mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 50,588 | G→A | 6.3% | A212V (GCG→GTG) | apaH ← | diadenosine tetraphosphatase |
| RA | 112,082 | T→C | 7.0% | D173G (GAT→GGT) | zapD ← | FtsZ stabilizer |
| RA | 214,739 | T→C | 5.7% | M150T (ATG→ACG) | yaeQ → | PDDEXK superfamily protein |
| MC JC | 257,908 | Δ776 bp | 100% | [crl] | [crl] | |
| RA | 299,644 | C→G | 5.6% | V431L (GTC→CTC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 299,739 | C→T | 5.4% | R399H (CGT→CAT) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| RA | 309,846 | G→A | 6.3% | P61S (CCG→TCG) | ecpB ← | ECP production pilus chaperone |
| RA | 340,050 | G→T | 7.1% | intergenic (+307/‑115) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 340,051 | A→C | 7.0% | intergenic (+308/‑114) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 340,057 | T→G | 6.1% | intergenic (+314/‑108) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 340,058 | T→C | 6.2% | intergenic (+315/‑107) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 353,717 | C→G | 6.1% | R338G (CGC→GGC) | prpE → | propionate‑‑CoA ligase |
| RA | 396,037 | C→T | 8.0% | R84H (CGT→CAT) | ampH ← | D‑alanyl‑D‑alanine‑ carboxypeptidase/endopeptidase; penicillin‑binding protein; weak beta‑lactamase |
| RA | 404,513 | C→A | 5.7% | L271I (CTT→ATT) | yaiC → | diguanylate cyclase, cellulose regualtor |
| RA | 423,329 | A→G | 6.8% | H271R (CAC→CGC) | malZ → | maltodextrin glucosidase |
| RA | 488,165 | G→A | 5.8% | D544N (GAC→AAC) | mscK → | mechanosensitive channel protein, intermediate conductance, K+ regulated |
| RA | 569,160 | G→T | 5.4% | D87Y (GAC→TAC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 569,161 | A→C | 5.6% | D87A (GAC→GCC) ‡ | ybcK → | DLP12 prophage; putative recombinase |
| RA | 594,606 | G→A | 8.2% | S55S (AGC→AGT) | cusS ← | copper‑sensing histidine kinase in two‑component regulatory system with CusR |
| RA | 696,410 | C→T | 5.5% | intergenic (+134/+20) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,412 | A→C | 5.1% | intergenic (+136/+18) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 696,413 | A→G | 5.5% | intergenic (+137/+17) | ubiF → / ← glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| RA | 698,669 | C→T | 8.3% | R170H (CGC→CAC) | asnB ← | asparagine synthetase B |
| RA | 703,478 | G→A | 6.5% | P45L (CCG→CTG) | nagB ← | glucosamine‑6‑phosphate deaminase |
| RA | 800,044 | C→T | 6.1% | A178T (GCC→ACC) | ybhD ← | putative DNA‑binding transcriptional regulator |
| RA | 843,652 | G→A | 8.4% | P610L (CCG→CTG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 855,411 | Δ1 bp | 6.9% | coding (334/921 nt) | ldtB ← | L,D‑transpeptidase linking Lpp to murein |
| RA | 864,299 | A→G | 7.1% | I220V (ATT→GTT) | fsaA → | fructose‑6‑phosphate aldolase 1 |
| RA | 874,830 | T→A | 5.7% | F618I (TTC→ATC) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 880,887 | C→T | 5.6% | A54V (GCA→GTA) | dacC → | D‑alanyl‑D‑alanine carboxypeptidase; penicillin‑binding protein 6a |
| RA | 895,325 | T→C | 5.1% | I112T (ATC→ACC) | potG → | putrescine ABC transporter ATPase |
| RA | 939,974 | C→T | 9.5% | L183L (CTG→TTG) | serS → | seryl‑tRNA synthetase |
| RA | 952,191 | A→G | 6.0% | L455P (CTG→CCG) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 1,001,174 | C→T | 5.9% | S653S (AGC→AGT) | elfC → | putative outer membrane fimbrial subunit export usher protein |
| RA | 1,003,952 | T→C | 5.5% | *172Q (TAA→CAA) T2T (ACT→ACC) |
ycbV → ycbF → |
putative fimbrial‑like adhesin protein putative periplasmic pilin chaperone |
| RA | 1,085,098 | C→T | 5.4% | P36L (CCT→CTT) | phoH → | ATP‑binding protein; putative PhoH family P‑loop ATPase |
| RA | 1,108,414 | C→T | 10.8% | M176I (ATG→ATA) | opgC ← | OPG biosynthetic transmembrane succinyltransferase |
| RA | 1,111,785 | G→A | 7.7% | G308D (GGC→GAC) | opgH → | OPG biosynthetic ACP‑dependent transmembrane UDP‑glucose beta‑1,2 glycosyltransferase; nutrient‑dependent cell size regulator, FtsZ assembly antagonist |
| RA | 1,131,440 | G→A | 5.0% | M1M (ATG→ATA) † | flgC → | flagellar component of cell‑proximal portion of basal‑body rod |
| RA | 1,155,647 | T→A | 7.7% | L175Q (CTG→CAG) | tmk → | thymidylate kinase |
| RA | 1,253,896 | C→T | 6.0% | R686Q (CGA→CAA) | ycgV ← | putative adhesin |
| RA | 1,286,983 | A→G | 14.8% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| JC JC | 1,293,032 | IS1 (–) +8 bp | 100% | intergenic (‑110/‑488) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,298,029 | T→C | 5.4% | V31V (GTA→GTG) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| MC JC | 1,299,499 | Δ1,199 bp | 100% | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,328,762 | C→T | 7.8% | W117* (TGG→TGA) | yciK ← | putative EmrKY‑TolC system oxoacyl‑(acyl carrier protein) reductase |
| RA | 1,364,196 | A→G | 9.1% | E485G (GAA→GGA) | puuC → | gamma‑glutamyl‑gamma‑aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase |
| RA | 1,367,341 | T→A | 8.0% | E191V (GAA→GTA) | pspF ← | psp operon transcriptional activator |
| RA | 1,372,334 | T→C | 8.5% | P142P (CCT→CCC) | ycjN → | putative ABC sugar transporter periplasmic binding protein |
| RA | 1,384,851 | G→A | 7.7% | A245A (GCG→GCA) | ycjX → | DUF463 family protein, puatative P‑loop NTPase |
| RA | 1,398,145 | C→T | 7.1% | V160M (GTG→ATG) | uspE ← | stress‑induced protein |
| RA | 1,401,040 | C→T | 11.7% | G245E (GGA→GAA) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,425,743 | Δ1 bp | 5.8% | pseudogene (114/453 nt) | ydaY → | pseudogene, Rac prophage;Phage or Prophage Related |
| RA | 1,425,744 | Δ1 bp | 5.8% | pseudogene (115/453 nt) | ydaY → | pseudogene, Rac prophage;Phage or Prophage Related |
| RA | 1,444,337 | C→T | 10.2% | D429D (GAC→GAT) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,453,278 | G→A | 8.7% | T122M (ACG→ATG) | paaZ ← | oxepin‑CoA hydrolase and 3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,456,664 | C→T | 8.9% | R79C (CGT→TGT) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,456,682 | C→A | 9.3% | R85S (CGC→AGC) | paaE → | ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component |
| RA | 1,595,156 | T→C | 18.2% | pseudogene (2832/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,678,456 | G→A | 6.4% | S10S (TCG→TCA) | ydgH → | DUF1471 family periplasmic protein |
| RA | 1,806,340 | C→T | 100% | intergenic (‑257/‑30) | ydiY ← / → pfkB | acid‑inducible putative outer membrane protein/6‑phosphofructokinase II |
| RA | 1,806,446 | G→A | 66.7% | G26E (GGA→GAA) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,806,971 | A→G | 8.3% | Q201R (CAG→CGG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,807,102 | C→T | 33.3% | P245S (CCG→TCG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,862,926 | C→G | 7.8% | G52G (GGC→GGG) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,865,682 | G→C | 6.6% | intergenic (‑46/+44) | yeaE ← / ← mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| RA | 1,895,485 | G→C | 6.5% | W227C (TGG→TGC) | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,895,487 | A→T | 6.7% | Q228L (CAG→CTG) | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,895,489 | G→C | 6.7% | A229P (GCA→CCA) | pabB → | aminodeoxychorismate synthase, subunit I |
| RA | 1,976,324 | C→T | 6.9% | S272S (TCG→TCA) | motA ← | proton conductor component of flagella motor |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB1–insA | insB1, insA | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| RA | 1,982,585 | C→A | 6.8% | R319L (CGT→CTT) | araH ← | L‑arabinose ABC transporter permease |
| RA | 2,014,548 | A→G | 9.3% | P440P (CCA→CCG) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,030,732 | T→C | 6.8% | T63A (ACC→GCC) | vsr ← | DNA mismatch endonuclease of very short patch repair |
| RA | 2,049,040 | C→T | 7.2% | T1368I (ACA→ATA) | yeeJ → | putative adhesin |
| RA | 2,094,624 | C→T | 9.3% | S30S (AGC→AGT) | hisH → | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit |
| RA | 2,096,628 | A→G | 5.9% | Q5Q (CAA→CAG) | hisI → | phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase |
| RA | 2,126,946 | T→C | 6.8% | Q82R (CAG→CGG) | wcaG ← | bifunctional GDP‑fucose synthetase: GDP‑4‑dehydro‑6‑deoxy‑D‑mannose epimerase/ GDP‑4‑dehydro‑6‑L‑deoxygalactose reductase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative glycosyl transferase |
| RA | 2,139,301 | A→G | 5.6% | E467G (GAA→GGA) | yegH → | inner membrane protein |
| RA | 2,168,486 | T→C | 5.7% | intergenic (‑180/‑226) | yegR ← / → yegS | uncharacterized protein/phosphatidylglycerol kinase, metal‑dependent |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (1‑2/442 nt) | gatC ← | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,177,992 | C→T | 6.4% | E191E (GAG→GAA) | fbaB ← | fructose‑bisphosphate aldolase class I |
| RA | 2,191,239 | T→C | 5.4% | K136R (AAG→AGG) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,223,493 | G→A | 5.6% | A437T (GCT→ACT) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| RA | 2,287,931 | A→G | 5.7% | pseudogene (984/2525 nt) | yejO ← | pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP‑binding component of a transport system |
| RA | 2,384,136 | A→G | 5.2% | G529G (GGT→GGC) | yfbK ← | Von Willebrand factor domain putative lipoprotein |
| RA | 2,388,885 | C→A | 5.6% | P84H (CCC→CAC) | yfbO → | uncharacterized protein |
| RA | 2,416,941 | A→G | 5.4% | intergenic (+50/‑140) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,943 | C→G | 5.3% | intergenic (+52/‑138) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,416,945 | C→T | 5.3% | intergenic (+54/‑136) | pta → / → yfcC | phosphate acetyltransferase/putative inner membrane transporter; C4‑dicarboxylate anaerobic carrier family protein |
| RA | 2,445,728 | A→G | 7.4% | D219D (GAT→GAC) | mepA ← | murein DD‑endopeptidase |
| RA | 2,512,774 | C→T | 7.9% | intergenic (‑68/‑268) | mntH ← / → nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| RA | 2,577,915 | T→C | 6.6% | N155D (AAT→GAT) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,578,122 | C→T | 8.8% | A86T (GCA→ACA) | maeB ← | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| RA | 2,636,442 | C→T | 5.8% | L305L (CTG→CTA) | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,696,460 | G→A | 6.0% | A220A (GCG→GCA) | mltF → | membrane‑bound lytic transglycosylase F, murein hydrolase |
| RA | 2,777,379 | A→G | 5.7% | T89A (ACT→GCT) | yfjZ → | CP4‑57 prophage; antitoxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,794,412 | G→A | 6.0% | A54T (GCC→ACC) | gabP → | gamma‑aminobutyrate transporter |
| RA | 2,801,242 | C→G | 5.6% | A93G (GCC→GGC) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,801,260 | G→A | 5.7% | R99Q (CGG→CAG) | nrdI → | NrdEF cluster assembly flavodoxin |
| RA | 2,857,488 | G→A | 7.1% | L132L (CTG→CTA) | mutS → | methyl‑directed mismatch repair protein |
| RA | 2,875,564 | C→T | 6.4% | G256S (GGT→AGT) | cysD ← | sulfate adenylyltransferase, subunit 2 |
| RA | 2,926,340 | G→A | 5.6% | M11I (ATG→ATA) | ygdH → | UPF0717 family protein |
| RA | 3,081,191 | T→C | 5.1% | T149A (ACC→GCC) | tktA ← | transketolase 1, thiamine triphosphate‑binding |
| RA | 3,092,672 | A→G | 6.0% | K265K (AAA→AAG) | gshB → | glutathione synthetase |
| RA | 3,105,959 | G→A | 5.2% | T82T (ACG→ACA) | nupG → | nucleoside transporter |
| RA | 3,269,967 | C→T | 9.0% | intergenic (+365/+249) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,968 | G→T | 10.3% | intergenic (+366/+248) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,969 | A→C | 11.6% | intergenic (+367/+247) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,269,970 | A→G | 9.0% | intergenic (+368/+246) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,270,030 | T→C | 21.9% | intergenic (+428/+186) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| RA | 3,299,323:1 | +A | 5.4% | coding (350/519 nt) | yhbO → | stress‑resistance protein |
| RA | 3,424,646 | C→A | 6.7% | noncoding (2138/2904 nt) | rrlD ← | 23S ribosomal RNA of rrnD operon |
| RA | 3,486,274 | T→C | 7.3% | I52T (ATC→ACC) | crp → | cAMP‑activated global transcription factor, mediator of catabolite repression |
| RA | 3,522,154 | Δ1 bp | 5.1% | coding (598/780 nt) | hofM ← | DNA catabolic putative pilus assembly protein |
| MC JC | 3,559,357 | Δ1,629 bp | 100% | [rtcR]–[glpG] | [rtcR], glpR, glpR, [glpG] | |
| RA | 3,615,755 | G→A | 5.8% | G172D (GGC→GAC) | nikB → | nickel ABC transporter permease |
| RA | 3,806,430 | C→A | 9.2% | R213L (CGC→CTC) | waaG ← | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph]–[rph] | [rph], [rph] | |
| MC JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | magnesium/nickel/cobalt transporter |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,283,232 | A→C | 5.0% | intergenic (‑157/+21) | yjcF ← / ← actP | pentapeptide repeats protein/acetate transporter |
| RA | 4,296,060 | C→T | 45.1% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2066296–2066593 | 2066593 | 1–298 | 14 [13] | [12] 15 | [insH1] | [insH1] |
| * | * | ÷ | NC_000913 | 3423795–3424234 | 3424513–3424238 | 5–719 | 14 [13] | [13] 15 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4107560 | 4108498 | 939 | 14 [11] | [11] 15 | pfkA | 6‑phosphofructokinase I |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 127595 = | 70 (0.960) | 6 (0.090) | 6/250 | NT | 8.4% | intergenic (+8/‑317) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase |
| ? | NC_000913 | 127615 = | 65 (0.950) | intergenic (+28/‑297) | aceF/lpd | pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2‑oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase | |||||
| * | ? | NC_000913 | 274525 = | NA (NA) | 3 (0.040) | 3/252 | NT | NA | noncoding (625/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274559 = | NA (NA) | noncoding (591/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 310056 | 72 (0.990) | 4 (0.060) | 4/258 | NT | 5.4% | intergenic (‑30/+28) | ecpB/ecpA | ECP production pilus chaperone/ECP pilin |
| ? | NC_000913 | = 310060 | 69 (0.970) | intergenic (‑34/+24) | ecpB/ecpA | ECP production pilus chaperone/ECP pilin | |||||
| * | ? | NC_000913 | 349884 = | 58 (0.790) | 5 (0.070) | 5/252 | NT | 8.3% | noncoding (280/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | 349916 = | 55 (0.790) | noncoding (312/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 4 (0.060) | 3/252 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 758508 | NA (NA) | 3 (0.040) | 3/252 | NT | NA | noncoding (100/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | = 758519 | NA (NA) | noncoding (111/118 nt) | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | 1207790 = | 5 (0.070) | 27 (0.420) | 26/234 | NT | 65.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 24 (0.370) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 6 (0.080) | 37 (0.580) | 29/234 | NT | 71.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 24 (0.370) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1568914 | 51 (0.700) | 3 (0.040) | 3/244 | NT | 6.0% | intergenic (‑91/+40) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter |
| ? | NC_000913 | = 1568919 | 47 (0.700) | intergenic (‑96/+35) | yddW/gadC | liprotein, glycosyl hydrolase homolog/glutamate:gamma‑aminobutyric acid antiporter | |||||
| * | ? | NC_000913 | = 2077195 | 47 (0.640) | 3 (0.040) | 3/258 | NT | 6.1% | coding (84/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin |
| ? | NC_000913 | = 2077202 | 46 (0.650) | coding (91/369 nt) | cbeA | CP4‑44 prophage; cytoskeleton bundling‑enhancing factor A; CbtA antitoxin | |||||
| * | ? | NC_000913 | 2423706 = | 74 (1.010) | 4 (0.060) | 4/254 | NT | 5.3% | intergenic (‑167/+30) | yfcI/hisP | transposase_31 family protein/histidine ABC transporter ATPase |
| ? | NC_000913 | 2423730 = | 71 (1.020) | intergenic (‑191/+6) | yfcI/hisP | transposase_31 family protein/histidine ABC transporter ATPase | |||||
| * | ? | NC_000913 | = 3083839 | 79 (1.080) | 5 (0.070) | 4/248 | NT | 6.0% | intergenic (‑42/+96) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding |
| ? | NC_000913 | = 3083858 | 83 (1.220) | intergenic (‑61/+77) | speB/speA | agmatinase/biosynthetic arginine decarboxylase, PLP‑binding | |||||
| * | ? | NC_000913 | = 3135347 | 69 (0.940) | 4 (0.060) | 4/264 | NT | 5.3% | coding (1025/1500 nt) | pitB | phosphate transporter |
| ? | NC_000913 | = 3135365 | 75 (1.030) | coding (1007/1500 nt) | pitB | phosphate transporter | |||||
| * | ? | NC_000913 | = 3161488 | 73 (1.000) | 5 (0.070) | 5/250 | NT | 6.7% | coding (1182/1413 nt) | ftsP | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
| ? | NC_000913 | = 3161513 | 70 (1.020) | coding (1157/1413 nt) | ftsP | septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) | |||||
| * | ? | NC_000913 | 3163644 = | NA (NA) | 4 (0.060) | 3/248 | NT | NA | noncoding (1/30 nt) | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3163674 = | NA (NA) | intergenic (‑193/+41) | plsC/parC | 1‑acyl‑sn‑glycerol‑3‑phosphate acyltransferase/DNA topoisomerase IV, subunit A | |||||
| * | ? | NC_000913 | = 3534496 | 70 (0.960) | 4 (0.060) | 4/244 | NT | 5.4% | intergenic (+56/+20) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | NC_000913 | = 3534502 | 76 (1.130) | intergenic (+62/+14) | pck/envZ | phosphoenolpyruvate carboxykinase [ATP]/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | NC_000913 | 4168341 = | 54 (0.740) | 3 (0.050) +AGCAATTTTCGT |
3/242 | NT | 5.8% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913 | 4209774 = | NA (NA) | noncoding (1/76 nt) | gltV | tRNA‑Glu | |||||
| * | ? | NC_000913 | = 4274423 | 73 (1.000) | 4 (0.060) | 3/254 | NT | 5.1% | coding (299/537 nt) | ssb | single‑stranded DNA‑binding protein |
| ? | NC_000913 | = 4274430 | 78 (1.120) | coding (306/537 nt) | ssb | single‑stranded DNA‑binding protein | |||||