Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F73 I0 R1
|
132 |
75.9 |
2634066 |
97.4% |
2565580 |
143.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,559,357 |
Δ1,629 bp |
100% |
|
[rtcR]–[glpG] |
[rtcR], glpR, glpR, [glpG] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3559357 |
3560985 |
1629 |
102 [0] |
[1] 103 |
[rtcR]–[glpG] |
[rtcR],glpR,glpR,[glpG] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3559356 | 0 (0.000) | 93 (1.310) |
75/258 |
NT |
99.5% |
coding (1089/1599 nt) |
rtcR |
sigma 54‑dependent transcriptional regulator of rtcBA expression |
| ? | NC_000913 |
3560986 = |
1 (0.010) | coding (467/831 nt) |
glpG |
rhomboid intramembrane serine protease |
GATK/CNVnator alignment
N/A
