breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (lowest skew 10 of 34 shown)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4542682 =124 (1.700)4 (0.060) 4/248 NT 3.3% intergenic (+49/‑433) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
?NC_000913 4542996 = 117 (1.720)intergenic (+363/‑119) fimE/fimA tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
* ? NC_000913 4467063 =95 (1.300)4 (0.060) 3/258 NT 4.1% coding (184/948 nt) treR trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
?NC_000913 4467094 = 95 (1.340)coding (153/948 nt) treR trehalose 6‑phosphate‑inducible trehalose regulon transcriptional repressor
* ? NC_000913 4277024 =86 (1.180)3 (0.040) 3/260 NT 3.7% coding (1554/1587 nt) yjcC putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
?NC_000913 4277056 = 72 (1.010)coding (1586/1587 nt) yjcC putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase
* ? NC_000913 4165174 =103 (1.410)5 (0.070) 4/258 NT 4.8% coding (1536/1845 nt) btuB vitamin B12/cobalamin outer membrane transporter
?NC_000913 4165194 = 100 (1.410)coding (1556/1845 nt) btuB vitamin B12/cobalamin outer membrane transporter
* ? NC_000913 4146335 =84 (1.150)3 (0.040) 3/252 NT 3.6% coding (78/879 nt) pflC putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme
?NC_000913 4146358 = 83 (1.200)coding (101/879 nt) pflC putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme
* ? NC_000913 = 4142567105 (1.440)4 (0.060) 4/252 NT 3.9% coding (38/1080 nt) frwC putative enzyme IIC component of PTS
?NC_000913 = 4142575 96 (1.390)coding (46/1080 nt) frwC putative enzyme IIC component of PTS
* ? NC_000913 4011354 =86 (1.180)3 (0.040) 3/258 NT 3.3% coding (279/900 nt) yigM putative inner membrane EamA‑like transporter
?NC_000913 4011404 = 92 (1.300)coding (329/900 nt) yigM putative inner membrane EamA‑like transporter
* ? NC_000913 = 3927413101 (1.380)3 (0.040) 3/256 NT 2.9% coding (259/993 nt) asnA asparagine synthetase A
?NC_000913 = 3927459 107 (1.520)coding (305/993 nt) asnA asparagine synthetase A
* ? NC_000913 = 388054789 (1.220)3 (0.040) 3/250 NT 3.3% coding (675/1074 nt) recF gap repair protein
?NC_000913 = 3880561 95 (1.380)coding (661/1074 nt) recF gap repair protein
* ? NC_000913 3853937 =158 (2.160)3 (0.040) 3/260 NT 2.1% coding (16/1185 nt) emrD multidrug efflux system protein
?NC_000913 3853960 = 132 (1.850)coding (39/1185 nt) emrD multidrug efflux system protein