Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,544,363	+C	coding (169/1314 nt)	gntT →	gluconate permease

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,544,363	1	.	C	100.0%	901.6 / NA	290	V57L (GTC→CTC)	gntT	gluconate permease
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (150/140); total (150/140)

Only 100 of 296 total aligned reads displayed.

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTC‑‑GC‑GGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAA  >  NC_000913/3544283‑3544437

tCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGcc                                                                   <  1:4484396/93‑1 (MQ=255)

tCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGcc                                                                   <  1:1949978/93‑1 (MQ=255)

ccGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGcc                                                                   <  1:3240745/92‑1 (MQ=255)

  gTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCtt                                                                 <  2:6319068/93‑1 (MQ=255)

   tGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTg                                                                <  1:3632127/93‑1 (MQ=255)

   tGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTg                                                                >  2:3902389/1‑93 (MQ=255)

    ggCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGc                                                               >  2:2367301/1‑93 (MQ=255)

     gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGcc                                                              >  2:1241617/1‑93 (MQ=255)

     gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGcc                                                              >  2:5680475/1‑93 (MQ=255)

     gcgcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGcc                                                              >  2:4935779/1‑93 (MQ=255)

      cgcTTGCTGTTGGATTAGTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGccc                                                             <  1:7037318/93‑1 (MQ=255)

       gcTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCt                                                            >  2:202/1‑93 (MQ=255)

         ttGCTGTTGGATTAATGCAAGGAATGCGGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGa                                                          <  1:4871314/93‑1 (MQ=255)

         ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGa                                                          >  1:7536211/1‑93 (MQ=255)

         ttGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGa                                                          <  2:113201/93‑1 (MQ=255)

          tGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGAt                                                         <  1:6521798/93‑1 (MQ=255)

          tGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGAt                                                         >  1:1340980/1‑93 (MQ=255)

           gCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATc                                                        >  1:2982118/1‑93 (MQ=255)

           gCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATc                                                        <  2:5482383/93‑1 (MQ=255)

            cTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCa                                                       >  2:6867796/1‑93 (MQ=255)

             tGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCAt                                                      <  2:3080088/93‑1 (MQ=255)

              gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     <  2:1837916/93‑1 (MQ=255)

              gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     >  1:5561736/1‑93 (MQ=255)

              gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     >  1:3678906/1‑93 (MQ=255)

              gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     <  1:4254638/93‑1 (MQ=255)

              gTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATg                                                     >  2:4351943/1‑93 (MQ=255)

               ttGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATgg                                                    >  1:3123838/1‑93 (MQ=255)

               ttGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATgg                                                    <  2:4210947/93‑1 (MQ=255)

                tGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCGTGGCCTGATCATggg                                                   >  2:6688529/1‑93 (MQ=255)

                 ggATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGt                                                  >  2:4426723/1‑93 (MQ=255)

                  gATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtt                                                 >  1:1143621/1‑93 (MQ=255)

                  gATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtt                                                 >  1:4639337/1‑93 (MQ=255)

                  gATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtt                                                 <  2:3486401/93‑1 (MQ=255)

                    ttAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtttt                                               <  2:3804815/93‑1 (MQ=255)

                    ttAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGtttt                                               >  1:1717758/1‑93 (MQ=255)

                     tAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTg                                              <  1:604808/93‑1 (MQ=255)

                     tAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTg                                              <  1:7411959/93‑1 (MQ=255)

                     tAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTg                                              <  1:7116069/93‑1 (MQ=255)

                     tAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTg                                              >  2:722735/1‑93 (MQ=255)

                      aaTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTgg                                             <  2:3513400/93‑1 (MQ=255)

                         gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcgc                                          >  1:7706032/1‑93 (MQ=255)

                         gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcgc                                          >  2:5794939/1‑93 (MQ=255)

                         gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcgc                                          >  1:667596/1‑93 (MQ=255)

                         gCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGgcgc                                          >  1:629538/1‑93 (MQ=255)

                           aaGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCaa                                        >  2:4079687/1‑93 (MQ=255)

                            aGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                       >  1:2544043/1‑93 (MQ=255)

                            aGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                       >  2:3593030/1‑93 (MQ=255)

                            aGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAt                                       <  2:5257660/93‑1 (MQ=255)

                             ggAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATg                                      <  1:1527537/93‑1 (MQ=255)

                              gAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGc                                     <  2:90407/93‑1 (MQ=255)

                              gAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGc                                     >  2:7577950/1‑93 (MQ=255)

                                 tGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTgg                                  >  2:1114143/1‑93 (MQ=255)

                                   ccGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                <  1:2464587/93‑1 (MQ=255)

                                   ccGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                <  2:3302234/93‑1 (MQ=255)

                                   ccGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGc                                <  2:2261104/93‑1 (MQ=255)

                                    cGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCa                               <  2:1555664/93‑1 (MQ=255)

                                       tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            <  1:1015478/93‑1 (MQ=255)

                                       tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            <  2:7063514/93‑1 (MQ=255)

                                       tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            >  1:65776/1‑93 (MQ=255)

                                       tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            <  2:2201307/93‑1 (MQ=255)

                                       tGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCaaaa                            >  2:2484842/1‑93 (MQ=255)

                                        ggATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                           <  1:789465/93‑1 (MQ=255)

                                        ggATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAt                           <  2:4819100/93‑1 (MQ=255)

                                         gATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATg                          >  2:13946/1‑93 (MQ=255)

                                          aTAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGGTTTGGCGCAATGCTGGGCAAAATGc                         >  1:3845078/1‑93 (MQ=255)

                                           tAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCt                        <  2:7544593/93‑1 (MQ=255)

                                            aaaGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       <  1:199391/93‑1 (MQ=255)

                                            aaaGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       >  1:5082770/1‑93 (MQ=255)

                                            aaaGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTg                       <  1:6765874/93‑1 (MQ=255)

                                             aaGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTgg                      <  1:4371338/93‑1 (MQ=255)

                                              aGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGc                     >  1:2021083/1‑93 (MQ=255)

                                              aGTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGc                     <  2:602605/93‑1 (MQ=255)

                                               gTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    <  1:6201613/93‑1 (MQ=255)

                                               gTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    >  1:158124/1‑93 (MQ=255)

                                               gTTATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCa                    <  1:3193474/93‑1 (MQ=255)

                                                 tATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGa                  <  1:2060091/93‑1 (MQ=255)

                                                 tATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGa                  >  1:3348103/1‑93 (MQ=255)

                                                 tATTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGa                  >  2:4315813/1‑93 (MQ=255)

                                                  tttGGCTCCATCAAAGCGGGTGTCGGGG‑GGAAGCTCGGTAGCCTTGCACTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  2:1658131/92‑1 (MQ=255)

                                                  aTTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  2:7764035/93‑1 (MQ=255)

                                                  aTTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 <  1:6094523/93‑1 (MQ=255)

                                                  aTTGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAc                 >  1:4493761/1‑93 (MQ=255)

                                                   ttGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACt                <  1:5650092/93‑1 (MQ=255)

                                                   ttGGCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACt                <  1:3973111/93‑1 (MQ=255)

                                                      gCTCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCg             <  1:6394992/93‑1 (MQ=255)

                                                        tCCATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGt           <  2:5238612/93‑1 (MQ=255)

                                                         ccATCAAAGCTGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCCAAATGCTGGCAGACTGCGGTg          >  2:5592370/1‑93 (MQ=255)

                                                         ccATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTg          <  1:4387910/93‑1 (MQ=255)

                                                         ccATCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTg          >  2:505862/1‑93 (MQ=255)

                                                           aTCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgc        >  2:2810531/1‑93 (MQ=255)

                                                           aTCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgc        <  1:1806524/93‑1 (MQ=255)

                                                           aTCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgc        <  2:6488856/93‑1 (MQ=255)

                                                            tCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg       >  1:5371804/1‑93 (MQ=255)

                                                            tCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg       >  1:5581329/1‑93 (MQ=255)

                                                            tCAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcg       >  1:1190906/1‑93 (MQ=255)

                                                             cAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc      >  1:5682308/1‑93 (MQ=255)

                                                             cAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc      <  2:7813957/93‑1 (MQ=255)

                                                             cAAAGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGgcgc      <  1:2869666/93‑1 (MQ=255)

                                                              aaaGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGca     <  2:7360226/93‑1 (MQ=255)

                                                               aaGCCGGTGTCG‑GCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGcac    >  2:3991506/1‑93 (MQ=255)

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTC‑‑GC‑GGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAA  >  NC_000913/3544283‑3544437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGTATCGCCACCACGCTGA  >  NC_000913/3544283‑3544456

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCT                                                                                     >  SRR4302543.845854/1‑94 (MQ=60)

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCT                                                                                     <  SRR4302543.1967470/94‑1 (MQ=60)

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCT                                                                                     <  SRR4302543.4525132/94‑1 (MQ=60)

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCT                                                                                     <  SRR4302543.4525130/94‑1 (MQ=60)

CCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCT                                                                                     <  SRR4302543.3270057/94‑1 (MQ=60)

 CGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTT                                                                                    <  SRR4302543.2061278/94‑1 (MQ=60)

 CGTGGCGATTGCTGTTGGATTAATGCAAGGAATGCAGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTT                                                                                    <  SRR4302543.2722330/94‑1 (MQ=60)

   TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGC                                                                                  >  SRR4302543.6493392/1‑94 (MQ=60)

   TGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGC                                                                                  <  SRR4302543.3664104/94‑1 (MQ=60)

     GCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCC                                                                                <  SRR4302543.1274335/94‑1 (MQ=60)

     GCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCC                                                                                >  SRR4302543.197532/1‑94 (MQ=60)

     GCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCC                                                                                <  SRR4302543.3710899/94‑1 (MQ=60)

     GCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCC                                                                                >  SRR4302543.1564874/1‑94 (MQ=60)

      CGCTTGCTGTTGGATTAGTGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCT                                                                               <  SRR4302543.7105141/94‑1 (MQ=60)

      CGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCT                                                                               <  SRR4302543.6010557/94‑1 (MQ=60)

        CTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGA                                                                             >  SRR4302543.1829678/1‑94 (MQ=60)

        CTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGA                                                                             >  SRR4302543.7608063/1‑94 (MQ=60)

        CTTGCTGTTGGATT‑ATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                                            <  SRR4302543.4264469/94‑1 (MQ=60)

         TTGCTGTTGGATTAATGCAAGGAATGCGGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                                            <  SRR4302543.4915721/94‑1 (MQ=60)

         TTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                                            >  SRR4302543.1038268/1‑94 (MQ=60)

         TTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGAT                                                                            >  SRR4302543.1352954/1‑94 (MQ=60)

          TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGTTGTCGGCGGGACGCTTGGTTGCCTTGCCCTGATC                                                                           >  SRR4302543.5712783/1‑94 (MQ=60)

          TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                                           >  SRR4302543.3009195/1‑94 (MQ=60)

          TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                                           >  SRR4302543.7237984/1‑94 (MQ=60)

          TGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATC                                                                           <  SRR4302543.6583215/94‑1 (MQ=60)

           GCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCA                                                                          >  SRR4302543.3216462/1‑94 (MQ=60)

           GCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTG‑CCTGATCAT                                                                         <  SRR4302543.6398764/94‑1 (MQ=60)

            CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                                         <  SRR4302543.7392395/94‑1 (MQ=60)

            CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                                         >  SRR4302543.371143/1‑94 (MQ=60)

            CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                                         <  SRR4302543.3247646/94‑1 (MQ=60)

            CTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCAT                                                                         >  SRR4302543.3562487/1‑94 (MQ=60)

             TGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATG                                                                        >  SRR4302543.3711222/1‑94 (MQ=60)

             TGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATG                                                                        <  SRR4302543.1982671/94‑1 (MQ=60)

             TGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATG                                                                        >  SRR4302543.5612315/1‑94 (MQ=60)

              GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                                       >  SRR4302543.3151934/1‑94 (MQ=60)

              GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                                       <  SRR4302543.4293259/94‑1 (MQ=60)

              GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGG                                                                       >  SRR4302543.5668948/1‑94 (MQ=60)

              GTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAACCTTGCCCTGATCAgtg                                                                       >  SRR4302543.1728106/1‑91 (MQ=60)

               TTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGG                                                                      >  SRR4302543.336005/1‑94 (MQ=60)

               TTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGG                                                                      <  SRR4302543.5467738/94‑1 (MQ=60)

                TGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGT                                                                     <  SRR4302543.6996978/94‑1 (MQ=60)

                TGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGT                                                                     <  SRR4302543.667571/94‑1 (MQ=60)

                TGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGT                                                                     <  SRR4302543.41358/94‑1 (MQ=60)

                 GGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTT                                                                    >  SRR4302543.1154041/1‑94 (MQ=60)

                 GGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTT                                                                    >  SRR4302543.5475590/1‑94 (MQ=60)

                 GGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTT                                                                    >  SRR4302543.4681529/1‑94 (MQ=60)

                   ATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTT                                                                  >  SRR4302543.1733098/1‑94 (MQ=60)

                   ATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTT                                                                  <  SRR4302543.463191/94‑1 (MQ=60)

                    TTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTG                                                                 <  SRR4302543.1329980/94‑1 (MQ=60)

                    TTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTG                                                                 <  SRR4302543.3712432/94‑1 (MQ=60)

                    TTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTG                                                                 <  SRR4302543.6960651/94‑1 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                <  SRR4302543.610340/94‑1 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                <  SRR4302543.5376836/94‑1 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                >  SRR4302543.75598/1‑94 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                <  SRR4302543.4882973/94‑1 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                <  SRR4302543.7185196/94‑1 (MQ=60)

                     TAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGG                                                                <  SRR4302543.7483075/94‑1 (MQ=60)

                      AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGC                                                               <  SRR4302543.2528651/94‑1 (MQ=60)

                      AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGC                                                               <  SRR4302543.6343374/94‑1 (MQ=60)

                      AATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGCTGTGGC                                                               >  SRR4302543.6604625/1‑94 (MQ=60)

                       ATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGGG                                                              >  SRR4302543.4345692/1‑94 (MQ=60)

                        TGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGC                                                             >  SRR4302543.635294/1‑94 (MQ=60)

                        TGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGC                                                             >  SRR4302543.673741/1‑94 (MQ=60)

                        TGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGC                                                             >  SRR4302543.673740/1‑94 (MQ=60)

                        TGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGC                                                             >  SRR4302543.7778934/1‑94 (MQ=60)

                         GCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGACGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCA                                                            >  SRR4302543.5923956/1‑94 (MQ=60)

                           AAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAT                                                          >  SRR4302543.7609337/1‑94 (MQ=60)

                           AAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAAT                                                          >  SRR4302543.2567242/1‑94 (MQ=60)

                            AGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATG                                                         >  SRR4302543.1192817/1‑94 (MQ=60)

                             GGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGC                                                        <  SRR4302543.1541246/94‑1 (MQ=60)

                             GGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGC                                                        >  SRR4302543.6602568/1‑94 (MQ=60)

                             GGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGGAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGC                                                        >  SRR4302543.1878133/1‑94 (MQ=60)

                               GATGCCGCAGGATAAAGTTATTGGCTCCCTCAACGCCGGTGGCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTG                                                      <  SRR4302543.2038970/94‑1 (MQ=55)

                               AATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTG                                                      <  SRR4302543.3538304/94‑1 (MQ=60)

                                ATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGG                                                     >  SRR4302543.6379854/1‑94 (MQ=60)

                                 TGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGG                                                    <  SRR4302543.14669/94‑1 (MQ=60)

                                   CCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCA                                                  <  SRR4302543.2486821/94‑1 (MQ=60)

                                    CGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAA                                                 >  SRR4302543.5058738/1‑94 (MQ=60)

                                     GCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAA                                                >  SRR4302543.6228119/1‑94 (MQ=60)

                                      CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                                               >  SRR4302543.1549810/1‑94 (MQ=60)

                                      CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                                               >  SRR4302543.66358/1‑94 (MQ=60)

                                      CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                                               >  SRR4302543.6818902/1‑94 (MQ=60)

                                      CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                                               <  SRR4302543.1780921/94‑1 (MQ=60)

                                      CTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAA                                               >  SRR4302543.805720/1‑94 (MQ=60)

                                       TGTATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              <  SRR4302543.3124294/94‑1 (MQ=60)

                                       TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              <  SRR4302543.6111104/94‑1 (MQ=60)

                                       TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              <  SRR4302543.5621367/94‑1 (MQ=60)

                                       TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              >  SRR4302543.7122743/1‑94 (MQ=60)

                                       TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              <  SRR4302543.1024462/94‑1 (MQ=60)

                                       TGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAAT                                              <  SRR4302543.3809032/94‑1 (MQ=60)

                                        GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                                             <  SRR4302543.646987/94‑1 (MQ=60)

                                        GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                                             <  SRR4302543.1814653/94‑1 (MQ=60)

                                        GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                                             <  SRR4302543.796408/94‑1 (MQ=60)

                                        GGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATG                                             >  SRR4302543.2071247/1‑94 (MQ=60)

                                         GATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGC                                            <  SRR4302543.2035889/94‑1 (MQ=60)

                                         GATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGGTTTGGCGCAATGCTGGGCAAAATGC                                            >  SRR4302543.3879035/1‑94 (MQ=60)

                                          ATAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCT                                           >  SRR4302543.5693970/1‑94 (MQ=60)

                                           TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                                          <  SRR4302543.2347929/94‑1 (MQ=60)

                                           TAAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTG                                          >  SRR4302543.5128860/1‑94 (MQ=60)

                                            AAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGG                                         <  SRR4302543.201072/94‑1 (MQ=60)

                                            AAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGG                                         <  SRR4302543.6829770/94‑1 (MQ=60)

                                            AAAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGG                                         <  SRR4302543.4420494/94‑1 (MQ=60)

                                             AAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGC                                        >  SRR4302543.2039240/1‑94 (MQ=60)

                                             AAGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGC                                        <  SRR4302543.4410927/94‑1 (MQ=60)

                                              AGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCA                                       >  SRR4302543.7138735/1‑94 (MQ=60)

                                              AGTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCA                                       >  SRR4302543.159480/1‑94 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      <  SRR4302543.2537273/94‑1 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      <  SRR4302543.6260184/94‑1 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      <  SRR4302543.3222264/94‑1 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      <  SRR4302543.5722557/94‑1 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      >  SRR4302543.7507835/1‑94 (MQ=60)

                                               GTTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAG                                      >  SRR4302543.5392820/1‑94 (MQ=60)

                                                TTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGA                                     >  SRR4302543.5025165/1‑94 (MQ=60)

                                                TTATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGA                                     >  SRR4302543.3378247/1‑94 (MQ=60)

                                                 TATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTTCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAC                                    <  SRR4302543.671288/94‑1 (MQ=60)

                                                 TATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAC                                    >  SRR4302543.4534604/1‑94 (MQ=60)

                                                 TATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGAC                                    <  SRR4302543.2078518/94‑1 (MQ=60)

                                                 TATTGGCTCCATCAAAGCCGGGGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTTGCAGAC                                    >  SRR4302543.4534603/1‑94 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   >  SRR4302543.6183504/1‑94 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   <  SRR4302543.6152280/94‑1 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   <  SRR4302543.5615320/94‑1 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   <  SRR4302543.6152279/94‑1 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   >  SRR4302543.3327100/1‑94 (MQ=60)

                                                  ATTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACT                                   <  SRR4302543.317892/94‑1 (MQ=60)

                                                   TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                                  <  SRR4302543.4008330/94‑1 (MQ=60)

                                                   TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                                  <  SRR4302543.4593006/94‑1 (MQ=60)

                                                   TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                                  <  SRR4302543.5701600/94‑1 (MQ=60)

                                                   TTGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTG                                  <  SRR4302543.3030615/94‑1 (MQ=60)

                                                    TGGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGC                                 <  SRR4302543.164056/94‑1 (MQ=60)

                                                     GGCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCG                                <  SRR4302543.2938154/94‑1 (MQ=60)

                                                      GCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGG                               <  SRR4302543.6455191/94‑1 (MQ=60)

                                                      GCTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGG                               <  SRR4302543.4519565/94‑1 (MQ=60)

                                                       CTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGT                              >  SRR4302543.2967150/1‑94 (MQ=60)

                                                       CTCCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGT                              >  SRR4302543.1426583/1‑94 (MQ=60)

                                                         CCATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGG                            <  SRR4302543.4427693/94‑1 (MQ=60)

                                                          CATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGC                           >  SRR4302543.7736674/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.6269702/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          <  SRR4302543.1822692/94‑1 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.477884/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.5632141/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.5420447/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.1201646/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.1158465/1‑94 (MQ=60)

                                                           ATCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCG                          >  SRR4302543.4496391/1‑94 (MQ=60)

                                                            TCAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGC                         >  SRR4302543.5734173/1‑94 (MQ=60)

                                                             CAAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCA                        <  SRR4302543.2895804/94‑1 (MQ=60)

                                                              AAAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCAC                       >  SRR4302543.7827575/1‑94 (MQ=60)

                                                               AAGCCGGTGTCGGCGGGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACA                      >  SRR4302543.2758997/1‑94 (MQ=60)

                                                                              GGACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGTATCGCCACCAC       >  SRR4302543.1670500/1‑94 (MQ=60)

                                                                               GACGCTCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGTATCGCCACCACG      <  SRR4302543.2770288/94‑1 (MQ=60)

                                                                                  C‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGTATCGCCACCACGCTGA  <  SRR4302543.2380486/94‑1 (MQ=60)

TCGTGGCGCTTGCTGTTGGATTAATGCAAGGAATGCCGCTGGATAAAGTTATTGGCTCCATCAAAGCCGGTGTCG‑‑CGGACG‑TCGGTAGCCTTGCCCTGATCATGGGTTTTGGCGCAATGCTGGGCAAAATGCTGGCAGACTGCGGTGGCGCACAACGTATCGCCACCACGCTGA  >  NC_000913/3544283‑3544456

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`