Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F11 I1 R1
|
15 |
43.1 |
1622188 |
96.5% |
1565411 |
127.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,559,357 |
Δ1,629 bp |
|
[rtcR]–[glpG] |
[rtcR], glpR, glpR, [glpG] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3559357 |
3560985 |
1629 |
48 [1] |
[0] 48 |
[rtcR]–[glpG] |
[rtcR],glpR,glpR,[glpG] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3559356 | 1 (0.020) | 45 (1.100) |
35/244 |
0.3 |
98.9% |
coding (1089/1599 nt) |
rtcR |
sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 |
3560986 = |
0 (0.000) | coding (467/831 nt) |
glpG |
rhomboid intramembrane serine protease |
GATK/CNVnator alignment
N/A
