Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F35 I1 R1
|
10 |
104.0 |
3457386 |
97.9% |
3384780 |
143.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
755,646 |
C→A |
Y29* (TAC→TAA) |
sdhD → |
succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 755,646 | 0 | C | A | 98.9%
| 307.2
/ NA
| 89 | Y29* (TAC→TAA) | sdhD | succinate dehydrogenase, membrane subunit, binds cytochrome b556 |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (43/45); minor base T (0/1); total (43/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTACATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGG > NC_000913/755503‑755790
|
cGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAaatcat > 7:226463/1‑149 (MQ=255)
cGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAaatcat > 3:253285/1‑149 (MQ=255)
ccAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCAtt > 3:50312/1‑148 (MQ=255)
cTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATgg < 7:30600/145‑1 (MQ=255)
cTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTc < 8:257899/147‑1 (MQ=255)
tGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGt < 2:228983/147‑1 (MQ=255)
ttaCTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCg > 1:356424/1‑149 (MQ=255)
ttaCTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGGAACGAACTCCTCCGGATTAGGACTCATTGGCGTACATGATTTCATCCTCGTTATCGCTTCCGCTATCGTCCTGAAGCTCTATATCTTTTATATGGTCGGTGTTTTc < 2:171804/148‑1 (MQ=255)
gTGCTTTCACTTCTCGCAGGCGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGATCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGt < 8:209460/149‑1 (MQ=255)
gCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTgg > 3:251715/1‑149 (MQ=255)
cTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTgg < 4:251715/148‑1 (MQ=255)
tttCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCg > 5:48572/1‑149 (MQ=255)
cACTTCTCGCAGGCGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTCCCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAg < 4:292434/148‑1 (MQ=255)
cACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGc > 5:29744/1‑149 (MQ=255)
aCTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCt < 2:338255/149‑1 (MQ=255)
ttCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGa > 4:267170/1‑149 (MQ=255)
gCAGGAGTCCTAGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGTCa < 3:353441/146‑1 (MQ=255)
aGGAGTCCTCGTATGGTAAGCAACGCCTCCTCATTAGGACGCAAAGGCGTACATGATTTCATCATCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATg > 4:294666/1‑148 (MQ=255)
ggAGTCCTCGTATGGTAAGCACCGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTCCCAGTGGCGAGCTGACATATg > 4:225269/1‑147 (MQ=255)
ggAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGaa < 5:334981/149‑1 (MQ=255)
gTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTc < 5:368775/149‑1 (MQ=255)
cTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGa < 2:361348/135‑1 (MQ=255)
cTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGa > 1:361348/1‑135 (MQ=255)
tCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGa > 5:349405/1‑149 (MQ=255)
tCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGa > 2:8578/1‑149 (MQ=255)
tCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGa > 7:304089/1‑149 (MQ=255)
cGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTTGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGAt > 1:236253/1‑149 (MQ=255)
gTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGa < 8:130726/147‑1 (MQ=255)
gTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGa < 2:235478/147‑1 (MQ=255)
tGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGt < 4:253285/149‑1 (MQ=255)
aGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATGATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTttctt < 4:50312/149‑1 (MQ=255)
aGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTttctt < 3:371450/149‑1 (MQ=255)
gCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTttcttc < 6:349405/149‑1 (MQ=255)
gCAACGCCTCCGCATTAGGACGCAATGGAGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTttcttc < 5:275578/149‑1 (MQ=255)
aCGCCTCCGCATTAGGACGCAATGGCGTACATTATTTCAACCTCGTTCGCCCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCCAGCTGACATATGAACTCTGGATCGGTATCTTCgac > 6:70832/1‑147 (MQ=255)
cGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCct > 6:356615/1‑149 (MQ=255)
cTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCGTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGAGCGGTTTCTTCGCCTCTg > 4:320142/1‑149 (MQ=255)
cTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTg > 1:345070/1‑149 (MQ=255)
tCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGc > 1:64903/1‑149 (MQ=255)
ccGCATTAGGACCCAATGGCGTACATGATTTCAACCTCGATCGCGCTACCGCTATAGTCCTGACGCTCTAAATCATTTATATGGTCGGTATTTTCGCTACCAGTGGCGAGCTCACATAAGAAGTCTGGATCGGTTTCTTCGCCTCTCCg > 2:169841/1‑149 (MQ=255)
gCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTTACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGtt > 7:30061/1‑149 (MQ=255)
gCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGATGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGtt > 3:172147/1‑149 (MQ=255)
aTTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCa > 7:267870/1‑149 (MQ=255)
ttAGGACTCAATGGCGTACATTATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATAGGTTTCTTCGCCTCTGCGTTCAc < 3:50162/149‑1 (MQ=255)
gACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCaaa < 8:226463/149‑1 (MQ=255)
gACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCaaa < 2:52859/149‑1 (MQ=255)
gACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCaaa < 7:148457/149‑1 (MQ=255)
cGCAATTGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAgt < 3:237655/149‑1 (MQ=255)
cGCAATGGCGTACTTGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAgt < 1:47072/149‑1 (MQ=255)
aaTGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGtt > 7:267102/1‑149 (MQ=255)
gCGTACATGATTTCCTCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCTCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCAcc < 8:361946/149‑1 (MQ=255)
gCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCAcc < 3:128613/149‑1 (MQ=255)
aCATGATTTCATCCTCGTTCGCGCTTCCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGc < 2:39204/85‑1 (MQ=255)
aCATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGc > 1:39204/1‑85 (MQ=255)
aCATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCctgc > 1:208624/1‑149 (MQ=255)
cATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGtt < 6:366037/128‑1 (MQ=255)
cATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGtt > 5:366037/1‑128 (MQ=255)
cATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGG‑TTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCctgct < 1:313158/148‑1 (MQ=255)
aTGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGt < 5:407536/126‑1 (MQ=255)
aTGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCctgctg > 5:153549/1‑149 (MQ=255)
tGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTgg > 1:206180/1‑149 (MQ=255)
aTTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGc > 6:260288/1‑115 (MQ=255)
aTTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGc < 5:260288/115‑1 (MQ=255)
aTCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGtt > 3:380268/1‑149 (MQ=255)
aTCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGtt > 3:51902/1‑149 (MQ=255)
cTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGtttt < 2:345070/148‑1 (MQ=255)
cTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGtttt < 2:64903/148‑1 (MQ=255)
cTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTc > 1:339872/1‑149 (MQ=255)
cTCGTTCGCGCGACCGCTATCGTCCTGACGCGCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATCAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTc < 2:404816/149‑1 (MQ=255)
tCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTc > 3:382994/1‑148 (MQ=255)
tCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTc > 4:113403/1‑148 (MQ=255)
gTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGgcgc > 5:51977/1‑139 (MQ=255)
gTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGgcgc < 6:51977/139‑1 (MQ=255)
gTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCt < 8:304089/147‑1 (MQ=255)
gTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCt < 6:48572/147‑1 (MQ=255)
gcTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCTAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGAt < 6:311858/149‑1 (MQ=255)
tACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATc > 8:123106/1‑148 (MQ=255)
cTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGcc > 1:11184/1‑149 (MQ=255)
tATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCTCTGTTTTCTATCTTGATCCATGCCt > 6:371028/1‑149 (MQ=255)
tCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCt < 5:356615/147‑1 (MQ=255)
ccTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCg > 5:285775/1‑149 (MQ=255)
tGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCg > 8:347535/1‑89 (MQ=255)
tGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCg < 7:347535/89‑1 (MQ=255)
tGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCgg > 8:381249/1‑148 (MQ=255)
aCGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGc < 4:382994/147‑1 (MQ=255)
aCGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCAt < 3:225269/149‑1 (MQ=255)
aCGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCAt < 6:153549/149‑1 (MQ=255)
cGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCAtg < 8:223913/149‑1 (MQ=255)
gCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCAtgt < 5:70832/149‑1 (MQ=255)
tctAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTgg > 1:42151/1‑149 (MQ=255)
tctAAATCATTTATATGGTCGGTTATTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGCTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATAGGCATGTgg > 4:83072/1‑149 (MQ=255)
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CGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTACATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGG > NC_000913/755503‑755790
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGCTCCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTACATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGGCAGGT > NC_000913/755498‑755795
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CGCTCCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAAT > NB501016:230:HFVJLAFXY:4:11612:13689:17456/1‑151 (MQ=60)
CCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATT > NB501016:230:HFVJLAFXY:4:21401:25548:6391/1‑151 (MQ=60)
CCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTAGGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATT > NB501016:230:HFVJLAFXY:2:21108:13700:18394/1‑151 (MQ=60)
GCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTT > NB501016:230:HFVJLAFXY:2:11109:10663:20042/1‑150 (MQ=60)
CCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGT < NB501016:230:HFVJLAFXY:4:11405:14807:19281/147‑1 (MQ=60)
ATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGC > NB501016:230:HFVJLAFXY:1:21210:6085:9918/1‑151 (MQ=60)
TGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGC > NB501016:230:HFVJLAFXY:2:21108:19570:12784/1‑151 (MQ=60)
ttgaccttagtctatgcgctccattcacgaaaattgcgtCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCG < NB501016:230:HFVJLAFXY:4:11601:15630:12294/111‑1 (MQ=60)
CTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGC > NB501016:230:HFVJLAFXY:3:11409:9090:8480/1‑151 (MQ=60)
TCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCT > NB501016:230:HFVJLAFXY:3:11406:23555:4108/1‑151 (MQ=60)
CGCAGGAGTCCTAGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGTCAT < NB501016:230:HFVJLAFXY:2:21302:8051:18130/148‑1 (MQ=60)
AGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAG < NB501016:230:HFVJLAFXY:3:21509:4491:18003/151‑1 (MQ=60)
AGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCT < NB501016:230:HFVJLAFXY:3:21603:14804:8521/151‑1 (MQ=60)
CCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGAC > NB501016:230:HFVJLAFXY:1:21211:3254:7339/1‑137 (MQ=60)
CTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGAT > NB501016:230:HFVJLAFXY:3:21512:22880:7720/1‑151 (MQ=60)
ATCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGAT > NB501016:230:HFVJLAFXY:4:21502:18576:5646/1‑151 (MQ=60)
TCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTTGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATC > NB501016:230:HFVJLAFXY:1:21102:4248:18847/1‑151 (MQ=60)
AAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTC < NB501016:230:HFVJLAFXY:2:21305:19011:19376/151‑1 (MQ=60)
AGCAACGCCTCCGCATTAGGACGCAATGGAGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCG < NB501016:230:HFVJLAFXY:3:21410:17658:16300/151‑1 (MQ=60)
CCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGC > NB501016:230:HFVJLAFXY:1:21208:19872:10465/1‑151 (MQ=60)
CTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCG > NB501016:230:HFVJLAFXY:1:11110:7339:13620/1‑151 (MQ=60)
CGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTTACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTC > NB501016:230:HFVJLAFXY:4:11405:16752:17650/1‑151 (MQ=60)
CGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGATGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTC > NB501016:230:HFVJLAFXY:2:11307:15220:5842/1‑151 (MQ=60)
CATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCAC > NB501016:230:HFVJLAFXY:4:21408:19731:2038/1‑151 (MQ=60)
ATTAGGACTCAATGGCGTACATTATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATAGGTTTCTTCGCCTCTGCGTTCACC < NB501016:230:HFVJLAFXY:2:11109:10975:19411/151‑1 (MQ=60)
GGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAG < NB501016:230:HFVJLAFXY:4:11512:7107:6573/151‑1 (MQ=60)
ACGCAATTGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTG < NB501016:230:HFVJLAFXY:2:21106:8999:2571/151‑1 (MQ=60)
ACGCAATGGCGTACTTGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTG < NB501016:230:HFVJLAFXY:1:11107:24534:17546/151‑1 (MQ=60)
CAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTC > NB501016:230:HFVJLAFXY:4:21407:11266:18879/1‑151 (MQ=60)
GGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCC < NB501016:230:HFVJLAFXY:2:11212:11442:1113/151‑1 (MQ=60)
TACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCT > NB501016:230:HFVJLAFXY:1:11310:2669:14744/1‑151 (MQ=60)
TACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCG > NB501016:230:HFVJLAFXY:1:11106:18700:13903/1‑87 (MQ=60)
ACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTC > NB501016:230:HFVJLAFXY:3:21602:15335:19538/1‑130 (MQ=60)
ACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGG‑TTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTG < NB501016:230:HFVJLAFXY:1:21203:13048:2537/150‑1 (MQ=60)
CATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGG > NB501016:230:HFVJLAFXY:3:11602:16883:18744/1‑151 (MQ=60)
CATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTT < NB501016:230:HFVJLAFXY:3:21609:23893:11078/128‑1 (MQ=60)
ATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGC > NB501016:230:HFVJLAFXY:1:11310:23712:7011/1‑151 (MQ=60)
GATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCC < NB501016:230:HFVJLAFXY:3:21408:7857:6656/117‑1 (MQ=60)
CATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTT > NB501016:230:HFVJLAFXY:2:21307:14322:8054/1‑151 (MQ=60)
CATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTT > NB501016:230:HFVJLAFXY:2:11110:20907:6549/1‑151 (MQ=60)
CCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCT > NB501016:230:HFVJLAFXY:1:21207:3697:12688/1‑151 (MQ=60)
CTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCT > NB501016:230:HFVJLAFXY:2:21307:18702:16420/1‑150 (MQ=60)
CGTTCGCGCTACCGCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCT > NB501016:230:HFVJLAFXY:3:11409:16817:18921/1‑141 (MQ=60)
GCTATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCT > NB501016:230:HFVJLAFXY:1:11102:23730:12060/1‑151 (MQ=60)
ATCGTCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTG < NB501016:230:HFVJLAFXY:3:21601:24555:10786/149‑1 (MQ=60)
TCCTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGG > NB501016:230:HFVJLAFXY:3:21412:16376:11093/1‑151 (MQ=60)
CTGACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGT < NB501016:230:HFVJLAFXY:4:21509:22382:13392/91‑1 (MQ=60)
GACGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATG < NB501016:230:HFVJLAFXY:2:21103:4350:16622/151‑1 (MQ=60)
CGCTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTG < NB501016:230:HFVJLAFXY:3:11501:4614:4532/151‑1 (MQ=60)
CTCTAAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGGC > NB501016:230:HFVJLAFXY:1:11107:22583:3283/1‑151 (MQ=60)
AAATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGGCAGGT > NB501016:230:HFVJLAFXY:2:11304:19382:12912/1‑151 (MQ=60)
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CGCTCCGCCAAAATCTCCTTTGTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCGTATGGTAAGCAACGCCTCCGCATTAGGACGCAATGGCGTACATGATTTCATCCTCGTTCGCGCTACCGCTATCGTCCTGACGCTCTACATCATTTATATGGTCGGTTTTTTCGCTACCAGTGGCGAGCTGACATATGAAGTCTGGATCGGTTTCTTCGCCTCTGCGTTCACCAAAGTGTTCACCCTGCTGGCGCTGTTTTCTATCTTGATCCATGCCTGGATCGGCATGTGGCAGGT > NC_000913/755498‑755795
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
