Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F36 I1 R1 10 110.6 3657964 98.0% 3584804 143.9

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGACGTTTAATGCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCGGAATATCACCCGGCATT  >  NC_000913/661808‑662102
                                                                                                                                                    |                                                                                                                                                  
ATTGACGTTTAATGCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTT                                                                                                                                                  <  NB501016:230:HFVJLAFXY:2:11109:15318:15825/151‑1 (MQ=60)
     CGTTTAATGCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTC                                                                                                                                             >  NB501016:230:HFVJLAFXY:2:21111:19271:4652/1‑151 (MQ=60)
        TTAATGCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAG                                                                                                                                          <  NB501016:230:HFVJLAFXY:2:11201:3583:17923/150‑1 (MQ=60)
             GCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGG                                                                                                                                     <  NB501016:230:HFVJLAFXY:4:11605:4651:12633/150‑1 (MQ=60)
                   CCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACC                                                                                                                                >  NB501016:230:HFVJLAFXY:1:21112:8070:5806/1‑150 (MQ=60)
                   CCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAG                                                                                                                              <  NB501016:230:HFVJLAFXY:2:21205:21108:9741/151‑1 (MQ=60)
                                               GTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTC                                                                                                  >  NB501016:230:HFVJLAFXY:3:21402:1811:15819/1‑151 (MQ=60)
                                                  AACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGG                                                                                               <  NB501016:230:HFVJLAFXY:4:21401:4400:12534/151‑1 (MQ=60)
                                                          GAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGC                                                                                         <  NB501016:230:HFVJLAFXY:3:21404:8138:5628/150‑1 (MQ=60)
                                                           AGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAAC                                                                                      >  NB501016:230:HFVJLAFXY:2:11306:17167:15327/1‑151 (MQ=60)
                                                                ATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATA                                                                                 <  NB501016:230:HFVJLAFXY:2:11110:2188:11465/151‑1 (MQ=60)
                                                                    TCTTTTCCCCAACATAGACACCTGTCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACA                                                                               <  NB501016:230:HFVJLAFXY:1:11209:1283:7569/150‑1 (MQ=60)
                                                                     CTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATC                                                                             >  NB501016:230:HFVJLAFXY:4:21506:20138:12757/1‑150 (MQ=60)
                                                                           CCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTT                                                                      >  NB501016:230:HFVJLAFXY:4:11412:12926:4476/1‑151 (MQ=60)
                                                                            CCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGTGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTT                                                                                             <  NB501016:230:HFVJLAFXY:1:21203:3361:9968/127‑1 (MQ=60)
                                                                                 ATAGACACCTGGCGCGTCAGCCCGAGGCTGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTATACGGCGTTTCAGGTTAAGCAACACCTACATCACCGGTTGCCCC                                                                 >  NB501016:230:HFVJLAFXY:1:11301:1952:16983/1‑151 (MQ=60)
                                                                                 ATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCG                                                                >  NB501016:230:HFVJLAFXY:1:21201:19318:4041/1‑151 (MQ=60)
                                                                                   AGACACCTGGCGCGGCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTTCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGG                                                               <  NB501016:230:HFVJLAFXY:1:11101:8001:5312/150‑1 (MQ=60)
                                                                                    GACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGC                                                              <  NB501016:230:HFVJLAFXY:2:11203:5673:6637/151‑1 (MQ=60)
                                                                                    GACACCTGGCGCGGCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAACAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCC                                                             <  NB501016:230:HFVJLAFXY:1:21304:13268:1316/151‑1 (MQ=60)
                                                                                             CGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATA                                                      >  NB501016:230:HFVJLAFXY:3:11611:5769:15707/1‑150 (MQ=60)
                                                                                              GCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTTCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGT                                                   <  NB501016:230:HFVJLAFXY:3:11508:19199:15550/151‑1 (MQ=60)
                                                                                                GTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCA                                                 <  NB501016:230:HFVJLAFXY:3:11404:13932:17086/151‑1 (MQ=60)
                                                                                                    GCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCT                                              >  NB501016:230:HFVJLAFXY:1:11208:10842:18261/1‑151 (MQ=60)
                                                                                                       CGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCC                                           >  NB501016:230:HFVJLAFXY:1:21206:12540:2329/1‑151 (MQ=60)
                                                                                                       CGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACA                                                                                     >  NB501016:230:HFVJLAFXY:1:11112:22544:7403/1‑109 (MQ=60)
                                                                                                                   TCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGC                               >  NB501016:230:HFVJLAFXY:3:21411:12761:15035/1‑151 (MQ=60)
                                                                                                                         CCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCACCACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCGCTGGAT                        >  NB501016:230:HFVJLAFXY:3:11504:11896:6109/1‑151 (MQ=60)
                                                                                                                         CCCAGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGAT                        >  NB501016:230:HFVJLAFXY:2:11201:19557:1676/1‑151 (MQ=60)
                                                                                                                            AGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCA                                                                                        >  NB501016:230:HFVJLAFXY:1:11209:5523:18873/1‑85 (MQ=60)
                                                                                                                            AGTTCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCAC                     >  NB501016:230:HFVJLAFXY:3:11412:14934:6184/1‑151 (MQ=60)
                                                                                                                               TCAGCCAGGGTATTCACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCG                   <  NB501016:230:HFVJLAFXY:4:11602:9813:15186/150‑1 (MQ=60)
                                                                                                                                             CACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCGGAATATCACCCGGC     >  NB501016:230:HFVJLAFXY:2:21101:14753:14818/1‑151 (MQ=60)
                                                                                                                                              ACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCGGAATATCACCCGGC     >  NB501016:230:HFVJLAFXY:3:21510:19037:11446/1‑150 (MQ=60)
                                                                                                                                              ACCACT‑TTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATC                       <  NB501016:230:HFVJLAFXY:1:11304:13556:9374/131‑1 (MQ=60)
                                                                                                                                                CACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCGGAATATCACCCGGCATT  >  NB501016:230:HFVJLAFXY:4:21401:11878:4310/1‑151 (MQ=60)
                                                                                                                                                    |                                                                                                                                                  
ATTGACGTTTAATGCCAGACCGTGGAATGAACAACCGCGTCGAATACGTAAACCCAGTGAGCAAATTTTCTTTTCCCCAACATAGACACCTGGCGCGTCAGCCCGAGGATGCGCTTCTATACCCAGTTCAGCCAGGGTATTCACCACTGTTTGCTCAAGCAAGGTCACCAGTTCACGCACACCGAGTTTACGGCGTTTCAGGTTAAGCAACACATACATCACCTGTTGCCCCGGCCCGTGATAAGTCACCTGCCCACCGCGATCGCTCTGGATCACCGGAATATCACCCGGCATT  >  NC_000913/661808‑662102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑