Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1696 279.3 15874187 97.8% 15524954 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT  >  NC_000913/4474756‑4474914
                                                                                             |                                                                             
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGTATAAAATAATGTGATGCCGGGATGGTTT                                                                               <  SRR4302543.3494715/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                               >  SRR4302543.6438477/1‑94 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                               <  SRR4302543.5970900/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                               >  SRR4302543.1084614/1‑94 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                               <  SRR4302543.420088/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT                                                                               >  SRR4302543.223419/1‑94 (MQ=60)
 AATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑G                                                                      >  SRR4302543.5310966/1‑94 (MQ=60)
 AATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑G                                                                      >  SRR4302543.3915383/1‑94 (MQ=60)
 AATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑G                                                                      >  SRR4302543.3601646/1‑94 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgt                                                                             <  SRR4302543.1153789/94‑3 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgt                                                                             >  SRR4302543.4825107/1‑92 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgt                                                                             >  SRR4302543.4532634/1‑92 (MQ=60)
  ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGAGGAAGAATAGAAATATCACTGCATAAAATAATATGATGCCGGGATGGTTTgt                                                                             >  SRR4302543.3965771/1‑92 (MQ=60)
   TCCACCGGAAAATTTACGTATAGCAATAGACAACTTTGGGTGGAAGAATAGACCAATCACTGCATAAAATAATTTGATGCCGGGATGGTTTtgt                                                                            >  SRR4302543.1756319/1‑91 (MQ=60)
   TCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgta                                                                            <  SRR4302543.5358676/94‑4 (MQ=60)
   TCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgta                                                                            >  SRR4302543.7928653/1‑91 (MQ=60)
    CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat                                                                           >  SRR4302543.4729328/1‑90 (MQ=60)
    CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat                                                                           >  SRR4302543.3137342/1‑90 (MQ=60)
    CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat                                                                           >  SRR4302543.5874121/1‑90 (MQ=60)
     CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt                                                                          >  SRR4302543.2055445/1‑89 (MQ=60)
      ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtattt                                                                         >  SRR4302543.3202775/1‑88 (MQ=60)
      ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtattt                                                                         >  SRR4302543.2533920/1‑88 (MQ=60)
      ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtattt                                                                         >  SRR4302543.1322241/1‑88 (MQ=60)
       CCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttc                                                                        >  SRR4302543.6728661/1‑87 (MQ=60)
        CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc                                                                       <  SRR4302543.7012046/94‑9 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc                                                                      <  SRR4302543.1786396/94‑10 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc                                                                      <  SRR4302543.4240270/94‑10 (MQ=60)
         GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc                                                                      <  SRR4302543.4240269/94‑10 (MQ=60)
          GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg                                                                     <  SRR4302543.7558936/94‑11 (MQ=60)
          GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg                                                                     <  SRR4302543.4938877/94‑11 (MQ=60)
            AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                   <  SRR4302543.1899703/94‑13 (MQ=60)
              ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat                                                                 >  SRR4302543.2035104/1‑80 (MQ=60)
              ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat                                                                 >  SRR4302543.1768231/1‑80 (MQ=60)
              ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat                                                                 >  SRR4302543.2753946/1‑80 (MQ=60)
              ATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat                                                                 <  SRR4302543.7389258/94‑15 (MQ=60)
               TTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatc                                                                <  SRR4302543.7254668/94‑16 (MQ=60)
                TTACGTATAGCAATAGAACACTTTGGGTGGAAGAATCGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatct                                                               >  SRR4302543.3481424/1‑78 (MQ=60)
                TTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatct                                                               <  SRR4302543.5039974/94‑17 (MQ=60)
                 TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt                                                              >  SRR4302543.341493/1‑77 (MQ=60)
                 TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt                                                              >  SRR4302543.3555747/1‑77 (MQ=60)
                  ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt                                                             >  SRR4302543.2131007/1‑76 (MQ=60)
                   CGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta                                                            >  SRR4302543.3920743/1‑75 (MQ=60)
                    GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat                                                           >  SRR4302543.6603503/1‑74 (MQ=60)
                     TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata                                                          >  SRR4302543.5505019/1‑73 (MQ=60)
                     TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata                                                          <  SRR4302543.2140877/94‑22 (MQ=60)
                      ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag                                                         >  SRR4302543.3358971/1‑72 (MQ=60)
                      ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag                                                         >  SRR4302543.2175020/1‑72 (MQ=60)
                      ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag                                                         <  SRR4302543.7867824/94‑23 (MQ=60)
                        AGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg                                                       >  SRR4302543.3992408/1‑70 (MQ=60)
                         GCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga                                                      <  SRR4302543.4309166/94‑26 (MQ=60)
                          CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat                                                     >  SRR4302543.1477961/1‑68 (MQ=60)
                           AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata                                                    >  SRR4302543.5520121/1‑67 (MQ=60)
                           AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata                                                    <  SRR4302543.3217181/94‑28 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   >  SRR4302543.6926858/1‑66 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   >  SRR4302543.2008629/1‑66 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   <  SRR4302543.6794404/94‑29 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   <  SRR4302543.6786815/94‑29 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   <  SRR4302543.6794403/94‑29 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   <  SRR4302543.2768843/94‑29 (MQ=60)
                            ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag                                                   >  SRR4302543.3200809/1‑66 (MQ=60)
                                 ACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt                                              >  SRR4302543.202835/1‑61 (MQ=60)
                                   ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat                                            >  SRR4302543.2063856/1‑59 (MQ=60)
                                   ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat                                            >  SRR4302543.2774740/1‑59 (MQ=60)
                                    CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt                                           <  SRR4302543.616968/94‑37 (MQ=60)
                                    CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt                                           >  SRR4302543.2455599/1‑58 (MQ=60)
                                    CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt                                           <  SRR4302543.4904211/94‑37 (MQ=60)
                                     TTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt                                          <  SRR4302543.6982499/94‑38 (MQ=60)
                                      TTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta                                         >  SRR4302543.6238981/1‑56 (MQ=60)
                                      TTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta                                         <  SRR4302543.7705257/94‑39 (MQ=60)
                                        GGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact                                       <  SRR4302543.3790875/94‑41 (MQ=60)
                                        GGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact                                       >  SRR4302543.7926611/1‑54 (MQ=60)
                                         GGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg                                      <  SRR4302543.1619253/94‑42 (MQ=60)
                                             GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtg                                  >  SRR4302543.70115/1‑49 (MQ=60)
                                              AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgt                                 <  SRR4302543.6939042/94‑47 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc                                <  SRR4302543.2703628/94‑48 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc                                >  SRR4302543.6474369/1‑47 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc                                >  SRR4302543.4540640/1‑47 (MQ=60)
                                               AGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtc                                >  SRR4302543.861240/1‑47 (MQ=60)
                                                GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg                               <  SRR4302543.2946255/94‑49 (MQ=60)
                                                GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg                               <  SRR4302543.6085615/94‑49 (MQ=60)
                                                GAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcg                               >  SRR4302543.5674466/1‑46 (MQ=60)
                                                  ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcg                             >  SRR4302543.3270920/1‑44 (MQ=60)
                                                  ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcg                             <  SRR4302543.4625194/94‑51 (MQ=60)
                                                     GACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACC                         <  SRR4302543.3118758/94‑1 (MQ=21)
                                                     GACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACC                         <  SRR4302543.851944/94‑1 (MQ=21)
                                                      ACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgacaa                         >  SRR4302543.6438029/1‑40 (MQ=60)
                                                        CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC                      >  SRR4302543.3266033/1‑94 (MQ=16)
                                                        CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC                      <  SRR4302543.2757877/94‑1 (MQ=16)
                                                        CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC                      >  SRR4302543.1426244/1‑94 (MQ=16)
                                                        CTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATC                      >  SRR4302543.7776263/1‑94 (MQ=16)
                                                              CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT                >  SRR4302543.7979933/1‑94 (MQ=16)
                                                              CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT                >  SRR4302543.4569656/1‑94 (MQ=16)
                                                              CTGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT                >  SRR4302543.3645443/1‑94 (MQ=16)
                                                               TGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTT               <  SRR4302543.4890165/94‑1 (MQ=18)
                                                               TGCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTT               >  SRR4302543.3541283/1‑94 (MQ=18)
                                                                GCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT              >  SRR4302543.6958130/1‑94 (MQ=19)
                                                                GCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT              <  SRR4302543.5431335/94‑1 (MQ=19)
                                                                GCATAAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTT              >  SRR4302543.4443342/1‑94 (MQ=19)
                                                                  ataAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGA            >  SRR4302543.972912/4‑94 (MQ=23)
                                                                   taAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT           >  SRR4302543.861384/3‑94 (MQ=25)
                                                                   taAAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGAT           <  SRR4302543.4620595/92‑1 (MQ=25)
                                                                   A‑AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATA          >  SRR4302543.1439426/1‑94 (MQ=26)
                                                                   A‑AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATA          >  SRR4302543.602067/1‑94 (MQ=26)
                                                                     AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG         <  SRR4302543.7533058/94‑1 (MQ=28)
                                                                     AAATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAG         >  SRR4302543.7877603/1‑94 (MQ=28)
                                                                      AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT        >  SRR4302543.608000/1‑94 (MQ=28)
                                                                      AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT        >  SRR4302543.4774461/1‑94 (MQ=28)
                                                                      AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT        >  SRR4302543.3001623/1‑94 (MQ=28)
                                                                      AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGT        <  SRR4302543.2810209/94‑1 (MQ=28)
                                                                       ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA       >  SRR4302543.5813870/1‑94 (MQ=28)
                                                                       ATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTA       <  SRR4302543.5723611/94‑1 (MQ=28)
                                                                        TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT      >  SRR4302543.942892/1‑94 (MQ=28)
                                                                        TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT      <  SRR4302543.4865326/94‑1 (MQ=28)
                                                                        TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT      <  SRR4302543.4859727/94‑1 (MQ=28)
                                                                        TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTAT      <  SRR4302543.2744330/94‑1 (MQ=28)
                                                                        TAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGAACATCACCGCTTTGATAGTAT      >  SRR4302543.5144332/1‑94 (MQ=19)
                                                                         AATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATG     >  SRR4302543.1448068/1‑94 (MQ=30)
                                                                         AATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATG     <  SRR4302543.7581247/94‑1 (MQ=30)
                                                                          ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC    >  SRR4302543.3265521/1‑94 (MQ=32)
                                                                          ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC    <  SRR4302543.6102712/94‑1 (MQ=32)
                                                                          ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC    >  SRR4302543.5815238/1‑94 (MQ=32)
                                                                          ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC    <  SRR4302543.6102713/94‑1 (MQ=32)
                                                                          ATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGC    >  SRR4302543.7213912/1‑94 (MQ=32)
                                                                           TGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCA   <  SRR4302543.2822586/94‑1 (MQ=34)
                                                                           TGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCA   >  SRR4302543.5460354/1‑94 (MQ=34)
                                                                            GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT  >  SRR4302543.2551165/1‑94 (MQ=36)
                                                                            GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT  <  SRR4302543.1837440/94‑1 (MQ=36)
                                                                            GTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCTTTGATAGTATGCAT  <  SRR4302543.5592648/94‑1 (MQ=36)
                                                                                             |                                                                             
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCAT  >  NC_000913/4474756‑4474914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑