Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,717 +C coding (86/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,7171.C100.0% 993.3 / NA 319T29R (ACG→AGG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (145/174);  total (145/174)

Only 100 of 358 total aligned reads displayed.

TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACG‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT  >  NC_000913/4001625‑4001803
                                                                                             |                                                                                      
  cTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACgct                                                                                       <  1:1019880/93‑3 (MQ=255)
  cTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACgct                                                                                       <  2:4574289/93‑3 (MQ=255)
   tcatcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACgctg                                                                                      >  1:2337846/1‑90 (MQ=255)
      tcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgcg                                                                                   >  1:449898/1‑93 (MQ=255)
      tcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgcg                                                                                   >  1:1530112/1‑93 (MQ=255)
      tcaGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGgcg                                                                                   >  1:2928623/1‑93 (MQ=255)
       caGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAATTAATCAACTTGTAGTACGCTGgcgc                                                                                  >  2:4974041/1‑93 (MQ=255)
        aGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCt                                                                                 <  2:5620820/93‑1 (MQ=255)
         gCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCta                                                                                <  1:2735975/93‑1 (MQ=255)
         gCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCta                                                                                <  2:7566549/93‑1 (MQ=255)
         gCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCta                                                                                <  1:5601178/93‑1 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCtata                                                                              <  1:1242471/93‑1 (MQ=255)
           accaccATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCtata                                                                              <  1:6883393/93‑1 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCGCGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAc                                                                             <  2:3106471/93‑1 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGGGCTATAc                                                                             >  2:6709757/1‑93 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAc                                                                             >  2:7811738/1‑93 (MQ=255)
            ccaccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAc                                                                             <  1:5938816/93‑1 (MQ=255)
             caccaTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATAcc                                                                            <  1:5546778/93‑1 (MQ=255)
                 aTAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTTAAGTACGCTGGCGCTATACCCCaa                                                                        >  1:5002972/1‑93 (MQ=255)
                  tAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGCCGTAGTAAATAAACTTTAAGTAAGCTGGCGCTATACCCCaaa                                                                       >  1:1755246/1‑93 (MQ=255)
                  tAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaa                                                                       >  2:1919281/1‑93 (MQ=255)
                  tAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGCAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaa                                                                       >  2:4813049/1‑93 (MQ=255)
                    aaGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaata                                                                     >  2:5084193/1‑93 (MQ=255)
                     aGAAAAACGACCAGAACACGCGATGCCGCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataa                                                                    <  1:2507138/93‑1 (MQ=255)
                      gAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaa                                                                   >  2:2469053/1‑93 (MQ=255)
                        aaaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaaa                                                                 >  2:2559283/1‑92 (MQ=255)
                         aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaata                                                                <  1:6095738/93‑1 (MQ=255)
                         aaaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCaaataaaata                                                                <  1:2575969/93‑1 (MQ=255)
                          aaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAaataaaataa                                                               <  2:6426281/93‑1 (MQ=255)
                          aaCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAaataaaataa                                                               <  2:4061496/93‑1 (MQ=255)
                           aCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAg                                                              <  2:7924726/93‑1 (MQ=255)
                           aCGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAg                                                              >  1:2028617/1‑93 (MQ=255)
                            cGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGc                                                             <  2:2690381/93‑1 (MQ=255)
                             gACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAACg                                                            >  1:6728611/1‑93 (MQ=255)
                              atcAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCgg                                                           <  2:6342437/91‑1 (MQ=255)
                              aCCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCgg                                                           <  2:2847443/93‑1 (MQ=255)
                              aCCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAAGCTGGCGCTATACCCCAAATAAAATAAGcag                                                           >  1:3436621/1‑91 (MQ=255)
                               ccAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAATCAACTTGGAGGACGCTGGCGCTATACCCCAAATAAAATAAACGGc                                                          >  2:4447889/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGcca                                                        >  1:5223653/1‑91 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                        >  1:3002676/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                        >  2:3244969/1‑93 (MQ=255)
                                 aGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCaa                                                        >  1:3473366/1‑93 (MQ=255)
                                  gATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGGACGCTGGGGCTATACCCCAAATAAAATAAGCGGGAag                                                       >  1:1971481/1‑93 (MQ=255)
                                  gATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAATCAACTTGAAGTAAGCTGGAGCTATACCCCAAATAAAATAAGCGGCAag                                                       >  1:3647049/1‑93 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      <  2:6045005/93‑1 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      <  2:3606634/93‑1 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      <  1:4854740/93‑1 (MQ=255)
                                   aTCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAaga                                                      >  1:6243416/1‑93 (MQ=255)
                                    tCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag                                                     <  2:7409147/93‑1 (MQ=255)
                                    tCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAagag                                                     >  2:7657490/1‑93 (MQ=255)
                                        gcgATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAg                                                 <  1:6307092/93‑1 (MQ=255)
                                           aTGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTaa                                              >  1:6341825/1‑93 (MQ=255)
                                            tGCGTCAGGATTTGATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAt                                             >  1:7158855/1‑93 (MQ=255)
                                            tGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGGACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAt                                             >  2:617396/1‑93 (MQ=255)
                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAATTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  1:7849262/93‑1 (MQ=255)
                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  1:5692905/93‑1 (MQ=255)
                                             gCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  2:1212317/93‑1 (MQ=255)
                                             gCGGCAGAATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATa                                            <  1:7651348/93‑1 (MQ=255)
                                              cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATCCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc                                           <  1:1310575/93‑1 (MQ=255)
                                              cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc                                           <  2:7263641/93‑1 (MQ=255)
                                              cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc                                           <  1:4058565/93‑1 (MQ=255)
                                              cGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAc                                           <  1:2181835/93‑1 (MQ=255)
                                               gTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACg                                          <  1:5290982/93‑1 (MQ=255)
                                                tCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCCAATAAAATAAGCGGCAAGAGCGAGTAATACGc                                         >  2:4730920/1‑93 (MQ=255)
                                                  aGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGccc                                       <  1:4657604/93‑1 (MQ=255)
                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCCAATAAAATAAGCGGCAAGGGCGAGTAATACGCCCt                                      >  2:1725179/1‑93 (MQ=255)
                                                   ggATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCt                                      >  1:3204460/1‑93 (MQ=255)
                                                       ttCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcg                                  <  2:3401883/93‑1 (MQ=255)
                                                       ttCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcg                                  <  2:3801904/93‑1 (MQ=255)
                                                         cATCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCcgcg                                <  2:2102724/93‑1 (MQ=255)
                                                          aTCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt                               <  2:2960775/93‑1 (MQ=255)
                                                          aTCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt                               <  2:6936807/93‑1 (MQ=255)
                                                          aTCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgt                               >  2:5306508/1‑93 (MQ=255)
                                                           tCGGCGTGTACGTAGTAAATCAACGTGAAGTACGCTGGCGCTATACCCCAAAAAAAATAAGCGGCAAGAGCGAGTAATACGTCCTGCCGCgtt                              <  2:3995965/93‑1 (MQ=255)
                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                              <  2:3721587/93‑1 (MQ=255)
                                                           tCGGCGGGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtt                              >  1:899991/1‑93 (MQ=255)
                                                            cggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt                             <  1:2454679/93‑1 (MQ=255)
                                                            cggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgttt                             <  2:6789853/93‑1 (MQ=255)
                                                             ggcggGCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCgtttg                            >  1:3763655/1‑93 (MQ=255)
                                                                 ggCACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGtttt                        <  1:3871462/93‑1 (MQ=255)
                                                                   cACGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGc                      <  2:2363513/93‑1 (MQ=255)
                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  2:1568756/1‑93 (MQ=255)
                                                                    aCGTAGTAAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGca                     >  2:5759112/1‑93 (MQ=255)
                                                                      gtagtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatc                   >  1:4183147/1‑93 (MQ=255)
                                                                       tagtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcc                  >  2:6549716/1‑93 (MQ=255)
                                                                        agtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatcca                 >  1:4912678/1‑93 (MQ=255)
                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGcatccat                >  1:7495436/1‑93 (MQ=255)
                                                                         gtaAATCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGGAATACGCCCTGCCGCGTGTGTGGTGcaaccac                >  1:7002612/1‑92 (MQ=255)
                                                                           aaaTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCg              >  1:1203325/1‑93 (MQ=255)
                                                                            aaTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCgg             >  1:7632789/1‑93 (MQ=255)
                                                                            aaTCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCgg             <  1:6498090/93‑1 (MQ=255)
                                                                              tCAACTTGAAGTACGCTGGCGCTATACCCCAAATAAAAAAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGCTTGTTTTGCATCCATCGGGa           >  2:5434346/1‑93 (MQ=255)
                                                                                aaCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATTAGCGGCAAGAGCGAGGAAAACGCCCCGCTGCGTTTGTTTTGCAGCCTTCGGGTAt         >  2:7041654/1‑93 (MQ=255)
                                                                                aaCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAt         <  1:1643251/93‑1 (MQ=255)
                                                                                 aCTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATa        >  1:7078743/1‑93 (MQ=255)
                                                                                  cTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAc       >  2:3470725/1‑93 (MQ=255)
                                                                                  cTTGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAc       <  1:1369330/93‑1 (MQ=255)
                                                                                   ttGAAGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACt      >  1:3286567/1‑93 (MQ=255)
                                                                                       aGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAtt  >  1:774283/1‑93 (MQ=255)
                                                                                       aGTACGCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCAtt  >  1:414597/1‑93 (MQ=255)
                                                                                             |                                                                                      
TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTACG‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT  >  NC_000913/4001625‑4001803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 211 total aligned reads displayed.
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  NC_000913/4001624‑4001810
                                                                                              |                                                                                              
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G                                                                                                <  SRR4302543.3123102/94‑1 (MQ=60)
 TGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAATAC‑A‑T                                                                                              >  SRR4302543.2944277/1‑94 (MQ=60)
  GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gct                                                                                              <  SRR4302543.7715725/94‑3 (MQ=60)
  GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gct                                                                                              <  SRR4302543.4787104/94‑3 (MQ=60)
  GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gct                                                                                              <  SRR4302543.814486/94‑3 (MQ=60)
  GCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gct                                                                                              <  SRR4302543.3488979/94‑3 (MQ=60)
   CTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gctg                                                                                             >  SRR4302543.2359059/1‑91 (MQ=60)
   CTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑Gctg                                                                                             <  SRR4302543.1028903/94‑4 (MQ=60)
    TCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGACGTAGTAAATCAACTTGAAGTAC‑GCTGG                                                                                            >  SRR4302543.1708718/1‑94 (MQ=60)
    TCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGG                                                                                            <  SRR4302543.5299433/94‑1 (MQ=60)
    TCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGG                                                                                            <  SRR4302543.4556651/94‑1 (MQ=60)
     CATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGCCGTAGTAAATCAACTTGAAGTAC‑Gctggg                                                                                           >  SRR4302543.3204077/1‑89 (MQ=60)
     CATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGC                                                                                           <  SRR4302543.4028748/94‑1 (MQ=60)
     CATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGC                                                                                           <  SRR4302543.6349379/94‑1 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          >  SRR4302543.2955227/1‑94 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          <  SRR4302543.33021/94‑1 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          >  SRR4302543.454101/1‑94 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          <  SRR4302543.7274922/94‑1 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          >  SRR4302543.6000705/1‑94 (MQ=60)
      ATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCG                                                                                          >  SRR4302543.1543831/1‑94 (MQ=60)
        CAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCT                                                                                        <  SRR4302543.6317037/94‑1 (MQ=60)
        CAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCT                                                                                        <  SRR4302543.3901739/94‑1 (MQ=60)
         AGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTA                                                                                       <  SRR4302543.679971/94‑1 (MQ=60)
          GCACCACGATAAAGAAAAACGACCAGATCACGCTATGCGTCATGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      <  SRR4302543.2273066/94‑1 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      <  SRR4302543.5652212/94‑1 (MQ=60)
          GCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTAT                                                                                      <  SRR4302543.2027786/94‑1 (MQ=60)
           CACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATA                                                                                     <  SRR4302543.6731333/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302543.6948151/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302543.1253633/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302543.7535675/94‑1 (MQ=60)
            ACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAC                                                                                    <  SRR4302543.7388609/94‑1 (MQ=60)
             CCCCCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   <  SRR4302543.2649219/94‑1 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   <  SRR4302543.2435631/94‑1 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACC                                                                                   <  SRR4302543.5993152/94‑1 (MQ=60)
             CCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTAA‑GCTGGCGCTATATC                                                                                   >  SRR4302543.2221475/1‑94 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGGGCTATACCC                                                                                  >  SRR4302543.2741942/1‑94 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCC                                                                                  <  SRR4302543.5597216/94‑1 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCC                                                                                  >  SRR4302543.6393212/1‑94 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATAACC                                                                                  >  SRR4302543.3334036/1‑94 (MQ=60)
              CACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCAGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCC                                                                                  >  SRR4302543.6393213/1‑94 (MQ=60)
                CCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCA                                                                                <  SRR4302543.5214920/94‑1 (MQ=60)
                 CATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTTAAGTAC‑GCTGGCGCTATACCCCAA                                                                               >  SRR4302543.5048509/1‑94 (MQ=60)
                  ATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGGCCGTAGTAAATAAACTTTAAGTAA‑GCTGGCGCTATACCCCAAA                                                                              >  SRR4302543.1770924/1‑94 (MQ=60)
                  ATAAAGAAAAACGACCAGAACACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGGAAATCAACATGAAGCACAC‑TCGCGCTATACCCCAAA                                                                              >  SRR4302543.4273822/1‑94 (MQ=60)
                   TAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAAT                                                                             <  SRR4302543.4097483/94‑1 (MQ=60)
                      AGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAA                                                                          <  SRR4302543.2529903/94‑1 (MQ=60)
                      AGAAAAACGACCAGAACACGCGATGCCGCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAA                                                                          <  SRR4302543.2529904/94‑1 (MQ=60)
                         AAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATA                                                                       <  SRR4302543.4930697/94‑1 (MQ=60)
                          AAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTTAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAA                                                                      >  SRR4302543.496340/1‑94 (MQ=60)
                          AAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAA                                                                      <  SRR4302543.2599446/94‑1 (MQ=60)
                          AAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAA                                                                      <  SRR4302543.3495168/94‑1 (MQ=60)
                          AAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAA                                                                      <  SRR4302543.6153502/94‑1 (MQ=60)
                           AACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAG                                                                     >  SRR4302543.2046851/1‑94 (MQ=60)
                           AACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAG                                                                     <  SRR4302543.3009521/94‑1 (MQ=60)
                            ACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGC                                                                    >  SRR4302543.1325807/1‑94 (MQ=60)
                            ACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGC                                                                    <  SRR4302543.5368104/94‑1 (MQ=60)
                            ACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGC                                                                    <  SRR4302543.4956029/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCG                                                                   <  SRR4302543.2064925/94‑1 (MQ=60)
                             CGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAACG                                                                   >  SRR4302543.6792177/1‑94 (MQ=60)
                              GACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGG                                                                  <  SRR4302543.3970938/94‑1 (MQ=60)
                              GACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGG                                                                  >  SRR4302543.2864891/1‑94 (MQ=60)
                              GACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAA‑GCTGGCGCTATACCCCAAATAAAATAAGCAG                                                                  >  SRR4302543.3467379/1‑94 (MQ=60)
                               ACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAA‑GCTGGCGCTATACCCCAAATAAAATAAGCGGC                                                                 >  SRR4302543.2338414/1‑94 (MQ=60)
                                CCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCCAATTGAAGTAC‑GCTTGCGCTATACCCCCAATAAAATAAACGGCA                                                                >  SRR4302543.765066/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCCAATAAAATAAGCGGCAA                                                               >  SRR4302543.4114648/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCCA                                                               >  SRR4302543.5270686/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302543.3029891/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302543.3504479/1‑94 (MQ=60)
                                 CAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAA                                                               >  SRR4302543.874658/1‑94 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              >  SRR4302543.3679113/1‑94 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAG                                                              >  SRR4302543.1990437/1‑94 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGGAC‑GCTGGGGCTATACCCCAAATAAAATAAGCGGGAAG                                                              >  SRR4302543.1989149/1‑94 (MQ=60)
                                  AGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGGAAATCAACTTGAAGTAA‑GCTGGAGCTATACCCCAAATAAAATAAGCGGCAAG                                                              >  SRR4302543.3679112/1‑94 (MQ=60)
                                   GATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGA                                                             >  SRR4302543.6302314/1‑94 (MQ=60)
                                   GATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGA                                                             >  SRR4302543.7908114/1‑94 (MQ=60)
                                   GATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAAA                                                             >  SRR4302543.5783974/1‑94 (MQ=60)
                                    ATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAG                                                            <  SRR4302543.4899012/94‑1 (MQ=60)
                                     TCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGC                                                           <  SRR4302543.7156283/94‑1 (MQ=60)
                                     TCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGC                                                           <  SRR4302543.4538632/94‑1 (MQ=60)
                                     TCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGC                                                           <  SRR4302543.1210900/94‑1 (MQ=60)
                                      CACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCG                                                          <  SRR4302543.6433924/94‑1 (MQ=60)
                                      CACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCG                                                          <  SRR4302543.1725113/94‑1 (MQ=60)
                                      CACGCGATGCGTCAGGATTTCATCGGCGGGCACGGAGTAAATCAACTTGAAGTAC‑GCTGGAGCTATACCCCCAATAAAATAAGGCGCAAGAGCG                                                          >  SRR4302543.7021585/1‑94 (MQ=60)
                                       ACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGA                                                         >  SRR4302543.551459/1‑94 (MQ=60)
                                        CGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAG                                                        >  SRR4302543.688452/1‑94 (MQ=60)
                                        CGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAG                                                        >  SRR4302543.372028/1‑94 (MQ=60)
                                        CGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAG                                                        <  SRR4302543.7023877/94‑1 (MQ=60)
                                         GCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGT                                                       <  SRR4302543.7236516/94‑1 (MQ=60)
                                         GCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGT                                                       <  SRR4302543.6366415/94‑1 (MQ=60)
                                          CGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTA                                                      <  SRR4302543.5564009/94‑1 (MQ=60)
                                          CGATGCGTCAGGATTTCATCGGCGGGCACGGAGGAAATCAACTTGAAGGAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTA                                                      >  SRR4302543.5333090/1‑94 (MQ=60)
                                           GATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAA                                                     >  SRR4302543.4009556/1‑94 (MQ=60)
                                           GATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAA                                                     >  SRR4302543.6401457/1‑94 (MQ=60)
                                            ATGCGTCAGGATTTGATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAT                                                    >  SRR4302543.7228420/1‑94 (MQ=60)
                                            ATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAAA                                                    >  SRR4302543.4300657/1‑94 (MQ=60)
                                             AGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATA                                                   <  SRR4302543.6611077/94‑1 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAATTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302543.7923232/94‑1 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302543.7723897/94‑1 (MQ=60)
                                              GCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302543.5744851/94‑1 (MQ=60)
                                              GCGGCAGAATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATAC                                                  <  SRR4302543.7723898/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATCCCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 <  SRR4302543.1322223/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 <  SRR4302543.4094903/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 <  SRR4302543.2201394/94‑1 (MQ=60)
                                               CGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACG                                                 >  SRR4302543.5820969/1‑94 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGC                                                <  SRR4302543.5338479/94‑1 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGC                                                >  SRR4302543.5602423/1‑94 (MQ=60)
                                                GTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGC                                                >  SRR4302543.3618552/1‑94 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               <  SRR4302543.498126/94‑1 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               <  SRR4302543.3441244/94‑1 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               >  SRR4302543.4220101/1‑94 (MQ=60)
                                                 TCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACACCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCC                                               >  SRR4302543.7136401/1‑94 (MQ=60)
                                                  CAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCC                                              >  SRR4302543.7026062/1‑94 (MQ=60)
                                                  CAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCC                                              <  SRR4302543.248368/94‑1 (MQ=60)
                                                  CAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCC                                              <  SRR4302543.248369/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302543.586765/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302543.759087/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302543.4700023/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             >  SRR4302543.2562801/1‑94 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302543.3039271/94‑1 (MQ=60)
                                                   AGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             >  SRR4302543.3233367/1‑94 (MQ=60)
                                                   AGGATGTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCT                                             <  SRR4302543.1647582/94‑1 (MQ=60)
                                                    GGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTG                                            >  SRR4302543.4717556/1‑94 (MQ=60)
                                                    GGATTTCATCGGCGGGCACGAAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACACCAAATACAATAAGCGGCAAGAACGAGGAAAACGCCCTG                                            >  SRR4302543.4901311/1‑94 (MQ=60)
                                                     GATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGC                                           >  SRR4302543.2943570/1‑94 (MQ=60)
                                                      ATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCC                                          <  SRR4302543.2016862/94‑1 (MQ=60)
                                                      ATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCC                                          >  SRR4302543.1219086/1‑94 (MQ=60)
                                                      ATGTCATCGGCGGTCACGTAGTAAATCACCTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCC                                          <  SRR4302543.7192004/94‑1 (MQ=60)
                                                       TTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCG                                         <  SRR4302543.3600604/94‑1 (MQ=60)
                                                           ATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTT                                     >  SRR4302543.907936/1‑94 (MQ=60)
                                                             CGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTG                                   >  SRR4302543.5619320/1‑94 (MQ=60)
                                                             CGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTG                                   >  SRR4302543.3796782/1‑94 (MQ=60)
                                                             CGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTG                                   <  SRR4302543.2476821/94‑1 (MQ=60)
                                                             CGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTG                                   >  SRR4302543.1699859/1‑94 (MQ=60)
                                                                CGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTT                                <  SRR4302543.4617511/94‑1 (MQ=60)
                                                                CGGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCAGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGCTT                                >  SRR4302543.662972/1‑94 (MQ=60)
                                                                 GGGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTT                               <  SRR4302543.6260823/94‑1 (MQ=60)
                                                                  GGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTG                              <  SRR4302543.7877008/94‑1 (MQ=60)
                                                                  GGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTG                              <  SRR4302543.3478160/94‑1 (MQ=60)
                                                                  GGCACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTG                              <  SRR4302543.5696353/94‑1 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCA                            >  SRR4302543.1217456/1‑94 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCA                            >  SRR4302543.1865369/1‑94 (MQ=60)
                                                                    CACGTAGTAAATCAACTTGAAGGAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCA                            >  SRR4302543.1404297/1‑94 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          >  SRR4302543.4221054/1‑94 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          >  SRR4302543.890889/1‑94 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          >  SRR4302543.5727298/1‑94 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          <  SRR4302543.3274314/94‑1 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          >  SRR4302543.2585057/1‑94 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          <  SRR4302543.1287835/94‑1 (MQ=60)
                                                                      CGTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATC                          >  SRR4302543.4221055/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302543.4106733/1‑94 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         <  SRR4302543.2471867/94‑1 (MQ=60)
                                                                       GTAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCC                         >  SRR4302543.1562031/1‑94 (MQ=60)
                                                                        TAGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCA                        >  SRR4302543.4957450/1‑94 (MQ=60)
                                                                         AGTAAATCACCTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       <  SRR4302543.1215561/94‑1 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       >  SRR4302543.4442734/1‑94 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       >  SRR4302543.5048299/1‑94 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       >  SRR4302543.7616819/1‑94 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       <  SRR4302543.777205/94‑1 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCAT                       <  SRR4302543.5715595/94‑1 (MQ=60)
                                                                         AGTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGGAATACGCCCTGCCGCGTgtgtggtgcaaccac                       >  SRR4302543.7069061/1‑79 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      >  SRR4302543.6376923/1‑94 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      <  SRR4302543.3815466/94‑1 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      >  SRR4302543.25964/1‑94 (MQ=60)
                                                                          GTAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATC                      <  SRR4302543.3119580/94‑1 (MQ=60)
                                                                           TAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCG                     >  SRR4302543.1214161/1‑94 (MQ=60)
                                                                           TAAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCG                     <  SRR4302543.1503762/94‑1 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGG                    >  SRR4302543.7705211/1‑94 (MQ=60)
                                                                            AAATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGG                    >  SRR4302543.2993047/1‑94 (MQ=60)
                                                                             AATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGG                   <  SRR4302543.6559304/94‑1 (MQ=60)
                                                                             AATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGG                   <  SRR4302543.7763433/94‑1 (MQ=60)
                                                                              ATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGA                  <  SRR4302543.2934744/94‑1 (MQ=60)
                                                                              ATCAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGA                  >  SRR4302543.1299780/1‑94 (MQ=60)
                                                                                CAACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAAT                <  SRR4302543.3255784/94‑1 (MQ=60)
                                                                                 AAGTTGAAGTAC‑GCTGGGGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATCCGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               <  SRR4302543.1355143/94‑1 (MQ=60)
                                                                                 AACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATCCGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               <  SRR4302543.1355145/94‑1 (MQ=60)
                                                                                 AACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               >  SRR4302543.3679424/1‑94 (MQ=60)
                                                                                 AACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               <  SRR4302543.1657920/94‑1 (MQ=60)
                                                                                 AACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATA               >  SRR4302543.7147486/1‑94 (MQ=60)
                                                                                  ACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAC              <  SRR4302543.3079673/94‑1 (MQ=60)
                                                                                  ACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAC              <  SRR4302543.6035550/94‑1 (MQ=60)
                                                                                  ACTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATAC              <  SRR4302543.5130294/94‑1 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             >  SRR4302543.3316229/1‑94 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             <  SRR4302543.1381620/94‑1 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             >  SRR4302543.1894438/1‑94 (MQ=60)
                                                                                   CTTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACT             <  SRR4302543.628087/94‑1 (MQ=60)
                                                                                    TTGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTC            <  SRR4302543.7144845/94‑1 (MQ=60)
                                                                                     TGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCA           >  SRR4302543.2093142/1‑94 (MQ=60)
                                                                                     TGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCA           >  SRR4302543.6503989/1‑94 (MQ=60)
                                                                                     TGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCA           >  SRR4302543.5161924/1‑94 (MQ=60)
                                                                                     TGAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCA           <  SRR4302543.1205822/94‑1 (MQ=60)
                                                                                      GAAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCTGCTAGAGTTAGTAATACGCCTTTCCGCGTCTGTTTTGCTTCCATCGTGTATACTCAT          >  SRR4302543.7094107/1‑94 (MQ=26)
                                                                                       AAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT         >  SRR4302543.781083/1‑94 (MQ=60)
                                                                                       AAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT         >  SRR4302543.781085/1‑94 (MQ=60)
                                                                                       AAGTAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATT         >  SRR4302543.418470/1‑94 (MQ=60)
                                                                                          TAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT      <  SRR4302543.7275337/94‑1 (MQ=60)
                                                                                          TAC‑GCTGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTT      <  SRR4302543.3420958/94‑1 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  SRR4302543.1469696/1‑94 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  SRR4302543.2031048/1‑94 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  <  SRR4302543.3131645/94‑1 (MQ=60)
                                                                                              C‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCACTCGGGAATACTCATTTTTAATT  <  SRR4302543.1426080/94‑1 (MQ=60)
                                                                                              |                                                                                              
ATGCTCATCAGCACCACCATAAAGAAAAACGACCAGATCACGCGATGCGTCAGGATTTCATCGGCGGGCACGTAGTAAATCAACTTGAAGTAC‑G‑TGGCGCTATACCCCAAATAAAATAAGCGGCAAGAGCGAGTAATACGCCCTGCCGCGTTTGTTTTGCATCCATCGGGAATACTCATTTTTAATT  >  NC_000913/4001624‑4001810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑