Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,037,676 |
(C)5→6 |
coding (177/1005 nt) |
b1971 → |
putative reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,037,671 | 1 | . | C | 98.0%
| 462.8
/ 1.2
| 153 | coding (172/1005 nt) | b1971 | putative reductase |
| Reads supporting (aligned to +/- strand): ref base . (3/0); new base C (81/69); total (84/69) |
| Fisher's exact test for biased strand distribution p-value = 2.52e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 192 total aligned reads displayed.
AAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑C‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT > NC_000913/2037579‑2037758
|
aaGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccg‑cccg > 1:6694241/1‑93 (MQ=255)
aaGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccg‑cccg < 2:1695882/93‑1 (MQ=255)
aGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccg‑cccg‑c < 2:3611476/93‑1 (MQ=255)
gCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccg‑cccg‑c‑c > 1:5435543/1‑93 (MQ=255)
gCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATcgcccg‑cccg‑c‑c > 2:2360837/1‑93 (MQ=255)
aCTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑ccc > 2:4843913/1‑93 (MQ=255)
aCTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGCTTAAAGGGAACGATCGCCCG‑cccg‑c‑ccc > 2:1859325/1‑93 (MQ=255)
cTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑cccc < 2:1729198/93‑1 (MQ=255)
cTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑cccc < 2:3502529/93‑1 (MQ=255)
tGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑ccccc > 1:2284099/1‑92 (MQ=255)
tGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑ccccc > 1:3670822/1‑92 (MQ=255)
ggCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑cccg‑c‑cccccgc < 2:3880735/93‑4 (MQ=255)
cAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGaa > 2:6679432/1‑93 (MQ=255)
aGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGaaa < 2:182836/93‑1 (MQ=255)
gTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGaaaa > 1:1383965/1‑93 (MQ=255)
aaCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAgcgc < 1:7036905/93‑1 (MQ=255)
aaCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAgcgc > 2:6302747/1‑93 (MQ=255)
aCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCt > 2:520869/1‑93 (MQ=255)
aCTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCt > 1:3994292/1‑93 (MQ=255)
cTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTg > 1:2385343/1‑93 (MQ=255)
cTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTg > 1:7104221/1‑93 (MQ=255)
tGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTgg > 2:5983422/1‑93 (MQ=255)
tGCACTTTCTTTGCCTCACGCTACGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTgg < 1:6999150/93‑1 (MQ=255)
gCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGa < 1:685375/93‑1 (MQ=255)
gCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGa > 1:2696375/1‑93 (MQ=255)
aCTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGt > 1:5166187/1‑93 (MQ=255)
tttctttGCCTCACGCTGCGCATGCCGATCTGGTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTc > 2:1094392/1‑93 (MQ=255)
ctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGc > 1:5383141/1‑93 (MQ=255)
ctttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGc < 1:7571639/93‑1 (MQ=255)
ttGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGGTCAGCaa > 1:5401513/1‑93 (MQ=255)
gCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGc < 2:4689835/93‑1 (MQ=255)
ccTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc < 1:5885001/93‑1 (MQ=255)
ccTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGcc < 1:639042/93‑1 (MQ=255)
tCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTg > 1:158349/1‑93 (MQ=255)
tCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAACCTg > 1:5665204/1‑93 (MQ=255)
cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc < 2:1063657/93‑1 (MQ=255)
cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc < 1:5713762/93‑1 (MQ=255)
cACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgc < 1:365537/93‑1 (MQ=255)
aCGCTGCTCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTgcc > 1:1263135/1‑93 (MQ=255)
tGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCt > 2:1575424/1‑93 (MQ=255)
tGCGCATGCCGATCTGCTTAGATGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCt < 1:4389291/93‑1 (MQ=255)
gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg < 2:3278062/93‑1 (MQ=255)
gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg > 2:6742760/1‑93 (MQ=255)
gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg < 1:5772276/93‑1 (MQ=255)
gcgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTg < 1:504978/93‑1 (MQ=255)
cgcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTgg < 2:6478546/93‑1 (MQ=255)
gcATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGc > 2:3375264/1‑93 (MQ=255)
aTGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCaa > 2:7687321/1‑93 (MQ=255)
gCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTGCAGCAAGCCTGCCGCCTGGCaaaa > 2:4094682/1‑93 (MQ=255)
cGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATa < 2:1105200/93‑1 (MQ=255)
gATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATaa > 1:1054298/1‑93 (MQ=255)
aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCCC‑C‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc > 2:6856017/1‑93 (MQ=255)
aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc > 1:2930805/1‑93 (MQ=255)
aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc > 2:1307484/1‑93 (MQ=255)
aTCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc < 2:1469296/93‑1 (MQ=255)
aTCTGCTCAGCTGGTTTAAAGGGAACGCTCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAc < 1:2529600/93‑1 (MQ=255)
tCTGCTTAGCTGGTTTAAAGGGACCGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc < 2:3116245/93‑1 (MQ=255)
tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAccc > 2:4628392/1‑93 (MQ=255)
tCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAcc > 2:4756338/1‑93 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt < 1:5562840/93‑1 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt > 1:1677250/1‑93 (MQ=255)
cTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCt > 2:7492914/1‑93 (MQ=255)
tGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTg > 2:7771312/1‑93 (MQ=255)
tGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTg > 2:3669139/1‑93 (MQ=255)
tGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTg < 1:6057584/93‑1 (MQ=255)
gCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGc > 2:1536568/1‑93 (MQ=255)
cTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGcc > 1:6522278/1‑93 (MQ=255)
ttAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCa > 1:7490902/1‑93 (MQ=255)
tAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCAc < 1:4114795/93‑1 (MQ=255)
gCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTg < 2:2431153/93‑1 (MQ=255)
gCTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTg > 1:3811834/1‑93 (MQ=255)
cTGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGa < 2:2296217/93‑1 (MQ=255)
tGGTTTAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAc > 1:5279478/1‑93 (MQ=255)
gggTTTAAAGGGACAGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAc < 1:7147553/92‑1 (MQ=255)
ttAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCca > 2:7607684/1‑93 (MQ=255)
tAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcag > 1:1298215/1‑93 (MQ=255)
tAAAGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcag > 2:5463786/1‑93 (MQ=255)
aaaGGGAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagc > 2:1213051/1‑93 (MQ=255)
aaGGGACCGACCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCcagca < 2:7624071/93‑1 (MQ=255)
gggAACGATCGCCCC‑CCGGCC‑CCCCGCCTGAAAAGCGGTGGAGTTCAGCAGGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGa < 1:3180431/93‑1 (MQ=255)
ggAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAt < 2:6444720/93‑1 (MQ=255)
gAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATa < 1:3486911/93‑1 (MQ=255)
gAACGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATa < 1:7910965/93‑1 (MQ=255)
aaCGACCGCCCC‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATaa < 2:5739818/93‑1 (MQ=255)
aCGATCGCCGG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATaaa < 2:2034412/93‑1 (MQ=255)
cGATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAg < 1:4865369/93‑1 (MQ=255)
cGATCGCCCG‑CCCG‑CACCCCGCCGGAAAAGCGCTGGAGGTCAGCAAGCCTGCCACCTGGCAAAATAACCAGCCACTGAAGCCAGCAGATAAAg > 2:5654849/1‑93 (MQ=255)
gATCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGt < 2:2284720/93‑1 (MQ=255)
aTCGCCCG‑CCCGCC‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGtt > 1:3027343/1‑93 (MQ=255)
ccgcccg‑cccgcc‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGttt < 1:6364170/92‑1 (MQ=255)
ccgcccc‑cccgcc‑ccccGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGttt < 2:7223492/92‑1 (MQ=255)
gcccg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTcc < 1:4219088/93‑1 (MQ=255)
cccg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCg > 2:2936087/1‑93 (MQ=255)
ccg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCgg > 1:874099/1‑93 (MQ=255)
ccg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCgg < 2:5879732/93‑1 (MQ=255)
ccg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCgg > 2:3000733/1‑93 (MQ=255)
cg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGt > 2:3371606/1‑93 (MQ=255)
cg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGt > 2:2610370/1‑93 (MQ=255)
cg‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGt > 1:667975/1‑93 (MQ=255)
g‑cccgcc‑cCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGtt < 1:7320709/93‑1 (MQ=255)
|
AAGCACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCG‑CCCG‑C‑CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTT > NC_000913/2037579‑2037758
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC > NC_000913/2037583‑2037769
|
ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCC < SRR4302543.3072475/94‑1 (MQ=60)
CTGGGCATCAGTGCAACTGCCCTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCC < SRR4302543.1276732/94‑1 (MQ=60)
CTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCC > SRR4302543.1429417/1‑94 (MQ=60)
CTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCC > SRR4302543.3703051/1‑94 (MQ=60)
CTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCC > SRR4302543.2304969/1‑94 (MQ=60)
ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGA > SRR4302543.719335/1‑94 (MQ=60)
ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGA > SRR4302543.2905754/1‑94 (MQ=60)
ATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGA > SRR4302543.7162039/1‑94 (MQ=60)
AGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAA > SRR4302543.1396418/1‑94 (MQ=60)
GTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAG > SRR4302543.4267277/1‑94 (MQ=60)
CAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGC > SRR4302543.5267511/1‑94 (MQ=60)
AACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCT < SRR4302543.7104708/94‑1 (MQ=60)
AACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCT > SRR4302543.4029860/1‑94 (MQ=60)
ACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTG < SRR4302543.954964/94‑1 (MQ=60)
ACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTG > SRR4302543.2406940/1‑94 (MQ=60)
ACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTG > SRR4302543.7173230/1‑94 (MQ=60)
TGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGA > SRR4302543.4458489/1‑94 (MQ=60)
TGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGA > SRR4302543.2720824/1‑94 (MQ=60)
TGCACTTTCTTTGCCTCACGCTACGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGA < SRR4302543.7065372/94‑1 (MQ=60)
GCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAG < SRR4302543.691688/94‑1 (MQ=60)
CACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGT > SRR4302543.5212862/1‑94 (MQ=60)
CACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGT < SRR4302543.71010/94‑1 (MQ=60)
ACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTT < SRR4302543.607509/94‑1 (MQ=60)
TTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAG < SRR4302543.3663958/94‑1 (MQ=60)
TCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGC > SRR4302543.5432006/1‑94 (MQ=60)
CTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCA < SRR4302543.7643667/94‑1 (MQ=60)
TTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGGTCAGCAA > SRR4302543.5450624/1‑94 (MQ=60)
CCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT < SRR4302543.644875/94‑1 (MQ=60)
CCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT < SRR4302543.5938635/94‑1 (MQ=60)
CCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCT > SRR4302543.253779/1‑94 (MQ=60)
CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTG > SRR4302543.159705/1‑94 (MQ=60)
CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTG > SRR4302543.5461754/1‑94 (MQ=60)
CTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAACCTG > SRR4302543.5716885/1‑94 (MQ=60)
TCACGCTGCGCATGCCGATCTCCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGC < SRR4302543.4035392/94‑1 (MQ=60)
CACGCTGCTCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC > SRR4302543.1274443/1‑94 (MQ=60)
CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC < SRR4302543.368919/94‑1 (MQ=60)
CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC < SRR4302543.368920/94‑1 (MQ=60)
CACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCC < SRR4302543.5765893/94‑1 (MQ=60)
TGCGCATGCCGATCTGCTTAGATGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTG < SRR4302543.4429082/94‑1 (MQ=60)
GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG < SRR4302543.5330895/94‑1 (MQ=60)
GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG < SRR4302543.509671/94‑1 (MQ=60)
GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG < SRR4302543.5824823/94‑1 (MQ=60)
GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG < SRR4302543.4918679/94‑1 (MQ=60)
GCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGG < SRR4302543.7248707/94‑1 (MQ=60)
CGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGC > SRR4302543.7453093/1‑94 (MQ=60)
CATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAA > SRR4302543.3862213/1‑94 (MQ=60)
ATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAA < SRR4302543.840541/94‑1 (MQ=60)
CGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAA > SRR4302543.1063753/1‑94 (MQ=60)
GATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAC > SRR4302543.2957422/1‑94 (MQ=60)
GATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAAC > SRR4302543.6570509/1‑94 (MQ=60)
ATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACC < SRR4302543.557396/94‑1 (MQ=60)
ATCTGCTCAGCTGGTTTAAAGGGAACGCTCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACC < SRR4302543.2552616/94‑1 (MQ=60)
TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT > SRR4302543.7960056/1‑94 (MQ=60)
TCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCT > SRR4302543.1692286/1‑94 (MQ=60)
CTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTG < SRR4302543.1632500/94‑1 (MQ=60)
CTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTG < SRR4302543.5613435/94‑1 (MQ=60)
TGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGC < SRR4302543.6114929/94‑1 (MQ=60)
GCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCC > SRR4302543.6583696/1‑94 (MQ=60)
CTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCA > SRR4302543.7562569/1‑94 (MQ=60)
CTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCA > SRR4302543.6353824/1‑94 (MQ=60)
TAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACT > SRR4302543.1317682/1‑94 (MQ=60)
TAGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACT < SRR4302543.4151860/94‑1 (MQ=60)
TAGCGGGTTTAAAGGGACCGATCGCCCGCCGGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACT < SRR4302543.5130044/94‑1 (MQ=60)
AGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTG < SRR4302543.7564819/94‑1 (MQ=60)
AGCTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTG > SRR4302543.3845435/1‑94 (MQ=60)
CTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAC > SRR4302543.5327117/1‑94 (MQ=60)
CTGGTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGAC < SRR4302543.5781105/94‑1 (MQ=60)
GGGTTTAAAGGGACAGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACG < SRR4302543.7217026/94‑1 (MQ=60)
GTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCC > SRR4302543.2975729/1‑94 (MQ=60)
GTTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCC > SRR4302543.5883297/1‑94 (MQ=60)
TTTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCA > SRR4302543.5740598/1‑94 (MQ=60)
TTAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAG > SRR4302543.1309753/1‑94 (MQ=60)
TAAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGC < SRR4302543.6440550/94‑1 (MQ=60)
AAAGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCA > SRR4302543.3741394/1‑94 (MQ=60)
AGGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGA < SRR4302543.70141/94‑1 (MQ=60)
GGGAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAA > SRR4302543.6673901/1‑94 (MQ=60)
GGGAACGATCGCCC‑CCCGGCCCCCCGCCTGAAAAGCGGTGGAGTTCAGCAGGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGAT < SRR4302543.3209107/94‑1 (MQ=60)
GAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAA < SRR4302543.7985290/94‑1 (MQ=60)
GAACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAA < SRR4302543.3518131/94‑1 (MQ=60)
AACGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCAGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAA > SRR4302543.5630492/1‑94 (MQ=60)
CGATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGT < SRR4302543.4909720/94‑1 (MQ=60)
CGATCCCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGT < SRR4302543.6867057/94‑1 (MQ=60)
GATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTT > SRR4302543.3054692/1‑94 (MQ=60)
ATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAATCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTC > SRR4302543.2365390/1‑94 (MQ=60)
ATCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTT < SRR4302543.1980202/94‑1 (MQ=60)
TCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTC < SRR4302543.2578073/94‑1 (MQ=60)
CCGCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTC < SRR4302543.6424015/94‑1 (MQ=60)
GCCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCG < SRR4302543.4257338/94‑1 (MQ=60)
CCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG > SRR4302543.881882/1‑94 (MQ=60)
CCCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGG < SRR4302543.4199280/94‑1 (MQ=60)
CCGCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGT > SRR4302543.674124/1‑94 (MQ=60)
GCCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTA < SRR4302543.7391220/94‑1 (MQ=60)
CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTAT < SRR4302543.1745924/94‑1 (MQ=60)
CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTAT < SRR4302543.2273025/94‑1 (MQ=60)
CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTAT > SRR4302543.7226878/1‑94 (MQ=60)
CCCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTAT < SRR4302543.7296480/94‑1 (MQ=60)
CCGC‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATACCCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATA < SRR4302543.6387188/94‑1 (MQ=60)
cgcCCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAA < SRR4302543.6589882/91‑1 (MQ=60)
C‑‑CCCCCGCGGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATA < SRR4302543.3916784/94‑1 (MQ=60)
C‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATA > SRR4302543.863355/1‑94 (MQ=60)
C‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATA < SRR4302543.7884975/94‑1 (MQ=60)
C‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATA < SRR4302543.7783296/94‑1 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCACAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGactctcagaa > SRR4302543.1916423/1‑84 (MQ=60)
CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAA > SRR4302543.7120743/1‑94 (MQ=60)
CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAAC > SRR4302543.2991796/1‑94 (MQ=60)
CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAAC < SRR4302543.5587844/94‑1 (MQ=60)
CCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAAC > SRR4302543.6400703/1‑94 (MQ=60)
CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTT < SRR4302543.1521917/94‑1 (MQ=60)
CCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTT < SRR4302543.896159/94‑1 (MQ=60)
CGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC > SRR4302543.730406/1‑94 (MQ=60)
CGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC < SRR4302543.2062514/94‑1 (MQ=60)
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ACTGGGCATCAGTGCAACTGCACTTTCTTTGCCTCACGCTGCGCATGCCGATCTGCTTAGCTGGTTTAAAGGGAACGATCGCCCGCCCG‑‑CCCCCGCCGGAAAAGCGCTGGAGTTCAGCAAGCCTGCCGCCTGGCAAAATAACCTGCCACTGACGCCAGCAGATAAAGTTTCCGGTTATAATAACTTC > NC_000913/2037583‑2037769
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
