Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,858,325	A→G	D344D (GAT→GAC)	b1776 ←	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,858,325	0	A	G	100.0%	638.3 / NA	202	D344D (GAT→GAC)	b1776	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/90); total (112/90)

Only 100 of 204 total aligned reads displayed.

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAACGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         >  1:5320353/1‑93 (MQ=255)

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         >  2:890163/1‑93 (MQ=255)

gTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTc                                                                                         >  2:7105252/1‑93 (MQ=255)

  tttGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGa                                                                                       <  2:2572817/93‑1 (MQ=255)

     gTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCa                                                                                    >  2:4169772/1‑93 (MQ=255)

      ttATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCAt                                                                                   <  1:6675318/93‑1 (MQ=255)

       taacTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  <  2:1623690/90‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCTACCATc                                                                                  <  1:112071/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  <  1:2503159/93‑1 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  >  2:6433100/1‑93 (MQ=255)

       tATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATc                                                                                  >  1:3346623/1‑93 (MQ=255)

         tCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGc                                                                                <  1:1011113/93‑1 (MQ=255)

         tCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGc                                                                                >  2:1203656/1‑93 (MQ=255)

          cTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCa                                                                               <  1:2461744/93‑1 (MQ=255)

           tGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAt                                                                              >  1:5960299/1‑93 (MQ=255)

           tGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAt                                                                              >  1:4519653/1‑93 (MQ=255)

           tGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAt                                                                              >  2:204997/1‑93 (MQ=255)

             ttCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCa                                                                            >  2:368812/1‑93 (MQ=255)

               ccATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaaa                                                                          <  1:5453752/93‑1 (MQ=255)

               ccATGCGATAACGTTCCTTCAGGAGAGCGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaaa                                                                          >  1:4423591/1‑93 (MQ=255)

               ccATGCGATAACGTTCCTGCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCaaa                                                                          <  1:3718806/93‑1 (MQ=255)

                     gATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTc                                                                    >  1:3425656/1‑93 (MQ=255)

                     gATAACGGTACTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGCTTGCGGTTTTGTCGACCATCGCATCAAACCCTTc                                                                    <  2:2191431/93‑1 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   >  2:5176608/1‑93 (MQ=255)

                      aTAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcg                                                                   >  2:3265179/1‑93 (MQ=255)

                       tAACGTTCCTTCAGGAGAGTGGTTATTCGTCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcgc                                                                  >  1:191970/1‑93 (MQ=255)

                       tAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTcgc                                                                  >  1:3044953/1‑93 (MQ=255)

                          cGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGcc                                                               <  1:7910622/93‑1 (MQ=255)

                            ttCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAt                                                             <  2:945155/93‑1 (MQ=255)

                            ttCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAt                                                             <  2:1777006/93‑1 (MQ=255)

                             tCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAtt                                                            <  1:2922423/93‑1 (MQ=255)

                               cTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          <  1:5306250/93‑1 (MQ=255)

                               cTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGc                                                          <  1:6279487/93‑1 (MQ=255)

                                ttCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCg                                                         >  1:6196690/1‑93 (MQ=255)

                                 tCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGa                                                        >  1:6133488/1‑93 (MQ=255)

                                 tCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGa                                                        <  2:2299690/93‑1 (MQ=255)

                                  cAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAc                                                       >  2:1063880/1‑93 (MQ=255)

                                  cAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGAc                                                       <  1:1342115/93‑1 (MQ=255)

                                   aGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACa                                                      <  1:7843748/93‑1 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAg                                                     <  1:5760769/93‑1 (MQ=255)

                                    ggAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAg                                                     >  1:3658524/1‑93 (MQ=255)

                                       gagTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGcc                                                  <  2:3064270/93‑1 (MQ=255)

                                         gTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGa                                                <  1:3781603/93‑1 (MQ=255)

                                         gTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAACCTTCGCGCCATTGCGACAGGCCGa                                                >  2:4639389/1‑93 (MQ=255)

                                           ggTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATa                                              <  2:1407989/93‑1 (MQ=255)

                                           ggTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATa                                              >  2:3437670/1‑93 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACCGGCCGATAc                                             >  1:5283793/1‑93 (MQ=255)

                                            gTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAc                                             <  1:3680606/93‑1 (MQ=255)

                                             ttATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACg                                            <  2:2922143/93‑1 (MQ=255)

                                              tATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGa                                           <  1:1484468/93‑1 (MQ=255)

                                              tATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGa                                           >  2:1358041/1‑93 (MQ=255)

                                               aTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAt                                          >  1:2620589/1‑93 (MQ=255)

                                               aTTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAt                                          <  1:6984211/93‑1 (MQ=255)

                                                ttCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATg                                         >  1:209301/1‑93 (MQ=255)

                                                   atcaAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGt                                      >  2:3123518/1‑93 (MQ=255)

                                                    tcaAAGTCGTAAGTCATGATCACTTTGATGGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTg                                     <  2:5191526/93‑1 (MQ=255)

                                                     caAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGa                                    <  1:965146/93‑1 (MQ=255)

                                                      aaaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGat                                   >  1:7124093/1‑93 (MQ=255)

                                                      aaaGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGACGATACGATGCGTGat                                   >  1:2348920/1‑93 (MQ=255)

                                                        aGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatca                                 <  1:3499522/93‑1 (MQ=255)

                                                        aGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatca                                 <  2:5053925/93‑1 (MQ=255)

                                                        aGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGatca                                 <  1:6562970/93‑1 (MQ=255)

                                                           cGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCg                              >  2:4603073/1‑93 (MQ=255)

                                                            gTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCgg                             >  1:237027/1‑93 (MQ=255)

                                                               aGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAACCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGttt                          <  2:435179/93‑1 (MQ=255)

                                                                gTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTg                         >  1:7305795/1‑93 (MQ=255)

                                                                  cATGATCCCTTTTATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGAc                       <  2:1811619/93‑1 (MQ=255)

                                                                  cATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGAc                       <  1:7807652/93‑1 (MQ=255)

                                                                    tGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACtt                     >  1:5885615/1‑93 (MQ=255)

                                                                     gATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACttt                    <  1:7416545/93‑1 (MQ=255)

                                                                      aTCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTg                   >  2:3781680/1‑93 (MQ=255)

                                                                      aTCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTg                   >  2:5558646/1‑93 (MQ=255)

                                                                      aTCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTg                   >  1:7643388/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  1:3901067/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  2:2940170/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  >  1:6039281/1‑93 (MQ=255)

                                                                       tCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGa                  <  1:6764160/93‑1 (MQ=255)

                                                                         ccTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                <  1:6708999/92‑1 (MQ=255)

                                                                         aCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                <  2:667453/93‑1 (MQ=255)

                                                                         aCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                >  1:1154516/1‑93 (MQ=255)

                                                                         aCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATa                <  1:3391686/93‑1 (MQ=255)

                                                                          cTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAg               <  2:3479067/93‑1 (MQ=255)

                                                                          cTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAg               <  2:6794054/93‑1 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              >  2:406255/1‑93 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              <  1:6442532/93‑1 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              >  1:7729760/1‑93 (MQ=255)

                                                                           tttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgc              <  2:1898755/93‑1 (MQ=255)

                                                                            ttGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcg             >  2:5960631/1‑93 (MQ=255)

                                                                             tGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcgc            <  2:1609371/93‑1 (MQ=255)

                                                                             tGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcgc            >  1:2142339/1‑93 (MQ=255)

                                                                             tGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcgc            <  2:284299/93‑1 (MQ=255)

                                                                              gATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAgcggc           >  2:2824440/1‑91 (MQ=255)

                                                                              gATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgcc           <  1:697129/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  2:4662650/93‑1 (MQ=255)

                                                                                ttGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGcgccgc         <  2:7672375/93‑1 (MQ=255)

                                                                                    ggTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGc     >  2:3940338/1‑93 (MQ=255)

                                                                                    ggTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGc     <  1:5594787/93‑1 (MQ=255)

                                                                                     gTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCt    >  2:7181615/1‑93 (MQ=255)

                                                                                     gTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCt    >  1:4797104/1‑93 (MQ=255)

                                                                                       tttGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATGGCGCCGCTGGCTaa  >  1:2336645/1‑93 (MQ=255)

GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAA  >  NC_000913/1858235‑1858414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  >  NC_000913/1858232‑1858417

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                              <  SRR4302543.7024114/94‑1 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTG                                                                                              >  SRR4302543.6108207/1‑94 (MQ=60)

 CGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGT                                                                                             >  SRR4302543.7539776/1‑94 (MQ=60)

 CGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATAAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGT                                                                                             >  SRR4302543.7539772/1‑94 (MQ=60)

  GGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAACGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTC                                                                                            >  SRR4302543.5368428/1‑94 (MQ=60)

   GTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCG                                                                                           >  SRR4302543.2881239/1‑94 (MQ=60)

        GTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCAT                                                                                      >  SRR4302543.1143069/1‑94 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                     <  SRR4302543.6738340/94‑1 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                     <  SRR4302543.6035679/94‑1 (MQ=60)

         TTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATC                                                                                     >  SRR4302543.3376755/1‑94 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCTACCATCG                                                                                    <  SRR4302543.113088/94‑1 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCG                                                                                    >  SRR4302543.3454517/1‑94 (MQ=60)

          TATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCG                                                                                    <  SRR4302543.2525881/94‑1 (MQ=60)

           ttcttTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGC                                                                                   <  SRR4302543.4515703/89‑1 (MQ=60)

            TCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCA                                                                                  <  SRR4302543.1020059/94‑1 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCATTTTGATTGCGGTTTTGTCTACCATCGCAT                                                                                 >  SRR4302543.5312505/1‑94 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                 >  SRR4302543.6014866/1‑94 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                 <  SRR4302543.2483938/94‑1 (MQ=60)

             CTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCAT                                                                                 >  SRR4302543.4560763/1‑94 (MQ=60)

               GTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCA                                                                               >  SRR4302543.3965700/1‑94 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                             >  SRR4302543.2159163/1‑94 (MQ=60)

                 TCCATGCGATAACGTTCCTTCAGGAGAGCGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAA                                                                             >  SRR4302543.4463681/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                            <  SRR4302543.5503202/94‑1 (MQ=60)

                  CCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                            >  SRR4302543.1436323/1‑94 (MQ=60)

                  CCATGCGATAACGTTCCTGCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAAC                                                                            <  SRR4302543.3751510/94‑1 (MQ=60)

                   CATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACC                                                                           >  SRR4302543.250330/1‑94 (MQ=60)

                    ATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCC                                                                          >  SRR4302543.6809108/1‑94 (MQ=60)

                      GCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTT                                                                        >  SRR4302543.6001529/1‑94 (MQ=60)

                       CGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTC                                                                       >  SRR4302543.3456309/1‑94 (MQ=60)

                         ATAACGTTCCTTCAGGAGAGTGGTTATTCGTCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGC                                                                     >  SRR4302543.193590/1‑94 (MQ=60)

                         ATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGC                                                                     >  SRR4302543.3072408/1‑94 (MQ=60)

                          TAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCG                                                                    <  SRR4302543.774791/94‑1 (MQ=60)

                          TAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGAATCAAACCATTCGCG                                                                    >  SRR4302543.1032632/1‑94 (MQ=60)

                           AACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGC                                                                   >  SRR4302543.3498529/1‑94 (MQ=60)

                             CGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCA                                                                 >  SRR4302543.3281947/1‑94 (MQ=60)

                             CGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCA                                                                 <  SRR4302543.7984942/94‑1 (MQ=60)

                              GTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCTGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCAT                                                                >  SRR4302543.3955731/1‑94 (MQ=60)

                                TCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTG                                                              <  SRR4302543.2948973/94‑1 (MQ=60)

                                  CTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCG                                                            <  SRR4302543.5354168/94‑1 (MQ=60)

                                  CTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCG                                                            <  SRR4302543.6338671/94‑1 (MQ=60)

                                  CTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCG                                                            >  SRR4302543.6255220/1‑94 (MQ=60)

                                   TTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGA                                                           >  SRR4302543.3786383/1‑94 (MQ=60)

                                   TTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGA                                                           >  SRR4302543.6191586/1‑94 (MQ=60)

                                     CAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACA                                                         <  SRR4302543.1354098/94‑1 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        <  SRR4302543.5466641/94‑1 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        >  SRR4302543.3690654/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        >  SRR4302543.5364777/1‑94 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        <  SRR4302543.7917680/94‑1 (MQ=60)

                                      AGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAG                                                        <  SRR4302543.6761356/94‑1 (MQ=60)

                                       GGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGG                                                       <  SRR4302543.5813250/94‑1 (MQ=60)

                                          GAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCG                                                    <  SRR4302543.205085/94‑1 (MQ=60)

                                           AGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGA                                                   <  SRR4302543.6560555/94‑1 (MQ=60)

                                            GTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGAT                                                  <  SRR4302543.3814910/94‑1 (MQ=60)

                                             TGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCggatc                                                 >  SRR4302543.7357848/1‑89 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACCGGCCGATAC                                                >  SRR4302543.5331478/1‑94 (MQ=60)

                                              GGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAC                                                >  SRR4302543.5331479/1‑94 (MQ=60)

                                               GTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACG                                               >  SRR4302543.7038386/1‑94 (MQ=60)

                                               GTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACG                                               <  SRR4302543.3712945/94‑1 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             <  SRR4302543.1497838/94‑1 (MQ=60)

                                                 TATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGAT                                             >  SRR4302543.2644332/1‑94 (MQ=60)

                                                  ATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATG                                            <  SRR4302543.7049943/94‑1 (MQ=60)

                                                  ATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATG                                            >  SRR4302543.211085/1‑94 (MQ=60)

                                                   TTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGGCCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGC                                           <  SRR4302543.7880381/94‑1 (MQ=60)

                                                    TCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCG                                          >  SRR4302543.5661377/1‑94 (MQ=60)

                                                     CATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGT                                         <  SRR4302543.6682687/94‑1 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                        <  SRR4302543.7707057/94‑1 (MQ=60)

                                                      ATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTG                                        >  SRR4302543.2956919/1‑94 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      <  SRR4302543.973616/94‑1 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      >  SRR4302543.2374900/1‑94 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      >  SRR4302543.7193304/1‑94 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGAT                                      <  SRR4302543.1308006/94‑1 (MQ=60)

                                                        CAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGACGATACGATGCGTGAT                                      >  SRR4302543.2370220/1‑94 (MQ=60)

                                                         AAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATC                                     >  SRR4302543.3544029/1‑94 (MQ=60)

                                                         AAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGGGATC                                     >  SRR4302543.2364059/1‑94 (MQ=60)

                                                          AAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCA                                    <  SRR4302543.2213322/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                   <  SRR4302543.6624721/94‑1 (MQ=60)

                                                           AGTCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCAT                                   <  SRR4302543.3530824/94‑1 (MQ=60)

                                                             GCGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCG                                 <  SRR4302543.2564855/94‑1 (MQ=60)

                                                              CGTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGG                                >  SRR4302543.239077/1‑94 (MQ=60)

                                                               GTAAGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATAGGATGCGTGATCATCGGT                               >  SRR4302543.5904258/1‑94 (MQ=60)

                                                                  AGTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTG                            >  SRR4302543.7376238/1‑94 (MQ=60)

                                                                   GTCATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGA                           <  SRR4302543.6242564/94‑1 (MQ=60)

                                                                     CATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACT                         >  SRR4302543.3415148/1‑94 (MQ=60)

                                                                     CATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACT                         <  SRR4302543.7881248/94‑1 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                        >  SRR4302543.7905468/1‑94 (MQ=60)

                                                                      ATGATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTT                        >  SRR4302543.5939255/1‑94 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      <  SRR4302543.7487692/94‑1 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      >  SRR4302543.7715877/1‑94 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      >  SRR4302543.4823949/1‑94 (MQ=60)

                                                                        GATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTG                      <  SRR4302543.3725492/94‑1 (MQ=60)

                                                                         ATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGA                     >  SRR4302543.6481261/1‑94 (MQ=60)

                                                                         ATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGA                     >  SRR4302543.3935512/1‑94 (MQ=60)

                                                                         ATCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGA                     >  SRR4302543.6096448/1‑94 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                    <  SRR4302543.5583819/94‑1 (MQ=60)

                                                                          TCACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGAT                    <  SRR4302543.6828039/94‑1 (MQ=60)

                                                                           CTCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATA                   <  SRR4302543.3912613/94‑1 (MQ=60)

                                                                           CACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATA                   >  SRR4302543.6266508/1‑94 (MQ=60)

                                                                           CACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATA                   >  SRR4302543.1165023/1‑94 (MQ=60)

                                                                            CCTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  <  SRR4302543.6772353/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  <  SRR4302543.3422096/94‑1 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  >  SRR4302543.6133/1‑94 (MQ=60)

                                                                            ACTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAG                  <  SRR4302543.7168291/94‑1 (MQ=60)

                                                                             CTTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGC                 >  SRR4302543.7802819/1‑94 (MQ=60)

                                                                              TTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCG                <  SRR4302543.2468785/94‑1 (MQ=60)

                                                                              TTTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCG                <  SRR4302543.6503225/94‑1 (MQ=60)

                                                                               TTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGC               >  SRR4302543.2161515/1‑94 (MQ=60)

                                                                               TTGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGC               >  SRR4302543.754654/1‑94 (MQ=60)

                                                                                TGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCC              >  SRR4302543.851305/1‑94 (MQ=60)

                                                                                TGATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCC              >  SRR4302543.6954822/1‑94 (MQ=60)

                                                                                 GATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCG             <  SRR4302543.703510/94‑1 (MQ=60)

                                                                                  ATTGCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGC            >  SRR4302543.7443405/1‑94 (MQ=60)

                                                                                     GCGGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGG         <  SRR4302543.7958686/94‑1 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCT       <  SRR4302543.5645750/94‑1 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCT       >  SRR4302543.1690889/1‑94 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCT       >  SRR4302543.4840950/1‑94 (MQ=60)

                                                                                       GGTTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATAATCGGTTTGACTTTGATAGCGCCGCTGGCT       >  SRR4302543.3703806/1‑94 (MQ=60)

                                                                                         TTTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATGGCGCCGCTGGCTAA     >  SRR4302543.2357845/1‑94 (MQ=60)

                                                                                          TTTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCGCGCTAAT    >  SRR4302543.2643202/1‑94 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA   >  SRR4302543.7278415/1‑94 (MQ=60)

                                                                                           TTGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATA   <  SRR4302543.3633062/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAGCCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  <  SRR4302543.4910883/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  <  SRR4302543.4661204/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  <  SRR4302543.7793773/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  <  SRR4302543.6202143/94‑1 (MQ=60)

                                                                                            TGTCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAC  >  SRR4302543.6627950/1‑94 (MQ=60)

GCGGTTTTGTTATCTGTTCCATGCGATAACGTTCCTTCAGGAGAGTGGTTATTCATCAAAGTCGTAAGTCATGATCACTTTGATTGCGGTTTTATCGACCATCGCATCAAACCCTTCGCGCCATTGCGACAGGCCGATACGATGCGTGATCATCGGTTTGACTTTGATAGCGCCGCTGGCTAATAG  >  NC_000913/1858232‑1858417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`