Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,968,327	T→C	I228V (ATT→GTT)	tap ←	methyl‑accepting chemotaxis protein IV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,968,327	0	T	C	100.0%	591.8 / NA	188	I228V (ATT→GTT)	tap	methyl‑accepting chemotaxis protein IV
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (81/107); total (81/107)

Only 100 of 193 total aligned reads displayed.

CCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAATGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCA  >  NC_000913/1968237‑1968415

ccTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGc                                                                                        >  2:6616468/1‑93 (MQ=255)

  tgctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTg                                                                                      >  1:703249/1‑93 (MQ=255)

  tgctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTg                                                                                      >  1:7765334/1‑93 (MQ=255)

  tgctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTg                                                                                      >  1:138636/1‑93 (MQ=255)

  tgctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGACAGATTACCCGCAGCAAAGCTg                                                                                      >  1:1160410/1‑93 (MQ=255)

   gctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGt                                                                                     <  1:2530737/93‑1 (MQ=255)

   gctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGt                                                                                     <  1:7452813/93‑1 (MQ=255)

    ctgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTc                                                                                    >  2:2219648/1‑93 (MQ=255)

     tgcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCa                                                                                   >  2:4569206/1‑93 (MQ=255)

      gcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaa                                                                                  >  2:1125430/1‑93 (MQ=255)

      gcATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaa                                                                                  >  1:3189876/1‑93 (MQ=255)

        aTGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaaaa                                                                                <  2:5635012/93‑1 (MQ=255)

        aTGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaaaa                                                                                >  2:1630494/1‑93 (MQ=255)

        aTGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaaaa                                                                                >  2:1517182/1‑93 (MQ=255)

        aTGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCaaaa                                                                                <  2:6387214/93‑1 (MQ=255)

         tGGTCTTCAGACTGGCAGAGATGGCGGTGATCTCATTACGACCTTATCCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAAt                                                                               <  2:7037361/93‑1 (MQ=255)

          ggTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATg                                                                              >  1:5782702/1‑93 (MQ=255)

          ggTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATg                                                                              >  1:5524038/1‑93 (MQ=255)

          ggTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATg                                                                              <  2:7160066/93‑1 (MQ=255)

             ctgcAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCt                                                                           <  2:6687274/90‑1 (MQ=255)

             cTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCt                                                                           <  1:7842994/93‑1 (MQ=255)

             cTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCt                                                                           >  1:3012533/1‑93 (MQ=255)

             cTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCt                                                                           <  2:7583498/93‑1 (MQ=255)

             cTTCAGACTGGCAAAAATCGCGGTGCTCTCATTACGACCATATACCGCAATCGGACGAGCCAGATTACACGCAGAAACACCGTCACAATGGCt                                                                           >  2:375626/1‑93 (MQ=255)

              ttCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTa                                                                          <  2:1737999/93‑1 (MQ=255)

              ttCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTa                                                                          <  1:1089092/93‑1 (MQ=255)

              tacAGACTGGCAAAAATGGCTGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTa                                                                          <  2:5755438/91‑1 (MQ=255)

                cAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTAcc                                                                        <  2:344315/93‑1 (MQ=255)

                cAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTAcc                                                                        <  1:3504821/93‑1 (MQ=255)

                cAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTAcc                                                                        <  1:1286846/93‑1 (MQ=255)

                  gACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGa                                                                      >  2:3188356/1‑93 (MQ=255)

                   aCTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGAt                                                                     <  2:4275289/93‑1 (MQ=255)

                    ctagCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATa                                                                    >  2:4421499/4‑93 (MQ=255)

                    cTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATa                                                                    <  2:5337143/93‑1 (MQ=255)

                     tGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATaa                                                                   <  2:1615978/93‑1 (MQ=255)

                     tGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATaa                                                                   <  1:6539950/93‑1 (MQ=255)

                         aaaaaTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGc                                                               <  1:4723495/93‑1 (MQ=255)

                          aaaaTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGcc                                                              >  2:3823490/1‑93 (MQ=255)

                          aaaaTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGcc                                                              <  1:6797158/93‑1 (MQ=255)

                           aaaTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCa                                                             <  1:3270280/93‑1 (MQ=255)

                             aTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGt                                                           <  1:6829225/93‑1 (MQ=255)

                             aTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGt                                                           <  2:5807639/93‑1 (MQ=255)

                             aTGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGt                                                           <  1:7372687/93‑1 (MQ=255)

                               ggCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTgg                                                         >  2:7193482/1‑93 (MQ=255)

                               ggCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTgg                                                         <  2:1894589/93‑1 (MQ=255)

                               ggCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTgg                                                         <  2:2079383/93‑1 (MQ=255)

                                  ggTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTg                                                      >  2:2519374/1‑93 (MQ=255)

                                    tGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGaa                                                    <  1:4965414/93‑1 (MQ=255)

                                     gATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGaaa                                                   >  2:1866409/1‑92 (MQ=255)

                                     gATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAAc                                                   >  1:99920/1‑93 (MQ=255)

                                      aTCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACa                                                  <  1:7899218/93‑1 (MQ=255)

                                       tctcATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACaa                                                 >  2:2068878/1‑93 (MQ=255)

                                       tctcATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACaa                                                 <  1:440589/93‑1 (MQ=255)

                                       tctcATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGGTGAACaa                                                 >  2:6910514/1‑93 (MQ=255)

                                        ctcATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAat                                                <  2:3419148/93‑1 (MQ=255)

                                           aTTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAatcat                                             <  1:7291253/93‑1 (MQ=255)

                                           aTTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAatcat                                             <  2:5158556/93‑1 (MQ=255)

                                           aTTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAaccat                                             >  2:1753891/1‑93 (MQ=255)

                                            ttACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAatcatc                                            <  1:641415/93‑1 (MQ=255)

                                              tcGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCtt                                          <  2:6757039/92‑1 (MQ=255)

                                              aCGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCtt                                          <  1:896947/93‑1 (MQ=255)

                                                 aCCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTAAACAATCATCTTgcc                                       >  1:5414453/1‑92 (MQ=255)

                                                   cATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGcgcg                                     <  2:2720498/93‑1 (MQ=255)

                                                   cATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGcgcg                                     >  2:1965448/1‑93 (MQ=255)

                                                     tataCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTc                                   >  2:6101116/1‑93 (MQ=255)

                                                     tataCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTc                                   >  2:6352343/1‑93 (MQ=255)

                                                     tataCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTc                                   >  1:3693740/1‑93 (MQ=255)

                                                     tataCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTc                                   <  2:2866291/93‑1 (MQ=255)

                                                     tataCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTc                                   >  1:2439391/1‑93 (MQ=255)

                                                      ataCCGAGATAGGACACGCCAGAGTACTGGCGGCAACGTTGTTAAAATGGTTACAGATATTGGCCAGTGGTTGAACACTCAACTTGCGCGTca                                  <  2:2802284/93‑2 (MQ=255)

                                                        aCCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTccac                                >  1:4427733/1‑93 (MQ=255)

                                                         ccGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTccacc                               <  1:5284931/93‑1 (MQ=255)

                                                           gCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCcaccac                             >  1:6056832/1‑93 (MQ=255)

                                                            cAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACcaca                            <  2:5870420/93‑1 (MQ=255)

                                                             aaTCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTGCACcacac                           >  1:3209477/1‑92 (MQ=255)

                                                             aaTCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAg                           >  2:2342179/1‑93 (MQ=255)

                                                                 ggACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCa                       >  2:2184777/1‑93 (MQ=255)

                                                                  gACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCAc                      >  1:4836940/1‑93 (MQ=255)

                                                                  gACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCAc                      <  1:6916063/93‑1 (MQ=255)

                                                                     gcgcCAGATTACCCGCGGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCActgc                   <  1:2261221/93‑1 (MQ=255)

                                                                      cgcCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCActgct                  <  1:3920296/93‑1 (MQ=255)

                                                                        ccAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGa                <  2:4130869/93‑1 (MQ=255)

                                                                        ccAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGa                <  1:5570143/93‑1 (MQ=255)

                                                                         cAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAt               >  1:615819/1‑93 (MQ=255)

                                                                         cAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAt               <  1:3306145/93‑1 (MQ=255)

                                                                         cAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAt               <  2:7733086/93‑1 (MQ=255)

                                                                          aGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATg              <  2:3005300/93‑1 (MQ=255)

                                                                           gATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGt             >  1:1961710/1‑93 (MQ=255)

                                                                           gATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGt             <  1:547790/93‑1 (MQ=255)

                                                                             ttACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGATCAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAg           <  1:2103206/93‑1 (MQ=255)

                                                                             ttACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAg           <  2:875721/93‑1 (MQ=255)

                                                                               aCCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGAt         <  1:1778199/93‑1 (MQ=255)

                                                                               aCCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGAt         <  2:7765333/93‑1 (MQ=255)

                                                                                cccGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTAAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATc        <  1:2927620/93‑1 (MQ=255)

                                                                                 ccGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATcg       <  2:4809571/93‑1 (MQ=255)

                                                                                  cGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATcgc      <  2:7902510/93‑1 (MQ=255)

                                                                                    cagcaACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATcgccg    <  1:4146601/93‑1 (MQ=255)

                                                                                     agcaACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATcgccgc   <  2:7693661/93‑1 (MQ=255)

                                                                                      gcaACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGca  >  2:3083361/1‑93 (MQ=255)

                                                                                      gcaACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGca  >  1:932875/1‑93 (MQ=255)

CCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAATGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCA  >  NC_000913/1968237‑1968415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAATGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCAACAAT  >  NC_000913/1968235‑1968420

AGCCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACG                                                                                              >  SRR4302543.931105/1‑94 (MQ=60)

 GCCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGC                                                                                             >  SRR4302543.4849901/1‑94 (MQ=60)

  CCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCT                                                                                            >  SRR4302543.1244113/1‑94 (MQ=60)

  CCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCT                                                                                            >  SRR4302543.3237012/1‑94 (MQ=60)

   CTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTG                                                                                           >  SRR4302543.709663/1‑94 (MQ=60)

   CTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTG                                                                                           >  SRR4302543.139856/1‑94 (MQ=60)

   CTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTG                                                                                           >  SRR4302543.7838611/1‑94 (MQ=60)

   CTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGACAGATTACCCGCAGCAAAGCTG                                                                                           >  SRR4302543.1170983/1‑94 (MQ=60)

    TGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGT                                                                                          >  SRR4302543.920065/1‑94 (MQ=60)

     GCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTC                                                                                         <  SRR4302543.2553770/94‑1 (MQ=60)

     GCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTC                                                                                         >  SRR4302543.3025048/1‑94 (MQ=60)

     GCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTC                                                                                         <  SRR4302543.7524224/94‑1 (MQ=60)

     GCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTC                                                                                         <  SRR4302543.7524225/94‑1 (MQ=60)

       TGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAA                                                                                       >  SRR4302543.3218642/1‑94 (MQ=60)

       TGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAA                                                                                       >  SRR4302543.377112/1‑94 (MQ=60)

          ATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAAT                                                                                    <  SRR4302543.4912123/94‑1 (MQ=60)

           TGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATG                                                                                   >  SRR4302543.5835319/1‑94 (MQ=60)

           TGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATG                                                                                   >  SRR4302543.5574213/1‑94 (MQ=60)

             GTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGC                                                                                 >  SRR4302543.2451749/1‑94 (MQ=60)

              TCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCT                                                                                >  SRR4302543.3039806/1‑94 (MQ=60)

               CTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTA                                                                               <  SRR4302543.7916924/94‑1 (MQ=60)

                TTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTAC                                                                              <  SRR4302543.7799422/94‑1 (MQ=60)

                TTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTAC                                                                              <  SRR4302543.1098880/94‑1 (MQ=60)

                  CAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCG                                                                            <  SRR4302543.3536155/94‑1 (MQ=60)

                  CAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCG                                                                            <  SRR4302543.1298317/94‑1 (MQ=60)

                   AGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGA                                                                           >  SRR4302543.5510377/1‑94 (MQ=60)

                       TGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAAT                                                                       <  SRR4302543.6601512/94‑1 (MQ=60)

                       TGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAAT                                                                       <  SRR4302543.3958000/94‑1 (MQ=60)

                       TGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAAT                                                                       >  SRR4302543.6351129/1‑94 (MQ=60)

                           AAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCC                                                                   <  SRR4302543.4766653/94‑1 (MQ=60)

                            AAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCA                                                                  <  SRR4302543.6861347/94‑1 (MQ=60)

                             AAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAG                                                                 <  SRR4302543.3299823/94‑1 (MQ=60)

                               ATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTG                                                               <  SRR4302543.5677162/94‑1 (MQ=60)

                               ATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTG                                                               <  SRR4302543.6893695/94‑1 (MQ=60)

                               ATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTG                                                               <  SRR4302543.7443569/94‑1 (MQ=60)

                                   CGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTG                                                           <  SRR4302543.2709613/94‑1 (MQ=60)

                                   CGGTGATCTCATTACGACCATATACCGCAATCGGAAGCGCCAGATTACCCGCAGCATCGCTGTCAAAATGCCTACCGATAATGTCCAGTGGTTG                                                           >  SRR4302543.2665069/1‑94 (MQ=60)

                                      TGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAAC                                                        >  SRR4302543.100847/1‑94 (MQ=60)

                                      TGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAAC                                                        <  SRR4302543.5010612/94‑1 (MQ=60)

                                      TGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAAC                                                        >  SRR4302543.3146/1‑94 (MQ=60)

                                       GATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACA                                                       >  SRR4302543.4452010/1‑94 (MQ=60)

                                        ATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAA                                                      <  SRR4302543.7973479/94‑1 (MQ=60)

                                         TCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAAT                                                     <  SRR4302543.444712/94‑1 (MQ=60)

                                          CTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATC                                                    >  SRR4302543.7921925/1‑94 (MQ=60)

                                          CTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAAAAATC                                                    >  SRR4302543.3429165/1‑94 (MQ=60)

                                          CTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCAATAATAGCCAGTGGCTGAACAATC                                                    >  SRR4302543.1635632/1‑94 (MQ=60)

                                            CATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCAT                                                  >  SRR4302543.6787955/1‑94 (MQ=60)

                                            CATTACCACCATATACCGCAATCGGACGCGCCAGATTCCCCGCCGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCAT                                                  <  SRR4302543.1809476/94‑1 (MQ=60)

                                             ATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATC                                                 <  SRR4302543.7361622/94‑1 (MQ=60)

                                              TTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCT                                                <  SRR4302543.647273/94‑1 (MQ=60)

                                              TTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCT                                                <  SRR4302543.6214780/94‑1 (MQ=60)

                                                ACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTG                                              <  SRR4302543.904865/94‑1 (MQ=60)

                                                  GACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCG                                            <  SRR4302543.958097/94‑1 (MQ=60)

                                                  GACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCG                                            <  SRR4302543.4719721/94‑1 (MQ=60)

                                                  GACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCG                                            >  SRR4302543.5463712/1‑94 (MQ=60)

                                                  GACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTAAACAATCATCTTGCC                                            >  SRR4302543.5463713/1‑94 (MQ=60)

                                                     CATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGT                                         >  SRR4302543.2048575/1‑94 (MQ=60)

                                                      ATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTC                                        >  SRR4302543.2461388/1‑94 (MQ=60)

                                                      ATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTC                                        >  SRR4302543.3726209/1‑94 (MQ=60)

                                                        ATACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCA                                      >  SRR4302543.584975/1‑94 (MQ=60)

                                                         TACCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCAC                                     >  SRR4302543.4467850/1‑94 (MQ=60)

                                                           CCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCA                                   <  SRR4302543.5332627/94‑1 (MQ=60)

                                                           CCGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCA                                   <  SRR4302543.5332626/94‑1 (MQ=60)

                                                            CGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCAC                                  <  SRR4302543.7315070/94‑1 (MQ=60)

                                                            CGCAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCAC                                  >  SRR4302543.6114166/1‑94 (MQ=60)

                                                              GAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAG                                <  SRR4302543.5541241/94‑1 (MQ=60)

                                                              CAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTGCACCACAC                                >  SRR4302543.3238446/1‑94 (MQ=60)

                                                              CAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAG                                >  SRR4302543.434997/1‑94 (MQ=60)

                                                              CAATCGGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAG                                >  SRR4302543.3238447/1‑94 (MQ=60)

                                                                   GGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCAC                           >  SRR4302543.4881052/1‑94 (MQ=60)

                                                                   GGACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCAC                           <  SRR4302543.6888264/94‑1 (MQ=60)

                                                                    GACGCGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACT                          <  SRR4302543.6981076/94‑1 (MQ=60)

                                                                       GCGCGAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCT                       <  SRR4302543.7399756/94‑1 (MQ=60)

                                                                       GCGCCAGATTACCCGCGGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCT                       <  SRR4302543.2281843/94‑1 (MQ=60)

                                                                        CGCCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTG                      <  SRR4302543.3954893/94‑1 (MQ=60)

                                                                          CCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAT                    <  SRR4302543.1346558/94‑1 (MQ=60)

                                                                          CCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAT                    <  SRR4302543.5620828/94‑1 (MQ=60)

                                                                          CCAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGAT                    >  SRR4302543.621451/1‑94 (MQ=60)

                                                                           CAGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATG                   <  SRR4302543.3335977/94‑1 (MQ=60)

                                                                            AGATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGT                  >  SRR4302543.1979307/1‑94 (MQ=60)

                                                                             GATTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTA                 <  SRR4302543.552841/94‑1 (MQ=60)

                                                                               TTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGATCAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGA               <  SRR4302543.2122028/94‑1 (MQ=60)

                                                                               TTACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGA               <  SRR4302543.2122029/94‑1 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             >  SRR4302543.6583575/1‑94 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             <  SRR4302543.7055582/94‑1 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             <  SRR4302543.1794085/94‑1 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             <  SRR4302543.7055581/94‑1 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             <  SRR4302543.84863/94‑1 (MQ=60)

                                                                                 ACCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATC             <  SRR4302543.248032/94‑1 (MQ=60)

                                                                                  CCCGCAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTAAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCG            <  SRR4302543.2954212/94‑1 (MQ=60)

                                                                                      CAGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGC        <  SRR4302543.4184078/94‑1 (MQ=60)

                                                                                       AGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCA       >  SRR4302543.3718195/1‑94 (MQ=60)

                                                                                       AGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCA       >  SRR4302543.693527/1‑94 (MQ=60)

                                                                                       AGCAACGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCA       >  SRR4302543.941029/1‑94 (MQ=60)

                                                                                            CGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCAACAAT  <  SRR4302543.7474830/94‑1 (MQ=60)

                                                                                            CGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCAACAAT  <  SRR4302543.5537418/94‑1 (MQ=60)

AGCCTGCTGCATGGTCTTCAGACTGGCAAAAATGGCGGTGATCTCATTACGACCATATACCGCAATCGGACGCGCCAGATTACCCGCAGCAATGCTGTCAAAATGGCTACCGATAATGGCCAGTGGTTGAACAATCATCTTGCGCGTCCACCACAGCGCACTGCTGATGTAGATCGCCGCAACAAT  >  NC_000913/1968235‑1968420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`