTTTCCTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGACCGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCg < 2:372206/233‑1 (MQ=255)
cgccccGCGTTGGGTGACGGCGCCTGGCACCCCATCATTTTGCCTGCGTTTCCCTTTGCCTTTATGTCGCGGGCGCTTAACGCGCGTTTACTGCGCGCCGGTATGCTGGCCGTCCCCGGTCAGCGTCCCGTCCCCTGGGCGCGTCTGCGCGGCCGGACCGCCAAACAGCCCGACCGTCGCCACAT‑CCTGCGCAATGCCTGGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCg < 2:372485/235‑1 (MQ=255)
cgATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGGTGATCACCGCCGTGGGGATGCATATCGGCGAACTGAtt > 1:824503/1‑239 (MQ=255)
aTGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTCCCCCATGCCCCGCTCCCGACGATCACCGCCGTGGGGATGCCTATCGGCGAACCGATTg > 2:1125921/1‑238 (MQ=255)
ttACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGCTTGGCggg > 1:901513/1‑238 (MQ=255)
ggcAGGCCGCACCGCAGTTTGCCGGGGGTTCCCAATGCTTTTAGGGCGCTGGCGATTAACGCGCGCTTCCTGCGGCCCAGTATGCGGGACGTCGCCGGCCAGCGTCACGTCCCCGGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACCTGGCCACAT‑CCTGAGCAATGCCTCGCTGCCGAAGACCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACgatga < 2:1119674/238‑1 (MQ=255)
gcTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGCACGACAAACAGACCGAACGCCGCCACCT‑CCTGCGCCATGCCTCGCTCCCGCTGCTCACCGCCCGGGGGTTGCCCATCGGCGAACTGATTGGCGGGACgcgtatt > 2:379216/1‑233 (MQ=255)
gcTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGGCGGTGGtt > 1:402877/1‑239 (MQ=255)
gcTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCCGGGCGCGTCTGCGCGGCCTGAACGGAAAACAGACCGCACGCCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGCCGATCACCGCCGTGGGGAGGCATAGCGCGCAACTGATTGGCGGGGCggggctt > 2:103729/1‑233 (MQ=255)
gcaCGTTATTGTGCCTGCGGTTCCCGTTGTCTTTGTGGCGCTGGCGATTAACGCGCGTGTACGGGGCGCAGGTGTGGTGGCGGGCGCCGGTCAGCGTCACGTCGCCTGGGCGCGTCGGCGCGGCCTGAACGACAAACAGACCGACGGTGGCCACAT‑CCTTCGCAATGCCTCGCGGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGaaa < 2:281865/239‑1 (MQ=255)
gCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGCTGATCACCGCCGTGGGGATGCATATCGGCGAACTGCTTGGCGGGACGATGATTTTCGAAAACCTGTTTg > 2:491943/1‑236 (MQ=255)
cTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTg > 1:37030/1‑238 (MQ=255)
cGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCg > 2:227428/1‑239 (MQ=255)
tCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGt < 1:71864/239‑1 (MQ=255)
ccATTGCCTTTATGTCGCTGTCGATTAACGCGCGTTTACTGCGCGCCAGTATGCGGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTc < 1:258727/239‑1 (MQ=255)
ttATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTAt > 1:889976/1‑239 (MQ=255)
tATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGGTGATTATCGAAAAAATCTTTGCCTGGCCGGGCGGCGGGCGCTacg > 2:661910/1‑237 (MQ=255)
aTGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGGTTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGGCATGc > 1:671150/1‑239 (MQ=255)
gCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGGTGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGCTCATTATCGGCAACATCTTTGGCTGGCCGGGCGTCCGGGGCCATGCGgggt > 2:364811/1‑239 (MQ=255)
gCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGCACTGATTGGCGGGACCATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCCGGCGCTCTGCGgtgg > 2:1012973/1‑238 (MQ=255)
gCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGGTGATTATCGAAAAAATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGgtg > 1:634741/1‑238 (MQ=255)
gCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACCACTTTGCCTGGCCGGGCGTCGGGCGCTCTGCGgtg > 1:125442/1‑238 (MQ=255)
gCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACAATTTTGCCCGGCCGGGCGCGGGGGGCAAGGCGgtg > 2:796820/1‑238 (MQ=255)
cTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGCCGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGCACGACAAACAGCCCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGGCGATGGTTATCGGAAACCACCTTGCCTGTCCGGGCGTCGGgcgccgctcggtgg > 2:579992/1‑228 (MQ=255)
cTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAACACATCTTTGCCTGGCCGGGCGGCGGGCGCTATGCGGGGTc > 2:1079711/1‑239 (MQ=255)
gggATTAACGCCCGTTTAGTGCGCCCCAGTAGGGTGGACGCCGCCGGACAGCGTCCCGTCCCCTGGGCGCGTCGGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCGGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCgg < 2:1027673/236‑1 (MQ=255)
gattacccggcgTTTCCTGCGCGCCGTGATGCTGGCCCTCCCCGGTCAGCGTCACGCCCCCGGCGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGACCGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCGGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCg < 2:264513/229‑1 (MQ=255)
gATTAACGCGCGTTTCCTCCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCCCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCg < 1:106347/238‑1 (MQ=255)
cgTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGAATATCGAAAACATCTTTGCCTGGCCGGGCGGCGGGGGCTATGCGGTGTCGGCGA‑TTTTTAACCg > 1:62076/1‑239 (MQ=255)
gTTTACGGCGCGCCAGTATGCTGGACGTCGCCGGGCAGCGTCACGTCTCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCAAAT‑CCTGCGCAATGCCGCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCg < 1:93466/238‑1 (MQ=255)
tttACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAACCAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGCTTGGCGGGACGACGGTTATCGAAAACCGCTTTGCCCGGCCGGGCGGCCGGCGCGTTGCGGGGGCGCCGAGTTTTTAACCg > 2:602373/1‑238 (MQ=255)
tttACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGAAGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGGGGTCAGCGGGGTCGGCGG‑TTTTTAACCgcg > 1:51166/1‑237 (MQ=255)
ttACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCGGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCGGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGa < 1:1000763/239‑1 (MQ=255)
cgcgcCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGGTGCATATCGGCAACCTCTTTGTCTGGCAGGGAGCCGGGCGCCATGCGGTGGTGGCGA‑TTTTTAACCCTGACTAtg > 2:1006991/1‑237 (MQ=255)
cgcCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTTGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGG‑TTTTTAACCGTGCATATcccg > 1:334868/1‑237 (MQ=255)
gtgcgtggcgccGCCGGCCAGCGCCACGCCCCCGGGGCGCGCCTGCGCGGCCTGAACGACAAACAGACCGACGGTGGCCACAT‑CCTGCGCAATGCCTGGCTGCGGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCa < 2:634741/228‑1 (MQ=255)
aTGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGAAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCa < 1:1079711/239‑1 (MQ=255)
tGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCAGGTGATCCAgggt > 1:850456/1‑236 (MQ=255)
gTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGGCGGTGGTTATACAAAACCTCTTTGCCTTGCCGGGCGTCGGGCGACATGGGGGGTCGGGGG‑TTTTTTACCGTGACGAATCGGCGTTCCCGTGCtttcc > 2:647132/1‑237 (MQ=255)
cGCCGGTCCGCGTCACGTCCCCGGGGGGCGTCTGCGCGGCCTGAACGACCAACAGACCGAGCGTCGCCACAT‑CCTGCGCAATGCCCCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTACg < 2:184474/238‑1 (MQ=255)
cGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTAc > 1:180987/1‑237 (MQ=255)
gCCGGTCAGCGTCACTTCCCCGGGGCGCGTCGGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTACGCt < 1:488642/239‑1 (MQ=255)
cgtcacgtcaCCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGGGATCCAGTGCTTTACGCTGATGAtggg > 1:95612/1‑238 (MQ=255)
gtcacgtcccCTGGGCGCGGCTGCGAGGCCTGAACGACAACCAGCCCGACCCTCACCTCTT‑CCGGCGCAATGCTTCGCTGCCGAAGATCACCGCCGTGGGGATGCTTTTCTGCGGTCTGATTTTCTGTACTATGATTATCTCAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTGTGCGGTGTCGTCGT‑TTTTTTACCTTTACTATCCGGTGATCCATTTCTTTACACTAATGAtggt < 2:1062961/238‑1 (MQ=255)
cccgtcacCGGGCCGCGTCTGCGCGGCCTGAAGGACAAACAGACCGAACGTCGCCACAT‑CCTGCGAAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTACGCTGATGAtggtggt < 1:58411/237‑1 (MQ=255)
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GTACGTTTCATCGCGTTTCTTGGCGTGTCGATGCCTAACTTCTGGCTGGCGTTTTTACTGGTGATGGCGTTTTCGGTGTATCTGCAATGGCTACCCGCGATGGGTTACGGCGGCTGGCAGCACATCATTTTGCCTGCGGTTTCCATTGCCTTTATGTCGCTGGCGATTAACGCGCGTTTACTGCGCGCCAGTATGCTGGACGTCGCCGGTCAGCGTCACGTCACCTGGGCGCGTCTGCGCGGCCTGAACGACAAACAGACCGAACGTCGCCACAT‑CCTGCGCAATGCCTCGCTGCCGATGATCACCGCCGTGGGGATGCATATCGGCGAACTGATTGGCGGGACGATGATTATCGAAAACATCTTTGCCTGGCCGGGCGTCGGGCGCTATGCGGTGTCGGCGA‑TTTTTAACCGTGACTATCCGGTGATCCAGTGCTTTACGCTGATGATGGTGGT > NC_000913/3615643‑3616097
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
