Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,537,405 +GC intergenic (+61/‑394) b3407 → / → feoA hypothetical protein/ferrous iron transport protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,537,4041.C99.7% 975.4 / ‑5.3 316intergenic (+60/‑395)b3407/feoAhypothetical protein/ferrous iron transport protein A
Reads supporting (aligned to +/- strand):  ref base . (0/0);  major base C (159/156);  minor base T (1/0);  total (160/156)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.30e-01
*NC_0009133,537,4042.G100.0% 991.2 / NA 318intergenic (+60/‑395)b3407/feoAhypothetical protein/ferrous iron transport protein A
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (160/158);  total (160/158)

Only 100 of 344 total aligned reads displayed.

GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA  >  NC_000913/3537312‑3537487
                                                                                             ||                                                                                   
gcgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCa                                                                                       <  1:17203/93‑1 (MQ=255)
 cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑c                                                                                    >  1:6555559/1‑93 (MQ=255)
 cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑c                                                                                    <  1:619757/93‑1 (MQ=255)
  gcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cg                                                                                   >  1:5864902/1‑92 (MQ=255)
   cTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCGACGGTGCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgc                                                                                  <  2:853829/93‑3 (MQ=255)
    tGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgcc                                                                                 <  2:1410499/93‑4 (MQ=255)
    tGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑cgcc                                                                                 >  2:1969184/1‑90 (MQ=255)
            gcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTgg                                                                           <  1:4394881/93‑1 (MQ=38)
            gcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTgg                                                                           >  2:4846586/1‑93 (MQ=38)
              aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCa                                                                         >  1:986726/1‑93 (MQ=37)
              aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCa                                                                         >  1:3621816/1‑93 (MQ=37)
              aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCa                                                                         >  2:2709113/1‑93 (MQ=37)
               aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaa                                                                        <  1:1056887/93‑1 (MQ=38)
                 gggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacg                                                                      <  2:3092415/93‑1 (MQ=37)
                  ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacga                                                                     >  1:5344724/1‑93 (MQ=37)
                  ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacga                                                                     <  1:1989284/93‑1 (MQ=37)
                   gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacgaa                                                                    <  1:1646019/93‑1 (MQ=37)
                   gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacgaa                                                                    <  1:2213543/93‑1 (MQ=37)
                   gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacgaa                                                                    <  1:3548396/93‑1 (MQ=38)
                     aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacgaacg                                                                  >  1:6980270/1‑93 (MQ=37)
                     aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCaacgaacg                                                                  >  1:6042427/1‑93 (MQ=37)
                      aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGc                                                                 >  2:6446618/1‑93 (MQ=37)
                      aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGc                                                                 >  1:4325511/1‑93 (MQ=37)
                      aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGc                                                                 >  2:7910033/1‑93 (MQ=37)
                      aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGc                                                                 <  1:6625772/93‑1 (MQ=37)
                       aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGcc                                                                >  1:2354512/1‑93 (MQ=37)
                       aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGcc                                                                <  2:4592586/93‑1 (MQ=37)
                        aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCt                                                               <  2:1701476/93‑1 (MQ=37)
                        aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCt                                                               <  1:7437486/93‑1 (MQ=37)
                        aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCt                                                               <  1:4884965/93‑1 (MQ=37)
                         aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCtt                                                              >  2:5417553/1‑93 (MQ=37)
                          aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                             >  1:4653355/1‑93 (MQ=37)
                               aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGa                                                        >  2:5360466/1‑93 (MQ=37)
                                aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAc                                                       >  1:7562454/1‑93 (MQ=38)
                                     ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa                                                  >  2:3003830/1‑93 (MQ=37)
                                      cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa                                                 <  1:5511305/93‑1 (MQ=37)
                                      cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa                                                 <  2:640696/93‑1 (MQ=37)
                                       gtgcTGGCCTAGGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                <  2:5852429/90‑1 (MQ=25)
                                       gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTTGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                >  1:3308941/1‑93 (MQ=38)
                                       gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                <  1:3489154/93‑1 (MQ=37)
                                        tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt                                               >  2:1291100/1‑93 (MQ=37)
                                        tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt                                               >  1:7117809/1‑93 (MQ=37)
                                        tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt                                               >  1:1219533/1‑93 (MQ=38)
                                         aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                              >  1:5682833/1‑93 (MQ=37)
                                          cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCATGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc                                             >  1:1596339/1‑93 (MQ=38)
                                          cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc                                             <  2:3763458/93‑1 (MQ=37)
                                           tGGCGTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                            <  2:7606551/93‑1 (MQ=37)
                                           tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                            <  1:7207358/93‑1 (MQ=37)
                                           tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                            >  2:2599316/1‑93 (MQ=37)
                                              ccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga                                         >  1:195972/1‑93 (MQ=38)
                                              ccTACGATTCTATTTAGATCGAAATCGTAGGTCAGATAAGGGGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCTGga                                         <  2:2288104/93‑1 (MQ=16)
                                               gtACGGTTCTAATTTGCACGAAATCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaa                                        <  1:3900550/92‑2 (MQ=25)
                                               cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag                                        >  2:6598227/1‑93 (MQ=38)
                                                tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga                                       <  1:6401575/93‑1 (MQ=37)
                                                tACGATTCAAATTTCCAGAAAACCGTGGGCAAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga                                       <  1:2851403/93‑1 (MQ=16)
                                                 aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                      <  2:2755562/93‑1 (MQ=37)
                                                   ggTTCGATTTTGCACAAAATCGTAGGGCAAATAAGGCTTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata                                    <  1:1452375/93‑1 (MQ=37)
                                                   ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata                                    <  2:1203689/93‑1 (MQ=37)
                                                   ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata                                    <  2:572144/93‑1 (MQ=37)
                                                    gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                   <  1:2649201/93‑1 (MQ=37)
                                                    gTTCGAATTTGAGCGAAATCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                   <  2:3544635/93‑1 (MQ=25)
                                                      tCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct                                 <  2:5864903/93‑1 (MQ=37)
                                                       cGAATTTGCACGAAATCGTAGGACAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc                                <  2:666326/93‑1 (MQ=37)
                                                        gAATTTGCACTAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                               <  1:6809232/93‑1 (MQ=37)
                                                        gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                               >  1:5001150/1‑93 (MQ=38)
                                                        gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                               >  2:736286/1‑93 (MQ=38)
                                                        gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                               <  1:3195411/93‑1 (MQ=37)
                                                        gAATTTGCACGAAATCGTAGGGAAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc                               <  2:7248129/93‑1 (MQ=37)
                                                         aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg                              >  1:5426427/1‑93 (MQ=38)
                                                         aaTTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg                              <  1:1905796/93‑1 (MQ=37)
                                                            ttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa                           <  1:865300/93‑1 (MQ=38)
                                                            ttGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa                           <  2:2127149/93‑1 (MQ=38)
                                                              ccACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCTTCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt                         <  2:3143337/92‑1 (MQ=37)
                                                                acaaaaaCGAAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGTCATAAAAGTGCCGGAGAATATCTCCGGCAtttt                       <  2:1068843/90‑1 (MQ=25)
                                                                  gAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa                     <  1:7273119/93‑1 (MQ=38)
                                                                  gAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa                     <  1:2583088/93‑1 (MQ=38)
                                                                  gAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa                     <  1:3453013/93‑1 (MQ=38)
                                                                   aaaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt                    <  2:4726284/93‑1 (MQ=38)
                                                                    aaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAtt                   <  1:5971393/93‑1 (MQ=38)
                                                                      tCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGGGAAGATTTTCGGCGtttttttttc                 >  2:4215862/1‑91 (MQ=21)
                                                                      tCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc                 >  2:7055932/1‑93 (MQ=38)
                                                                       cGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCca                <  1:79084/93‑1 (MQ=38)
                                                                        gTAGGTCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac               <  2:515913/93‑1 (MQ=37)
                                                                        gTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac               <  1:5125758/93‑1 (MQ=38)
                                                                         tAGGGTAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca              <  1:774988/93‑1 (MQ=38)
                                                                         tAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca              >  1:2756653/1‑93 (MQ=38)
                                                                         tAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca              <  1:3417226/93‑1 (MQ=38)
                                                                           gggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGc            >  1:2995583/1‑93 (MQ=38)
                                                                             gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa          <  2:6047286/93‑1 (MQ=38)
                                                                             gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa          <  1:5290203/93‑1 (MQ=38)
                                                                              cAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaa         >  2:2174355/1‑93 (MQ=38)
                                                                               aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa        >  2:3379789/1‑93 (MQ=38)
                                                                               aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa        <  2:5515696/93‑1 (MQ=38)
                                                                               aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAAATAAAAGTACCGGCGAAAAACTCCGGCATTTTTATTTCACAACCaaa        >  2:6915384/1‑93 (MQ=21)
                                                                                gATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc       >  2:596160/1‑93 (MQ=39)
                                                                                  tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc     >  1:4086762/1‑93 (MQ=39)
                                                                                  tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc     >  1:632314/1‑93 (MQ=39)
                                                                                  tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc     >  1:647447/1‑93 (MQ=39)
                                                                                    aGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat   >  2:4410868/1‑93 (MQ=255)
                                                                                     ggCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCata  <  1:1795599/93‑1 (MQ=39)
                                                                                             ||                                                                                   
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA  >  NC_000913/3537312‑3537487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 228 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG  >  NC_000913/3537312‑3537498
                                                                                               |                                                                                             
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C                                                                                               >  SRR4302543.6617249/1‑94 (MQ=60)
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑C                                                                                               <  SRR4302543.17362/94‑1 (MQ=60)
 CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CG                                                                                              <  SRR4302543.625431/94‑1 (MQ=60)
 CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CG                                                                                              >  SRR4302543.5918291/1‑94 (MQ=60)
 CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTC‑‑‑CCG                                                                                             >  SRR4302543.5918293/1‑94 (MQ=60)
 CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGAGAAGGCGTCCA‑‑CC                                                                                              >  SRR4302543.5918292/1‑94 (MQ=60)
  GCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgc                                                                                             <  SRR4302543.5851826/94‑3 (MQ=60)
   CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgcc                                                                                            >  SRR4302543.2672516/1‑91 (MQ=60)
   CTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgcc                                                                                            >  SRR4302543.4977069/1‑91 (MQ=60)
    TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgccg                                                                                           >  SRR4302543.2017644/1‑90 (MQ=60)
    TGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑Cgccg                                                                                           >  SRR4302543.6676816/1‑90 (MQ=60)
      GCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCA                                                                                           >  SRR4302543.7118610/1‑94 (MQ=60)
      GCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCA                                                                                           >  SRR4302543.6094124/1‑94 (MQ=60)
      GCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCA                                                                                           >  SRR4302543.3228068/1‑94 (MQ=60)
      GCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCA                                                                                           >  SRR4302543.3035308/1‑94 (MQ=60)
       CGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCAT                                                                                          <  SRR4302543.1637773/94‑1 (MQ=60)
          CGGCAATGGGTAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTG                                                                                       >  SRR4302543.6145713/1‑94 (MQ=60)
           GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGG                                                                                      >  SRR4302543.7140221/1‑94 (MQ=60)
           GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGG                                                                                      >  SRR4302543.2682409/1‑94 (MQ=60)
           GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGC                                                                                      >  SRR4302543.1698107/1‑94 (MQ=60)
            GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGC                                                                                     <  SRR4302543.4434728/94‑1 (MQ=60)
            GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGC                                                                                     >  SRR4302543.1857425/1‑94 (MQ=60)
             CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA                                                                                    >  SRR4302543.4364634/1‑94 (MQ=60)
             CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA                                                                                    >  SRR4302543.3653728/1‑94 (MQ=60)
             CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCA                                                                                    >  SRR4302543.1795585/1‑94 (MQ=60)
              AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAA                                                                                   >  SRR4302543.389136/1‑94 (MQ=60)
               ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAAC                                                                                  <  SRR4302543.1066371/94‑1 (MQ=60)
               ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAAC                                                                                  >  SRR4302543.6727563/1‑94 (MQ=60)
               ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAAC                                                                                  >  SRR4302543.3603648/1‑94 (MQ=60)
                TGGGCAAAAAACTTTAAACGCCCGTACTGGCTTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACG                                                                                 <  SRR4302543.4585346/94‑1 (MQ=60)
                TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCCGGCAACG                                                                                 <  SRR4302543.4011762/94‑1 (MQ=60)
                 GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGA                                                                                <  SRR4302543.6454873/94‑1 (MQ=60)
                 GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGA                                                                                >  SRR4302543.5393084/1‑94 (MQ=60)
                 GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGAAGATAAGGCGTTCACGCCGCATCTGGCAAGGA                                                                                >  SRR4302543.2796353/1‑94 (MQ=60)
                  GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAA                                                                               <  SRR4302543.2007112/94‑1 (MQ=60)
                  GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAA                                                                               <  SRR4302543.2289772/94‑1 (MQ=60)
                  GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAA                                                                               <  SRR4302543.2473894/94‑1 (MQ=60)
                   GCAAAAAGCGTTAAACGCCCGTACTGGCCTACGGTTCAAATTTGCCCGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC                                                                              <  SRR4302543.61050/94‑1 (MQ=60)
                   GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC                                                                              <  SRR4302543.3579887/94‑1 (MQ=60)
                   GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC                                                                              <  SRR4302543.2233491/94‑1 (MQ=60)
                   GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAC                                                                              <  SRR4302543.3369915/94‑1 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             <  SRR4302543.4530962/94‑1 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             >  SRR4302543.7045961/1‑94 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             <  SRR4302543.7198834/94‑1 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             >  SRR4302543.701294/1‑94 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             >  SRR4302543.6099615/1‑94 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             >  SRR4302543.6099616/1‑94 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACG                                                                             >  SRR4302543.6272025/1‑94 (MQ=60)
                    CAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTCGCAACGAACG                                                                             >  SRR4302543.4476529/1‑94 (MQ=60)
                     AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGC                                                                            <  SRR4302543.2412677/94‑1 (MQ=60)
                     AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGC                                                                            >  SRR4302543.4364782/1‑94 (MQ=60)
                     AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGC                                                                            >  SRR4302543.1989437/1‑94 (MQ=60)
                      AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC                                                                           >  SRR4302543.2375863/1‑94 (MQ=60)
                      AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCC                                                                           <  SRR4302543.6688258/94‑1 (MQ=60)
                       AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCTTCTGGCAACGAACGCCT                                                                          >  SRR4302543.7098625/1‑94 (MQ=60)
                       AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCT                                                                          <  SRR4302543.3493920/94‑1 (MQ=60)
                        AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTT                                                                         <  SRR4302543.4929496/94‑1 (MQ=60)
                        AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTT                                                                         <  SRR4302543.7508780/94‑1 (MQ=60)
                         AACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTG                                                                        >  SRR4302543.4695725/1‑94 (MQ=60)
                          ACGTTAAACGCCCGTACTGGCCTAGGGTTCGAATTTGCACGAAATCGTAGGGAAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGC                                                                       <  SRR4302543.2974768/94‑1 (MQ=60)
                             TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTG                                                                    >  SRR4302543.6984886/1‑94 (MQ=60)
                               AAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAC                                                                  >  SRR4302543.7634434/1‑94 (MQ=60)
                                AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACA                                                                 >  SRR4302543.6476153/1‑94 (MQ=60)
                                AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGCTCACGCCGCATCTTGCAACGAACGCCTTGCCTGACA                                                                 >  SRR4302543.5658824/1‑94 (MQ=60)
                                   GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAA                                                              >  SRR4302543.4892203/1‑94 (MQ=60)
                                   GCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAA                                                              >  SRR4302543.4938030/1‑94 (MQ=60)
                                    CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA                                                             >  SRR4302543.6408337/1‑94 (MQ=60)
                                     CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA                                                            <  SRR4302543.5526938/94‑1 (MQ=60)
                                     CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA                                                            >  SRR4302543.110126/1‑94 (MQ=60)
                                     CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA                                                            <  SRR4302543.767212/94‑1 (MQ=60)
                                      CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTTGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG                                                           >  SRR4302543.3338806/1‑94 (MQ=60)
                                      CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG                                                           >  SRR4302543.6689216/1‑94 (MQ=60)
                                      CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG                                                           >  SRR4302543.2687990/1‑94 (MQ=60)
                                      CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG                                                           <  SRR4302543.5561347/94‑1 (MQ=60)
                                      CGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAG                                                           <  SRR4302543.7291313/94‑1 (MQ=60)
                                       GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT                                                          <  SRR4302543.3520385/94‑1 (MQ=60)
                                       GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT                                                          <  SRR4302543.5207614/94‑1 (MQ=60)
                                       GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT                                                          >  SRR4302543.1230497/1‑94 (MQ=60)
                                       GGACTGTCCTACGGTCCGAATTTGCAAGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT                                                          <  SRR4302543.5207613/94‑1 (MQ=60)
                                        TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG                                                         >  SRR4302543.5734703/1‑94 (MQ=60)
                                        TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG                                                         <  SRR4302543.3941822/94‑1 (MQ=60)
                                        TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG                                                         >  SRR4302543.5734702/1‑94 (MQ=60)
                                        TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG                                                         <  SRR4302543.1622034/94‑1 (MQ=60)
                                         ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCATGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC                                                        >  SRR4302543.1610583/1‑94 (MQ=60)
                                         ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGGTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC                                                        >  SRR4302543.3310996/1‑94 (MQ=60)
                                         ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGGTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC                                                        >  SRR4302543.192124/1‑94 (MQ=60)
                                          CTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCC                                                       >  SRR4302543.7289718/1‑94 (MQ=60)
                                          CTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCC                                                       >  SRR4302543.7364525/1‑94 (MQ=60)
                                           TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG                                                      <  SRR4302543.7277232/94‑1 (MQ=60)
                                            GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGG                                                     <  SRR4302543.3822062/94‑1 (MQ=60)
                                             GCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGA                                                    >  SRR4302543.197629/1‑94 (MQ=60)
                                              CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAG                                                   >  SRR4302543.1512592/1‑94 (MQ=60)
                                               GTACGGTTCTAATTTGCACGAAATCGTAGGTCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAAA                                                  <  SRR4302543.3934989/94‑1 (MQ=60)
                                               CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA                                                  <  SRR4302543.6554001/94‑1 (MQ=60)
                                               CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA                                                  >  SRR4302543.7191234/1‑94 (MQ=60)
                                               CTACGGTGCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA                                                  <  SRR4302543.6554002/94‑1 (MQ=60)
                                                tacgattcaaatttccagaaaaccgtgggcaAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA                                                 <  SRR4302543.2877425/63‑1 (MQ=60)
                                                TGCGGTTAGAATTTGCCCGAGAGCGTAGGTCAGATAAGGCTTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA                                                 <  SRR4302543.6566800/94‑1 (MQ=60)
                                                 ACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAAT                                                >  SRR4302543.895464/1‑94 (MQ=60)
                                                 ACGGTTCGAATTTGCACGAAAGCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAAT                                                <  SRR4302543.7117465/94‑1 (MQ=60)
                                                  CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA                                               >  SRR4302543.1745340/1‑94 (MQ=60)
                                                   GGTTCGATTTTGCACAAAATCGTAGGGCAAATAAGGCTTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT                                              <  SRR4302543.1465488/94‑1 (MQ=60)
                                                    gtgtGAATTTGCACAAAATCGAAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC                                             <  SRR4302543.5721684/90‑1 (MQ=60)
                                                    GTTCGAATTTGCATGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC                                             >  SRR4302543.4388096/1‑94 (MQ=60)
                                                    GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC                                             >  SRR4302543.6358091/1‑94 (MQ=60)
                                                    GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC                                             <  SRR4302543.2673218/94‑1 (MQ=60)
                                                     TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATACAAGTGCCGGAGAATATAT                                            >  SRR4302543.3226006/1‑94 (MQ=60)
                                                      TCTAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTC                                           <  SRR4302543.5940479/94‑1 (MQ=60)
                                                       CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC                                          >  SRR4302543.5046671/1‑94 (MQ=60)
                                                       CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC                                          >  SRR4302543.3564481/1‑94 (MQ=60)
                                                       CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC                                          <  SRR4302543.4633775/94‑1 (MQ=60)
                                                        GAATTTGCACTAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.6873521/94‑1 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTTCCTGACATAAAAGCGCGGGAGAATATCTACG                                         >  SRR4302543.1328525/1‑94 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.5379555/94‑1 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.5379556/94‑1 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.7686824/94‑1 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.3594620/94‑1 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         >  SRR4302543.1328526/1‑94 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         >  SRR4302543.5475743/1‑94 (MQ=60)
                                                        GAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCG                                         <  SRR4302543.3224217/94‑1 (MQ=60)
                                                         AATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGG                                        <  SRR4302543.1922958/94‑1 (MQ=60)
                                                          ATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC                                       >  SRR4302543.5513959/1‑94 (MQ=60)
                                                          ATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC                                       >  SRR4302543.7572338/1‑94 (MQ=60)
                                                          ATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGC                                       >  SRR4302543.3113225/1‑94 (MQ=60)
                                                           TTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCA                                      >  SRR4302543.830195/1‑94 (MQ=60)
                                                            TTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT                                     <  SRR4302543.873035/94‑1 (MQ=60)
                                                            TTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT                                     <  SRR4302543.7502963/94‑1 (MQ=60)
                                                              GCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTT                                   <  SRR4302543.4041471/94‑1 (MQ=60)
                                                                CCGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT                                 <  SRR4302543.2149946/94‑1 (MQ=60)
                                                                ACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT                                 >  SRR4302543.1117564/1‑94 (MQ=60)
                                                                ACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTT                                 <  SRR4302543.1647818/94‑1 (MQ=60)
                                                                 CGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTA                                <  SRR4302543.2599910/94‑1 (MQ=60)
                                                                  GAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT                               <  SRR4302543.7312566/94‑1 (MQ=60)
                                                                  GAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT                               <  SRR4302543.1973052/94‑1 (MQ=60)
                                                                  GAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT                               <  SRR4302543.2606591/94‑1 (MQ=60)
                                                                  GAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT                               <  SRR4302543.3483936/94‑1 (MQ=60)
                                                                    AATCGTAGGGCAGATAAGGCTTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC                             <  SRR4302543.6026083/94‑1 (MQ=60)
                                                                    AATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC                             <  SRR4302543.6026082/94‑1 (MQ=60)
                                                                    AATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC                             >  SRR4302543.2136464/1‑94 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            >  SRR4302543.3475501/1‑94 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            <  SRR4302543.4931758/94‑1 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            <  SRR4302543.6703757/94‑1 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            >  SRR4302543.7983839/1‑94 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            >  SRR4302543.2776810/1‑94 (MQ=60)
                                                                     ATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC                            >  SRR4302543.4148052/1‑94 (MQ=60)
                                                                       CGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCAC                          >  SRR4302543.1720542/1‑94 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         <  SRR4302543.1727915/94‑1 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         <  SRR4302543.5172097/94‑1 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         <  SRR4302543.5172096/94‑1 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         >  SRR4302543.2781730/1‑94 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         >  SRR4302543.6481643/1‑94 (MQ=60)
                                                                        GTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA                         <  SRR4302543.7597630/94‑1 (MQ=60)
                                                                         TAGGGTAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG                        <  SRR4302543.781796/94‑1 (MQ=60)
                                                                         TAGGGGAGATAAGGCGCTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG                        <  SRR4302543.3447811/94‑1 (MQ=60)
                                                                         TAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG                        <  SRR4302543.3447812/94‑1 (MQ=60)
                                                                         TAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG                        <  SRR4302543.3447813/94‑1 (MQ=60)
                                                                         TAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG                        <  SRR4302543.3496123/94‑1 (MQ=60)
                                                                          AGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGC                       >  SRR4302543.3022762/1‑94 (MQ=60)
                                                                           GGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC                      >  SRR4302543.991055/1‑94 (MQ=60)
                                                                           GGGCAAATAAGGCGTTCACGCCGCATCTGGCAACGAACTCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCC                      <  SRR4302543.1539447/94‑1 (MQ=60)
                                                                               AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGGCGGAGAATATCTCCGGCATTTTTATTTTACAGCCAAAC                  >  SRR4302543.2895799/1‑94 (MQ=60)
                                                                               AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTTCACAGCCAAAC                  >  SRR4302543.2895800/1‑94 (MQ=60)
                                                                               AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC                  >  SRR4302543.7998603/1‑94 (MQ=60)
                                                                               AGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC                  >  SRR4302543.353154/1‑94 (MQ=60)
                                                                                GATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT                 >  SRR4302543.7867806/1‑94 (MQ=60)
                                                                                 ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC                >  SRR4302543.653364/1‑94 (MQ=60)
                                                                                 ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC                >  SRR4302543.638090/1‑94 (MQ=60)
                                                                                 ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC                <  SRR4302543.5427519/94‑1 (MQ=60)
                                                                                 ATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC                >  SRR4302543.4123404/1‑94 (MQ=60)
                                                                                 ATAAGGCGTGCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC                <  SRR4302543.5427518/94‑1 (MQ=60)
                                                                                   aaagctgtccgtCCGCATCTGGCAACTAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGACATTTTTATTCCACAGCCAAACTCAT              <  SRR4302543.6798719/82‑1 (MQ=60)
                                                                                   AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT              <  SRR4302543.7982694/94‑1 (MQ=60)
                                                                                   AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT              >  SRR4302543.1942517/1‑94 (MQ=60)
                                                                                    AGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA             >  SRR4302543.3618416/1‑94 (MQ=60)
                                                                                     ggctttcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA            <  SRR4302543.114054/84‑1 (MQ=60)
                                                                                     GGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA            <  SRR4302543.1811674/94‑1 (MQ=60)
                                                                                     GGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA            <  SRR4302543.5209975/94‑1 (MQ=60)
                                                                                     GGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA            >  SRR4302543.7710885/1‑94 (MQ=60)
                                                                                      GCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT           <  SRR4302543.7483725/94‑1 (MQ=60)
                                                                                      GCGTTCACGCCGCATCTGGCAACGAACGCCTTGACTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATACT           >  SRR4302543.5243298/1‑94 (MQ=60)
                                                                                       cgtgcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA          <  SRR4302543.5694358/86‑1 (MQ=60)
                                                                                       CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATA          >  SRR4302543.3425621/1‑94 (MQ=60)
                                                                                        GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT         >  SRR4302543.4607551/1‑94 (MQ=60)
                                                                                        GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT         >  SRR4302543.6455162/1‑94 (MQ=60)
                                                                                        GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT         >  SRR4302543.6399004/1‑94 (MQ=60)
                                                                                        GTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT         >  SRR4302543.7886555/1‑94 (MQ=60)
                                                                                          tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT       <  SRR4302543.7282837/89‑1 (MQ=60)
                                                                                          tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT       <  SRR4302543.64279/89‑1 (MQ=60)
                                                                                          tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT       <  SRR4302543.5130728/89‑1 (MQ=60)
                                                                                           cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT      <  SRR4302543.4312789/90‑1 (MQ=60)
                                                                                           cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT      >  SRR4302543.4353828/5‑94 (MQ=60)
                                                                                           cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCCCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT      <  SRR4302543.7724991/90‑1 (MQ=60)
                                                                                            acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC     <  SRR4302543.2120314/91‑1 (MQ=60)
                                                                                            acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC     >  SRR4302543.1859684/4‑94 (MQ=60)
                                                                                            G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCCTTTTTATTTCACCGCCAAACTCATAATATATTCCG   >  SRR4302543.2903329/1‑94 (MQ=60)
                                                                                            G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTTCACAGCCAAACTCATAATATATTCCG   >  SRR4302543.1564438/1‑94 (MQ=60)
                                                                                            G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG   >  SRR4302543.258017/1‑94 (MQ=60)
                                                                                            G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG   >  SRR4302543.6558281/1‑94 (MQ=60)
                                                                                               CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG  <  SRR4302543.4833727/94‑1 (MQ=60)
                                                                                               CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG  <  SRR4302543.4833726/94‑1 (MQ=60)
                                                                                               |                                                                                             
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG  >  NC_000913/3537312‑3537498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑