Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F36 I1 R1
|
10 |
110.6 |
3657964 |
98.0% |
3584804 |
143.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,188,953 |
G→A |
E1202K (GAA→AAA) |
rpoC → |
RNA polymerase, beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,188,953 | 0 | G | A | 98.4%
| 419.1
/ ‑3.2
| 124 | E1202K (GAA→AAA) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (66/56); total (67/57) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 124 total aligned reads displayed.
GGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGA > NC_000913/4188808‑4189098
|
ggCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAAc > 3:151286/1‑149 (MQ=255)
ggCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAAc > 7:263729/1‑149 (MQ=255)
aaTCGTGGCTGAAATGAGCGGTTTCGTTTCCTTCGGTAAAGAAACCTAAGGTATAGGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTAGGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtg < 1:185181/149‑1 (MQ=255)
aaTCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGAGTCCGAAATGGCGGCCGCTCAACGGGGGCGAAGGTAACCgtg > 6:254343/1‑149 (MQ=255)
aTCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtgt < 5:218445/149‑1 (MQ=255)
aTCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtgt < 5:358525/149‑1 (MQ=255)
aTCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtg > 6:42895/1‑148 (MQ=255)
tCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTa < 6:97092/149‑1 (MQ=255)
cTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAg > 3:158202/1‑148 (MQ=255)
tGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGaa > 5:197098/1‑149 (MQ=255)
tGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGaa > 4:129360/1‑149 (MQ=255)
tGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCCCCCCGGTAGACAGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg > 1:363696/1‑149 (MQ=255)
tGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg > 2:324270/1‑149 (MQ=255)
gAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGGCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTGCGAAGGTAAACGTGTAGAACgtgg > 6:279204/1‑149 (MQ=255)
aaaTCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtggt > 8:241257/1‑149 (MQ=255)
aaaTCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg < 4:151286/147‑1 (MQ=255)
aaaTCAGCGGTAATGTTTCCTTCGGTAAATAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATACGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtgg < 2:78366/148‑1 (MQ=255)
tCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGATATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGAc > 1:359738/1‑149 (MQ=255)
ggaaTCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCACGGTAGACCGTAGCGATCCGTGCGAAGAGATGATTCCGAAATGGCTTCACATCAACGTGTTCTAAGGTAAAAGTCTAGAACGTGCTGAAGTaaa > 8:207196/4‑148 (MQ=255)
ggTATCGTTTCCGTCGGTAAAGAAACCAAAGGGTCACGTCGGCGGGTTATGTCCCCGGGAGCCGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTCTCGTAAt > 3:382285/1‑149 (MQ=255)
tCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTcc < 1:324270/149‑1 (MQ=255)
tCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTcc > 7:297858/1‑149 (MQ=255)
ttCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCGCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTcc > 6:315364/1‑149 (MQ=255)
ttCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTcc > 7:338647/1‑149 (MQ=255)
cGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTcc < 4:368982/147‑1 (MQ=255)
tAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAg > 4:284875/1‑149 (MQ=255)
tAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAg > 8:190240/1‑149 (MQ=255)
aCCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCa < 6:92688/149‑1 (MQ=255)
ccAAAGTTAAACGTCGTCTGGTTATCAACCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGCTGACGTAATTTCCGACGGTCAGGAAGCTCAGCAc > 7:456435/1‑149 (MQ=255)
cAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc > 7:344933/1‑148 (MQ=255)
cAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc > 5:279514/1‑148 (MQ=255)
aaGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACATGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCg > 7:325694/1‑134 (MQ=255)
aGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACa < 3:129360/149‑1 (MQ=255)
gTAAACGTCGTCTGGTTATCACCCGGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACAtt < 5:267620/149‑1 (MQ=255)
gTAAACGTCGTCTGGTTATCACCCCGGTCGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACAtt < 3:8955/149‑1 (MQ=255)
gTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACAtt < 3:2727/149‑1 (MQ=255)
aaaCGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACTAGGTGAACTAATTTACAAATATACGAAAGCGCCGCACGACATtct > 6:166976/1‑149 (MQ=255)
aaaCGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtct > 4:97686/1‑149 (MQ=255)
aCGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgc < 4:103019/149‑1 (MQ=255)
gtcgtcTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgcgt > 8:244037/1‑149 (MQ=255)
gtcTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgcgtct < 4:138884/148‑1 (MQ=255)
tcTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgcgtctgc > 7:34903/1‑149 (MQ=255)
tcTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgcgtctgc > 2:425768/1‑149 (MQ=255)
tGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTctgcgtctgcgt > 7:154419/1‑149 (MQ=255)
tGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTctgcgtctgcgt > 1:40224/1‑149 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtgg > 5:296672/1‑149 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtg < 1:28266/148‑1 (MQ=255)
ttATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtggt > 6:62299/1‑149 (MQ=255)
ttATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTACGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCAGGAAGCGCCGAACGACAGTCTGCGTCTGCgtggt > 6:419615/1‑149 (MQ=255)
tCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGgtgt < 3:97686/148‑1 (MQ=255)
tCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGgtgt < 6:125973/148‑1 (MQ=255)
aCCCGGGTAGACGGTAGCGATCGTTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCa < 4:382285/149‑1 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCa < 5:42895/149‑1 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATg > 8:396624/1‑149 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATg > 2:398198/1‑149 (MQ=255)
gTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGt < 4:158202/149‑1 (MQ=255)
cGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTc < 7:241257/149‑1 (MQ=255)
gTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGt < 5:257662/149‑1 (MQ=255)
tAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGtt < 6:197098/149‑1 (MQ=255)
gCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTa < 8:297858/148‑1 (MQ=255)
gCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTa > 2:115871/1‑148 (MQ=255)
gATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGATCTCGGTGATCTCCTTAACATAAAAAAAAAAAAGCCGCACGACATTATTCGTCTGCGTGGGGTTCATGCTGTTACTCGTTACAt > 4:435200/1‑149 (MQ=255)
tCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCg > 6:282133/1‑149 (MQ=255)
cGTACGAAGAGATGATTCCGAAATGGCGTCCGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGtt < 7:92005/149‑1 (MQ=255)
cGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGTGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGt < 4:4593/148‑1 (MQ=255)
tACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTaa < 7:190240/149‑1 (MQ=255)
aCGAAGAGATGATTCCGAAATGGCGTCAGCTCACCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGAAGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGGTAAc > 3:222005/1‑149 (MQ=255)
cgacgaGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc < 1:100319/148‑1 (MQ=255)
agAAGAGATGATTCCGAAATGGCGGCAGCTCACCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc < 5:279204/147‑1 (MQ=255)
gAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACTACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACg > 4:274574/1‑148 (MQ=255)
gAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGt < 7:437398/128‑1 (MQ=255)
aaGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACg > 5:129388/1‑147 (MQ=255)
atgatTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACa < 5:315364/149‑1 (MQ=255)
atTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGa < 2:23285/149‑1 (MQ=255)
ttCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGAc < 2:363696/149‑1 (MQ=255)
ccGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACg > 3:148418/1‑148 (MQ=255)
cGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTctgcgtctgcgt < 1:184508/101‑1 (MQ=255)
cGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGAAGGTCCGGAAGCGCCGCACGACATtctgagtctgctt > 2:184508/1‑99 (MQ=255)
aaTGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATAc < 2:401336/149‑1 (MQ=255)
aTGGCGTCAGCTCAACGTGGTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATAcc < 7:207196/149‑1 (MQ=255)
gCGTCAGCTCAAGGTGTTCGAATGTAAACGTGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTTGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGt < 8:344933/148‑1 (MQ=255)
gCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGt < 5:245629/148‑1 (MQ=255)
cGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCt < 1:445810/149‑1 (MQ=255)
tCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGCCGGTCCGGAAGCGCCGCACGCCATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTg > 5:364108/1‑148 (MQ=255)
tCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTg > 1:404764/1‑148 (MQ=255)
gCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAgg < 5:62299/149‑1 (MQ=255)
cTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAggg > 1:106871/1‑149 (MQ=255)
cTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAggg < 2:29169/149‑1 (MQ=255)
aaCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt > 8:389538/1‑149 (MQ=255)
aCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGtt < 8:34903/149‑1 (MQ=255)
aCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt > 6:247137/1‑148 (MQ=255)
tgtTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCTCAAGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGAAGGGCGtt > 3:57895/1‑146 (MQ=255)
gtTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAg < 3:116240/121‑1 (MQ=255)
ttCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGAt > 1:299038/1‑149 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTaa < 2:52706/115‑2 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTaa > 1:52706/1‑114 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGAGTCTTCGGGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTaa < 3:274574/149‑1 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGAAGTAATTTCCGAAAGAAAGTAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTaa > 4:97648/1‑149 (MQ=255)
aGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTc < 6:263151/92‑1 (MQ=255)
ggTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTCCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGa < 2:450431/149‑1 (MQ=255)
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GGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGA > NC_000913/4188808‑4189098
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAA > NC_000913/4188807‑4189101
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CGGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACG > NB501016:230:HFVJLAFXY:2:11302:4993:10181/1‑151 (MQ=60)
CGGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACG > NB501016:230:HFVJLAFXY:4:21404:20755:17529/1‑151 (MQ=60)
CAATCGTGGCTGAAATGAGCGGTTTCGTTTCCTTCGGTAAAGAAACCTAAGGTATAGGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTAGGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGT < NB501016:230:HFVJLAFXY:1:11305:3805:4639/151‑1 (MQ=60)
AATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTA < NB501016:230:HFVJLAFXY:3:21510:22785:9727/151‑1 (MQ=60)
AATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTA < NB501016:230:HFVJLAFXY:3:11611:6589:3793/151‑1 (MQ=60)
CCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGA > NB501016:230:HFVJLAFXY:2:11303:21865:12212/1‑150 (MQ=60)
CTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAAC > NB501016:230:HFVJLAFXY:3:11607:16547:18861/1‑151 (MQ=60)
CTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCCCCCCGGTAGACAGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGG > NB501016:230:HFVJLAFXY:1:21208:17886:11315/1‑151 (MQ=60)
GAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTG > NB501016:230:HFVJLAFXY:2:11206:15836:9414/1‑151 (MQ=60)
ATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGATATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACG > NB501016:230:HFVJLAFXY:1:21207:2498:17688/1‑151 (MQ=60)
CAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGGCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGCTTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGATCGTGGTGACGT > NB501016:230:HFVJLAFXY:2:21306:1153:4341/1‑150 (MQ=60)
CGGTATCGTTTCCGTCGGTAAAGAAACCAAAGGGTCACGTCGGCGGGTTATGTCCCCGGGAGCCGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTCTCGTAATT > NB501016:230:HFVJLAFXY:2:21304:16109:8019/1‑151 (MQ=60)
ATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCG > NB501016:230:HFVJLAFXY:4:21409:23795:19431/1‑151 (MQ=60)
ATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCG < NB501016:230:HFVJLAFXY:1:21202:16153:3601/151‑1 (MQ=60)
CTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCG > NB501016:230:HFVJLAFXY:4:21504:25570:14060/1‑151 (MQ=60)
CTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCG > NB501016:230:HFVJLAFXY:4:21410:16301:5124/1‑151 (MQ=60)
GGTAAAGAAACAAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTACCGATCCGTACGAAGAGATGATTCCGAAAAGGCGTCAGCTCAACGAGTTCGAAGGTAAACGAGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGA > NB501016:230:HFVJLAFXY:3:21610:8277:12995/1‑149 (MQ=60)
ACCAAAGTTAAACGTCGTCTGGTTATCAACCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGCTGACGTAATTTCCGACGGTCAGGAAGCtcagcact > NB501016:230:HFVJLAFXY:4:21611:2328:6609/1‑143 (MQ=60)
CCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACG > NB501016:230:HFVJLAFXY:3:21408:14040:19017/1‑150 (MQ=60)
CCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACG > NB501016:230:HFVJLAFXY:4:21505:11499:14065/1‑150 (MQ=60)
CAAAGGTAAACGTCGTCTGGTTATCACGCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGTCGTCAGCTCAACGTGTTCGAAGGTAAACGTTTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGAC < NB501016:230:HFVJLAFXY:2:11309:23577:2264/151‑1 (MQ=60)
AAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACATGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGG > NB501016:230:HFVJLAFXY:4:21502:10527:11269/1‑136 (MQ=60)
AAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACAT < NB501016:230:HFVJLAFXY:2:11210:4780:17436/151‑1 (MQ=60)
GGTAAACGTCGTCTGGTTATCACCCGGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTC < NB501016:230:HFVJLAFXY:3:21406:18137:19719/151‑1 (MQ=60)
GGTAAACGTCGTCTGGTTATCACCCCGGTCGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTC < NB501016:230:HFVJLAFXY:2:11102:26759:9586/151‑1 (MQ=60)
GGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTC < NB501016:230:HFVJLAFXY:2:11101:1281:9559/151‑1 (MQ=60)
GTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCG > NB501016:230:HFVJLAFXY:4:11406:9058:5275/1‑151 (MQ=60)
CTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTG > NB501016:230:HFVJLAFXY:4:11511:10812:13207/1‑151 (MQ=60)
CTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTG > NB501016:230:HFVJLAFXY:1:11106:2913:8939/1‑151 (MQ=60)
GGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGT > NB501016:230:HFVJLAFXY:3:21411:15070:12791/1‑151 (MQ=60)
GGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGT > NB501016:230:HFVJLAFXY:1:11104:24632:17022/1‑151 (MQ=60)
GGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGG < NB501016:230:HFVJLAFXY:1:11104:15267:14628/150‑1 (MQ=60)
ATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTT < NB501016:230:HFVJLAFXY:2:11205:6573:11394/150‑1 (MQ=60)
CACCCCGGTAGACGGTAGCGATCCGTACGAAGAGAGGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCAT < NB501016:230:HFVJLAFXY:3:11408:9497:1566/151‑1 (MQ=60)
AGACGGTAGCGATCCGTACGAAGAGATGATTCCGAACTGGCGTCAGCTCAACGTGTTCGAAGGTAAACGGGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTAC < NB501016:230:HFVJLAFXY:3:21611:3698:12371/150‑1 (MQ=60)
ACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCG < NB501016:230:HFVJLAFXY:1:11109:10034:7541/151‑1 (MQ=60)
ACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCG < NB501016:230:HFVJLAFXY:4:21401:25734:6712/151‑1 (MQ=60)
CGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGT < NB501016:230:HFVJLAFXY:4:21601:6324:15863/151‑1 (MQ=60)
GGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTT < NB501016:230:HFVJLAFXY:3:21405:17314:10032/151‑1 (MQ=60)
GTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTT > NB501016:230:HFVJLAFXY:1:21302:1783:13087/1‑150 (MQ=60)
CCGTACGAAGAGATGATTCCGAAATGGCGTCCGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTA < NB501016:230:HFVJLAFXY:4:11502:3943:3169/151‑1 (MQ=60)
GTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAC < NB501016:230:HFVJLAFXY:4:11605:9181:5250/151‑1 (MQ=60)
TACGAAGAGATGATTCCGAAATGGCGTCAGCTCACCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGAAGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGGTAACG > NB501016:230:HFVJLAFXY:2:21101:2803:3133/1‑151 (MQ=60)
caGAAGAGATGATTCCGAAATGGCGGCAGCTCACCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACG < NB501016:230:HFVJLAFXY:3:21408:1223:17930/148‑1 (MQ=60)
ACGACGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACG < NB501016:230:HFVJLAFXY:1:11203:17558:11003/150‑1 (MQ=60)
CGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTATTTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTT < NB501016:230:HFVJLAFXY:4:21608:7471:5253/130‑1 (MQ=60)
CGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGA > NB501016:230:HFVJLAFXY:3:11509:6717:2304/1‑150 (MQ=60)
GAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGA > NB501016:230:HFVJLAFXY:3:11509:12346:18349/1‑149 (MQ=60)
GATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAG < NB501016:230:HFVJLAFXY:3:21503:13711:12174/151‑1 (MQ=60)
TTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAAAGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGT > NB501016:230:HFVJLAFXY:3:21412:20804:4110/1‑151 (MQ=60)
TCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGT > NB501016:230:HFVJLAFXY:2:11302:4928:1328/1‑150 (MQ=60)
CCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTG < NB501016:230:HFVJLAFXY:1:11305:25224:2534/103‑1 (MQ=60)
CGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTA > NB501016:230:HFVJLAFXY:4:11605:16232:10374/1‑124 (MQ=60)
AATGGCGTCAGCTCAACGTGGTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCG < NB501016:230:HFVJLAFXY:4:11607:8627:18072/151‑1 (MQ=60)
GGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTC < NB501016:230:HFVJLAFXY:3:21403:7310:10931/150‑1 (MQ=60)
GCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTG < NB501016:230:HFVJLAFXY:1:21309:25142:13164/151‑1 (MQ=60)
GTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGCCGGTCCGGAAGCGCCGCACGCCATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGC > NB501016:230:HFVJLAFXY:3:21511:24052:8339/1‑150 (MQ=60)
GTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGC > NB501016:230:HFVJLAFXY:1:21303:7825:4692/1‑150 (MQ=60)
AGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGG < NB501016:230:HFVJLAFXY:3:11411:14498:3803/151‑1 (MQ=60)
GCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGC > NB501016:230:HFVJLAFXY:1:11204:20994:12049/1‑151 (MQ=60)
GTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCTCAAGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGAAGGGCGTTA > NB501016:230:HFVJLAFXY:2:11110:1895:15242/1‑148 (MQ=60)
GTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGA < NB501016:230:HFVJLAFXY:2:11308:22065:11758/151‑1 (MQ=60)
TGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGG < NB501016:230:HFVJLAFXY:2:11208:5991:13733/123‑1 (MQ=60)
GTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATT > NB501016:230:HFVJLAFXY:1:21110:16149:3768/1‑151 (MQ=60)
CGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTAac > NB501016:230:HFVJLAFXY:1:11108:22167:5461/1‑115 (MQ=60)
CGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGAGTCTTCGGGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAC < NB501016:230:HFVJLAFXY:2:21110:21473:1328/151‑1 (MQ=60)
AAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCG > NB501016:230:HFVJLAFXY:3:21406:14662:6829/1‑94 (MQ=60)
GTAAACTTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAA < NB501016:230:HFVJLAFXY:3:21404:11634:18880/151‑1 (MQ=60)
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CGGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACGATAA > NC_000913/4188807‑4189101
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
