Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F36 I0 R1
|
141 |
81.4 |
2739672 |
97.2% |
2662961 |
142.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,188,953 |
G→A |
100% |
E1202K (GAA→AAA) |
rpoC → |
RNA polymerase, beta prime subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,188,953 | 0 | G | A | 100.0%
| 346.8
/ NA
| 99 | E1202K (GAA→AAA) | rpoC | RNA polymerase, beta prime subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (51/48); total (51/48) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAC > NC_000913/4188808‑4189096
|
ggCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAAc < 4:103825/149‑1 (MQ=255)
aTCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtgt < 4:242895/149‑1 (MQ=255)
tCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtg > 8:136509/1‑147 (MQ=255)
tCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTa < 1:43762/149‑1 (MQ=255)
tCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAAACAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTa < 6:279521/149‑1 (MQ=255)
cTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGGCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGCTGAATCCGAAATGGCGTCAGCTCAACGTGTTCTAAGGTAAACGTGTAGa > 8:173446/1‑149 (MQ=255)
gCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAAc < 4:297764/148‑1 (MQ=255)
tGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg > 7:231616/1‑149 (MQ=255)
tGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg > 5:43916/1‑149 (MQ=255)
aaaTCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgtg < 2:261311/147‑1 (MQ=255)
aaTCCGCGGTATCGTTTCATTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCTGTAAACGGTATAGATCCTTACGAAGAGATGATTCCGAAATGGCGTCAGATCAACGTGTTCGAACGTAAACCTGTATAAActggt > 2:348528/1‑148 (MQ=255)
aTCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGa > 5:253761/1‑149 (MQ=255)
gTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgt < 5:148809/132‑1 (MQ=255)
gTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACgt > 6:148809/1‑132 (MQ=255)
gTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGa > 3:327322/1‑149 (MQ=255)
ttCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTcc > 5:315103/1‑149 (MQ=255)
ttCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTcc > 2:211527/1‑149 (MQ=255)
aaGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACTAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAgc < 8:231616/148‑1 (MQ=255)
aaGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAgcg > 6:146098/1‑149 (MQ=255)
aGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTAAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTATTTTCCGACGGTCCGGAAgcgc > 1:300836/1‑149 (MQ=255)
gAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAAAGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGcgcc > 1:297536/1‑149 (MQ=255)
aCCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCa > 5:290534/1‑149 (MQ=255)
aaCGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtct < 1:211527/148‑1 (MQ=255)
aCGTCGTCTGGTTATCACCCCTGTAGACGGTAGCGATCCGTACGTATAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCTCCGCACGACATtctgc < 4:327322/149‑1 (MQ=255)
aCGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgc < 7:25377/149‑1 (MQ=255)
gtcTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgcgtct < 8:8797/148‑1 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGAc > 1:260610/1‑99 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGAc < 2:260610/99‑1 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtgg > 7:209387/1‑149 (MQ=255)
gTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAACGTAAACGTGTAGAACTAGGTGACCTAATTAACAACATAAAATAAGCGCACCACGACATACTGCGTCTGCgtgt > 6:134768/1‑148 (MQ=255)
tCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGtt < 6:43916/149‑1 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtg < 5:6350/79‑1 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACgtg > 6:6350/1‑79 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgc > 6:12338/1‑133 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtctgc < 5:12338/133‑1 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCa < 6:42481/149‑1 (MQ=255)
aCCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCa > 2:196978/1‑149 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc < 4:173263/122‑1 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc > 3:173263/1‑122 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtggt < 1:313991/143‑1 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCgtggt > 2:313991/1‑143 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCAt < 6:315103/149‑1 (MQ=255)
ccccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCAt > 5:34057/1‑149 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGTTCGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATg < 2:260350/149‑1 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACTAGGTGAACTAATTAACAAAAAAAAAAAAACGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATg > 2:12725/1‑149 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtct > 8:96915/1‑129 (MQ=255)
cccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATtct < 7:96915/129‑1 (MQ=255)
ccGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGc > 7:118197/1‑149 (MQ=255)
cGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCt < 6:290534/149‑1 (MQ=255)
gACGGTAGCGATCCTTACGAAGATATGATTCCGAAATGGCGTCAGCTGAACGTGTTCGAAGGTACAGGGGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTa < 1:348528/148‑1 (MQ=255)
aCGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACt < 7:136509/149‑1 (MQ=255)
cGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGAGGTAATTTACGACGATACGGAAGCGCCGCACGACAATATGCTTCTGCGTGGTGTTGATGCTGTTACTCGTTAc > 2:325956/1‑148 (MQ=255)
cGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc < 7:157094/106‑1 (MQ=255)
cGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCAc > 8:157094/1‑106 (MQ=255)
cGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACa > 2:321134/1‑149 (MQ=255)
gATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCATACGTTAAGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTAGTTACAt > 8:169913/1‑149 (MQ=255)
aTCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATc > 2:203481/1‑149 (MQ=255)
aTCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATc > 7:55547/1‑149 (MQ=255)
cGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGtt < 8:145278/149‑1 (MQ=255)
gTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCTCCGCAAGACATTCTGAGTGTGCGTTGTGTTCATGCTGtt > 8:239556/1‑133 (MQ=255)
gTACGAAGAGATGATACCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTTACGTAATTTCCGACGGTCCGTAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGtt < 7:239556/133‑1 (MQ=255)
cGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCTCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc < 4:161809/148‑1 (MQ=255)
cGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc > 8:251680/1‑148 (MQ=255)
gAAGAGATGATTCCGAAATGGCGTCAGCTCGACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACg > 7:197548/1‑148 (MQ=255)
aaGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGaa < 8:209387/149‑1 (MQ=255)
agagATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAg < 6:253761/149‑1 (MQ=255)
agagATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAg < 6:34057/149‑1 (MQ=255)
agaTGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGAc < 8:12380/95‑1 (MQ=255)
gatgatTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTa > 8:210829/1‑148 (MQ=255)
atgatTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACa < 5:146098/149‑1 (MQ=255)
atgatTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACa < 1:296240/149‑1 (MQ=255)
tgatTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAg < 7:225691/149‑1 (MQ=255)
tCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCt < 8:54770/115‑1 (MQ=255)
tCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCt > 7:54770/1‑115 (MQ=255)
tCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACg > 8:248085/1‑149 (MQ=255)
tCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACg > 5:177813/1‑149 (MQ=255)
ccGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACg < 7:8628/148‑1 (MQ=255)
cGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGta < 7:210829/149‑1 (MQ=255)
gAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGtat < 7:251680/149‑1 (MQ=255)
gAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGta > 5:315214/1‑148 (MQ=255)
gCGTCAGCGCAACGTGTTCGAAGGTAAACGTGTAGATCGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTTGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGt < 2:297536/148‑1 (MQ=255)
tCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc > 3:309023/1‑124 (MQ=255)
tCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAAc < 4:309023/124‑1 (MQ=255)
aGCTCTACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTACGACGGTCCGGAAGCGCCGCACGACATTCTGAGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCa < 1:325956/148‑1 (MQ=255)
aGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCa < 1:321134/148‑1 (MQ=255)
gCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAgg > 2:36353/1‑149 (MQ=255)
tCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGc > 1:306450/1‑149 (MQ=255)
aaCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt > 4:51759/1‑149 (MQ=255)
aaCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt > 5:71634/1‑149 (MQ=255)
aaCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGGGGTGGTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt < 7:173446/149‑1 (MQ=255)
aCGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGt > 7:147469/1‑148 (MQ=255)
ttCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGa < 1:196978/148‑1 (MQ=255)
ttCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGAt > 5:256280/1‑149 (MQ=255)
cGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGAt > 8:329333/1‑147 (MQ=255)
gAAGGTAAACGTGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGAACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTaa < 5:134768/149‑1 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTaa > 3:96245/1‑149 (MQ=255)
gAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTaa < 2:300836/149‑1 (MQ=255)
aaGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAc > 7:70584/1‑149 (MQ=255)
aGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAc > 8:174758/1‑148 (MQ=255)
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GGCAATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAC > NC_000913/4188808‑4189096
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACG > NC_000913/4188812‑4189097
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ATCCTGGCTTAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAG < NB501016:230:HFVJLAFXY:1:11109:12120:3861/151‑1 (MQ=60)
CTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGG > NB501016:230:HFVJLAFXY:3:11410:14579:12822/1‑151 (MQ=60)
CTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGG > NB501016:230:HFVJLAFXY:4:21411:18955:16303/1‑151 (MQ=60)
AATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGAC > NB501016:230:HFVJLAFXY:3:21507:19938:10848/1‑151 (MQ=60)
CGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGAC > NB501016:230:HFVJLAFXY:2:21312:21094:12104/1‑151 (MQ=60)
CGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGAC < NB501016:230:HFVJLAFXY:2:11303:13854:19968/151‑1 (MQ=60)
CGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTG < NB501016:230:HFVJLAFXY:3:11608:9535:6302/134‑1 (MQ=60)
CTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCG > NB501016:230:HFVJLAFXY:3:21608:12466:2145/1‑151 (MQ=60)
AAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTAAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTATTTTCCGACGGTCCGGAAGCGCC > NB501016:230:HFVJLAFXY:1:21302:23516:8884/1‑151 (MQ=60)
AGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAAAGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCG > NB501016:230:HFVJLAFXY:1:21301:16683:14600/1‑151 (MQ=60)
AACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTTATTTCCGACGGTCCGGAAGCGCCGCAC > NB501016:230:HFVJLAFXY:3:21603:6154:5904/1‑151 (MQ=60)
CCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTACGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGAC > NB501016:230:HFVJLAFXY:3:21404:2992:1144/1‑131 (MQ=60)
AAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTG < NB501016:230:HFVJLAFXY:1:21107:21774:12521/150‑1 (MQ=60)
AACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCG < NB501016:230:HFVJLAFXY:4:11406:24640:5102/151‑1 (MQ=60)
GGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGT > NB501016:230:HFVJLAFXY:4:21407:23086:8851/1‑151 (MQ=60)
GGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGGGGTGACG > NB501016:230:HFVJLAFXY:1:21205:2975:15347/1‑101 (MQ=60)
CACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCG < NB501016:230:HFVJLAFXY:3:11403:14235:13467/135‑1 (MQ=60)
CACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGT < NB501016:230:HFVJLAFXY:3:11402:11205:7892/81‑1 (MQ=60)
ACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTG < NB501016:230:HFVJLAFXY:1:21305:9121:3493/145‑1 (MQ=60)
ACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACG > NB501016:230:HFVJLAFXY:2:21102:18500:13464/1‑124 (MQ=60)
ACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGGGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATG > NB501016:230:HFVJLAFXY:3:11408:24507:10887/1‑151 (MQ=60)
CCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTG < NB501016:230:HFVJLAFXY:4:11508:11214:5530/131‑1 (MQ=60)
CCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCT > NB501016:230:HFVJLAFXY:4:11512:18443:10406/1‑151 (MQ=60)
AGACGGTAGCGATCCTTACGAAGATATGATTCCGAAATGGCGTCAGCTGAACGTGTTCGAAGGTACAGGGGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTAC < NB501016:230:HFVJLAFXY:1:21312:10114:7493/150‑1 (MQ=60)
GACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTC < NB501016:230:HFVJLAFXY:4:11604:21056:4321/151‑1 (MQ=60)
GCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACG < NB501016:230:HFVJLAFXY:4:11608:24400:9784/108‑1 (MQ=60)
CGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTA > NB501016:230:HFVJLAFXY:2:11212:11423:16689/1‑56 (MQ=60)
GATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCG > NB501016:230:HFVJLAFXY:4:11411:3424:19110/1‑151 (MQ=60)
CGTACGAAGAGATGATACCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTTACGTAATTTCCGACGGTCCGTAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTA < NB501016:230:HFVJLAFXY:4:21501:26830:16652/135‑1 (MQ=60)
CGAAGAGATGATTCCGAAATGGCGTCAGCTCGACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGA > NB501016:230:HFVJLAFXY:4:21405:23178:1338/1‑150 (MQ=60)
GAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACAagatcggaagagcaccgtctgaactccagtcactctcgcgatctcgtatgccgt > NB501016:230:HFVJLAFXY:4:11403:22593:12249/1‑97 (MQ=60)
GATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAG < NB501016:230:HFVJLAFXY:3:11607:2195:14787/151‑1 (MQ=60)
GATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAG < NB501016:230:HFVJLAFXY:1:21301:10612:9512/151‑1 (MQ=60)
ATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGG < NB501016:230:HFVJLAFXY:4:21410:25971:13602/151‑1 (MQ=60)
TTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGT > NB501016:230:HFVJLAFXY:3:21402:24480:6893/1‑151 (MQ=60)
TTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTG > NB501016:230:HFVJLAFXY:4:11411:16496:16338/1‑117 (MQ=60)
TCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGT < NB501016:230:HFVJLAFXY:4:11402:26477:16600/150‑1 (MQ=60)
CCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTAT < NB501016:230:HFVJLAFXY:4:21407:22428:14298/151‑1 (MQ=60)
CGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATA < NB501016:230:HFVJLAFXY:4:21504:4269:13587/151‑1 (MQ=60)
CGAAATGGCGTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTAT > NB501016:230:HFVJLAFXY:3:21608:17209:2614/1‑150 (MQ=60)
GTCAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACG > NB501016:230:HFVJLAFXY:2:21308:20129:17860/1‑126 (MQ=60)
CAGCTCTACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTACGACGGTCCGGAAGCGCCGCACGACATTCTGAGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAG < NB501016:230:HFVJLAFXY:1:21307:26713:12873/150‑1 (MQ=60)
CAGCTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAG < NB501016:230:HFVJLAFXY:1:21306:1119:12883/150‑1 (MQ=60)
CTCAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCG > NB501016:230:HFVJLAFXY:1:21303:16957:11901/1‑151 (MQ=60)
CAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTT > NB501016:230:HFVJLAFXY:3:11504:17013:9744/1‑151 (MQ=60)
CAACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGGGGTGGTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTT < NB501016:230:HFVJLAFXY:4:11611:3066:17458/151‑1 (MQ=60)
AACGTGTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTT > NB501016:230:HFVJLAFXY:4:11606:9824:9557/1‑150 (MQ=60)
GTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATT > NB501016:230:HFVJLAFXY:3:21508:17979:2450/1‑151 (MQ=60)
GTTCGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGAT < NB501016:230:HFVJLAFXY:1:21104:4406:15451/150‑1 (MQ=60)
CGAAGGTAAACGTGTAGAACGTTGTGACGTAATTTCCGACGGTCCGGAAGCGCCGAACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAC < NB501016:230:HFVJLAFXY:3:11605:5252:10700/151‑1 (MQ=60)
CGAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAAC > NB501016:230:HFVJLAFXY:2:11210:19339:15411/1‑151 (MQ=60)
GAAGGTAACCGTGTAGAACGGGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACG < NB501016:230:HFVJLAFXY:3:11508:2970:5972/151‑1 (MQ=60)
GAAGGTAAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACG > NB501016:230:HFVJLAFXY:4:11502:24143:17502/1‑151 (MQ=60)
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ATCCTGGCTGAAATCAGCGGTATCGTTTCCTTCGGTAAAGAAACCAAAGGTAAACGTCGTCTGGTTATCACCCCGGTAGACGGTAGCGATCCGTACGAAGAGATGATTCCGAAATGGCGTCAGCTCAACGTGTTCGAAGGTGAACGTGTAGAACGTGGTGACGTAATTTCCGACGGTCCGGAAGCGCCGCACGACATTCTGCGTCTGCGTGGTGTTCATGCTGTTACTCGTTACATCGTTAACGAAGTACAGGACGTATACCGTCTGCAGGGCGTTAAGATTAACG > NC_000913/4188812‑4189097
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
