Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
70,940 |
A→G |
Y185C (TAC→TGC) |
araC → |
transcriptional regulator for ara operon |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 70,940 | 0 | A | G | 100.0%
| 655.1
/ NA
| 202 | Y185C (TAC→TGC) | araC | transcriptional regulator for ara operon |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (101/101); total (101/101) |
Only 100 of 206 total aligned reads displayed.
TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT > NC_000913/70850‑71029
|
tGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCa > 1:1417072/1‑93 (MQ=255)
tGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCa < 2:3339031/93‑1 (MQ=255)
tGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCa > 2:3717/1‑93 (MQ=255)
gCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCAt < 2:1896432/93‑1 (MQ=255)
cTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATc < 2:350722/93‑1 (MQ=255)
ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCa > 1:1265107/1‑93 (MQ=255)
ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCa < 1:906450/93‑1 (MQ=255)
ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCa > 1:3725026/1‑93 (MQ=255)
tGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAg < 1:3581440/93‑1 (MQ=255)
gAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGTATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGc < 1:3813788/93‑1 (MQ=255)
gAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGc < 2:3043902/93‑1 (MQ=255)
gCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGa > 1:2886160/1‑93 (MQ=255)
cAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGAt > 2:4065486/1‑93 (MQ=255)
acttGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATc > 2:3732397/3‑93 (MQ=255)
aaTTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATc > 2:3307974/1‑93 (MQ=255)
aTTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCa < 1:4310110/93‑1 (MQ=255)
aTTGTTACGGCGGCGCATGTAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCa < 2:2952297/93‑1 (MQ=255)
ttGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAc < 1:1885220/93‑1 (MQ=255)
tGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAcc < 2:4290360/93‑1 (MQ=255)
gTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCt > 1:1913095/1‑93 (MQ=255)
ttACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTg < 1:2198822/93‑1 (MQ=255)
ttACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTg < 1:586156/93‑1 (MQ=255)
tACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTgg < 1:408779/93‑1 (MQ=255)
cTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTggga > 1:4017573/1‑91 (MQ=255)
cTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCa > 1:122075/1‑93 (MQ=255)
ggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGCTGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACa > 2:1056488/1‑93 (MQ=255)
ggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACa < 1:4178442/93‑1 (MQ=255)
ggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACa < 1:2324047/93‑1 (MQ=255)
ggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACa < 1:2190447/93‑1 (MQ=255)
gcgcATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAg > 2:55471/1‑93 (MQ=255)
cgcATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGc < 1:4674896/93‑1 (MQ=255)
cgcATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGc < 1:4366057/93‑1 (MQ=255)
cgcATGGAAGCGATTAACGAGCCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGc < 2:1796831/93‑1 (MQ=255)
gcATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCa < 1:4055061/93‑1 (MQ=255)
aTGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAt < 1:3240206/93‑1 (MQ=255)
tGGAAGCGCTTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAtt > 2:4583096/1‑93 (MQ=255)
tGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAACTGGCAGACAGCAAtt > 1:4451545/1‑93 (MQ=255)
ggAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAttt < 2:3682705/93‑1 (MQ=255)
ggAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAttt > 2:3195458/1‑93 (MQ=255)
gAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAtttt > 1:2079224/1‑93 (MQ=255)
aGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGa < 2:3388404/93‑1 (MQ=255)
gCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGat < 1:3902958/93‑1 (MQ=255)
gCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGat > 1:159751/1‑93 (MQ=255)
gCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGat < 2:2589894/93‑1 (MQ=255)
cGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGata < 2:3937517/93‑1 (MQ=255)
gATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGatat > 2:1620675/1‑93 (MQ=255)
aTTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGGCAGCAATTTTGATATc < 2:2086712/93‑1 (MQ=255)
aTTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATc > 1:784811/1‑93 (MQ=255)
ttAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCg > 2:739281/1‑93 (MQ=255)
gAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGc > 2:1181950/1‑93 (MQ=255)
aGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCg > 2:2706067/1‑93 (MQ=255)
aGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCg < 2:888956/93‑1 (MQ=255)
gTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGt > 1:2764486/1‑93 (MQ=255)
gTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTATCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGt < 1:2154746/93‑1 (MQ=255)
cTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGca < 1:4002174/93‑1 (MQ=255)
tccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcac > 1:170434/1‑93 (MQ=255)
tccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcac > 2:2462140/1‑93 (MQ=255)
ccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcaca < 2:1259250/93‑1 (MQ=255)
catccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAg > 1:75408/1‑93 (MQ=255)
atccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGc > 1:3865048/1‑93 (MQ=255)
tccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCa > 1:73514/1‑93 (MQ=255)
caCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATg < 1:1068577/93‑1 (MQ=255)
caCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATg > 1:2984245/1‑93 (MQ=255)
caCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATg > 1:3053164/1‑93 (MQ=255)
aCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGt < 1:2786871/93‑1 (MQ=255)
ccGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGtt < 2:4394279/93‑1 (MQ=255)
ccGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGtt < 1:2558367/93‑1 (MQ=255)
gATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTg < 2:3645548/93‑1 (MQ=255)
aTGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGc > 1:2953810/1‑93 (MQ=255)
tGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCt < 1:1755394/93‑1 (MQ=255)
tGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCt < 1:82711/93‑1 (MQ=255)
ggATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCtt < 1:3649603/93‑1 (MQ=255)
gATAATCGGTTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTg < 1:2925363/93‑1 (MQ=255)
gATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTg > 2:2178746/1‑93 (MQ=255)
gATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTg > 1:2362920/1‑93 (MQ=255)
tAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTc < 2:2558953/93‑1 (MQ=255)
tAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTc > 2:3674168/1‑93 (MQ=255)
aaTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCg < 2:224708/93‑1 (MQ=255)
aaTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCg > 1:1833939/1‑93 (MQ=255)
aaTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCg > 1:26061/1‑93 (MQ=255)
aTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGc > 1:3093748/1‑93 (MQ=255)
tCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGcc < 1:3752957/93‑1 (MQ=255)
gggTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGt < 2:1376396/93‑1 (MQ=255)
ggTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTc < 1:622696/93‑1 (MQ=255)
tACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTcgc < 1:1581872/93‑1 (MQ=255)
cgcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGt < 1:344640/93‑1 (MQ=255)
cgcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGt < 1:4645046/93‑1 (MQ=255)
gcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTc > 2:1761623/1‑93 (MQ=255)
cgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCt > 1:4590865/1‑93 (MQ=255)
gAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTg > 2:4331292/1‑93 (MQ=255)
aGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGt > 1:316347/1‑93 (MQ=255)
ggCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATAGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTc > 2:24362/1‑93 (MQ=255)
cTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcac > 1:2700572/1‑93 (MQ=255)
cTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcac > 2:2803658/1‑93 (MQ=255)
ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGAGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca > 1:3766897/1‑93 (MQ=255)
tGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACAt < 1:2493521/93‑1 (MQ=255)
ttCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATc < 2:2343724/92‑1 (MQ=255)
gTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCCCACCGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATc < 2:3608312/93‑1 (MQ=255)
cAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCtt < 2:4167707/93‑1 (MQ=255)
cAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCtt < 1:3481688/93‑1 (MQ=255)
|
TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT > NC_000913/70850‑71029
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCCG > NC_000913/70847‑71033
|
ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTG < SRR4302535.1331851/94‑1 (MQ=60)
ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTG > SRR4302535.3044597/1‑94 (MQ=60)
ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTG < SRR4302535.3408783/94‑1 (MQ=60)
CTTCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCA > SRR4302535.4571518/1‑94 (MQ=60)
CTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCA < SRR4302535.2282095/94‑1 (MQ=60)
CTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCA > SRR4302535.1427189/1‑94 (MQ=60)
CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA < SRR4302535.63559/94‑1 (MQ=60)
CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA > SRR4302535.1274155/1‑94 (MQ=60)
CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA < SRR4302535.3817762/94‑1 (MQ=60)
CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA > SRR4302535.540294/1‑94 (MQ=60)
CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA > SRR4302535.3750833/1‑94 (MQ=60)
TTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAG < SRR4302535.912883/94‑1 (MQ=60)
TGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGC < SRR4302535.3606281/94‑1 (MQ=60)
GAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGTATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCG < SRR4302535.3840104/94‑1 (MQ=60)
GAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCG > SRR4302535.2207049/1‑94 (MQ=60)
AGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGA > SRR4302535.3558478/1‑94 (MQ=60)
AGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGA > SRR4302535.2906579/1‑94 (MQ=60)
CAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATA > SRR4302535.2041718/1‑94 (MQ=60)
AATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCA < SRR4302535.3767267/94‑1 (MQ=60)
ATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAC < SRR4302535.3052810/94‑1 (MQ=60)
ATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAC < SRR4302535.4339594/94‑1 (MQ=60)
TTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACC < SRR4302535.1898804/94‑1 (MQ=60)
TGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCT > SRR4302535.1926880/1‑94 (MQ=60)
GTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTG < SRR4302535.272774/94‑1 (MQ=60)
TTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGG > SRR4302535.4090316/1‑94 (MQ=60)
TTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGG < SRR4302535.590264/94‑1 (MQ=60)
TTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGG < SRR4302535.2214488/94‑1 (MQ=60)
TACTGCGGCGCATGGAAGCGCTTAACGAGTCGCTCCATCAACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGC > SRR4302535.1843010/1‑94 (MQ=60)
TACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGC < SRR4302535.411647/94‑1 (MQ=60)
ACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGGA > SRR4302535.4045055/1‑94 (MQ=60)
ACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCA > SRR4302535.122930/1‑94 (MQ=60)
CTGCGGCGCAGGGAAGAGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAG < SRR4302535.2827598/94‑1 (MQ=60)
TGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGA < SRR4302535.4011319/94‑1 (MQ=60)
CGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACA > SRR4302535.1344631/1‑94 (MQ=60)
GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG < SRR4302535.2340677/94‑1 (MQ=60)
GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG < SRR4302535.4207044/94‑1 (MQ=60)
GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG < SRR4302535.3201566/94‑1 (MQ=60)
GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG > SRR4302535.3471682/1‑94 (MQ=60)
GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG < SRR4302535.2206039/94‑1 (MQ=60)
CGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCA < SRR4302535.4706456/94‑1 (MQ=60)
CGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCA < SRR4302535.4395930/94‑1 (MQ=60)
GCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAA < SRR4302535.4082825/94‑1 (MQ=60)
CATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAT > SRR4302535.1449962/1‑94 (MQ=60)
ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT < SRR4302535.2253951/94‑1 (MQ=60)
ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT < SRR4302535.3262705/94‑1 (MQ=60)
ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT > SRR4302535.1599834/1‑94 (MQ=60)
ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAACTGGCAGACAGCAATT > SRR4302535.4482074/1‑94 (MQ=60)
TGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTT < SRR4302535.189497/94‑1 (MQ=60)
GGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTT > SRR4302535.2094202/1‑94 (MQ=60)
GGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTT < SRR4302535.1701440/94‑1 (MQ=60)
AAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGA > SRR4302535.2987013/1‑94 (MQ=60)
AAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGA < SRR4302535.3461604/94‑1 (MQ=60)
AGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGAT > SRR4302535.160871/1‑94 (MQ=60)
AGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGAT > SRR4302535.3892251/1‑94 (MQ=60)
GCGATTAACGAGTCGCTCGATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA < SRR4302535.2395873/94‑1 (MQ=60)
GCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA < SRR4302535.3929695/94‑1 (MQ=60)
ACGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA < SRR4302535.4033773/94‑1 (MQ=60)
GATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGGAGACAGCAATTTTGATATC > SRR4302535.3085610/1‑94 (MQ=60)
GATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATC < SRR4302535.3783664/94‑1 (MQ=60)
GATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATC > SRR4302535.790317/1‑94 (MQ=60)
ACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAG < SRR4302535.1759161/94‑1 (MQ=60)
GAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCG < SRR4302535.773391/94‑1 (MQ=60)
AGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGT > SRR4302535.3627707/1‑94 (MQ=60)
AGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGT > SRR4302535.2350659/1‑94 (MQ=60)
AGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGT > SRR4302535.2784178/1‑94 (MQ=60)
GTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTC < SRR4302535.296367/94‑1 (MQ=60)
GTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTATCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTC < SRR4302535.2170230/94‑1 (MQ=60)
CGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGC > SRR4302535.4140965/1‑94 (MQ=60)
CGCTCCATCCACCGATGGATAATCGGGGACGCGAGGCTCGTCAGTGCATCAGCGATCACCTGGCAGCCAGCAATTTTGATATCGCCAGCGTCGC > SRR4302535.2385928/1‑94 (MQ=60)
GCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCA > SRR4302535.1912966/1‑94 (MQ=60)
GCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCA > SRR4302535.877419/1‑94 (MQ=60)
CTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCAC < SRR4302535.4029552/94‑1 (MQ=60)
CTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCAC > SRR4302535.171614/1‑94 (MQ=60)
CCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAG > SRR4302535.4341741/1‑94 (MQ=60)
CCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAG > SRR4302535.463574/1‑94 (MQ=60)
CCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAG > SRR4302535.75959/1‑94 (MQ=60)
CCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAG < SRR4302535.809615/94‑1 (MQ=60)
CATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGC > SRR4302535.2798616/1‑94 (MQ=60)
CATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGC > SRR4302535.3891632/1‑94 (MQ=60)
ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA > SRR4302535.74046/1‑94 (MQ=60)
TCCACCGATGGATAATCGGGTGCGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCAT < SRR4302535.3148491/94‑1 (MQ=60)
TCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCAT < SRR4302535.4052640/94‑1 (MQ=60)
CCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATG > SRR4302535.3074544/1‑94 (MQ=60)
CCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATG > SRR4302535.3005178/1‑94 (MQ=60)
CACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGT < SRR4302535.1076174/94‑1 (MQ=60)
ACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTT < SRR4302535.2806701/94‑1 (MQ=60)
CCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTT < SRR4302535.2576783/94‑1 (MQ=60)
CGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTG > SRR4302535.2203999/1‑94 (MQ=60)
GATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGC > SRR4302535.1183265/1‑94 (MQ=60)
GATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGC > SRR4302535.2974559/1‑94 (MQ=60)
ATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGTCAGCGTCGCACAGCATGGTTGCT > SRR4302535.4285442/1‑94 (MQ=60)
TGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTT < SRR4302535.1768079/94‑1 (MQ=60)
TGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTT > SRR4302535.3636161/1‑94 (MQ=60)
TGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTT < SRR4302535.83296/94‑1 (MQ=60)
GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG < SRR4302535.3674873/94‑1 (MQ=60)
GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG > SRR4302535.2379891/1‑94 (MQ=60)
GATAATCGGTTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGT < SRR4302535.2945986/94‑1 (MQ=60)
TAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCG > SRR4302535.1847172/1‑94 (MQ=60)
TAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCG > SRR4302535.26264/1‑94 (MQ=60)
AATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGC > SRR4302535.3115293/1‑94 (MQ=60)
TCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCACTTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCG < SRR4302535.2531941/94‑1 (MQ=60)
TCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCG < SRR4302535.3778928/94‑1 (MQ=60)
GGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTC < SRR4302535.748997/94‑1 (MQ=60)
GGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTC > SRR4302535.1233769/1‑94 (MQ=60)
GGGTACGCGAGGCTTGTCAGTGCATCAGCCATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTC < SRR4302535.1346334/94‑1 (MQ=60)
GGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCG < SRR4302535.627022/94‑1 (MQ=60)
TACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCG < SRR4302535.1593291/94‑1 (MQ=60)
CGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTC < SRR4302535.4676525/94‑1 (MQ=60)
CGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTC < SRR4302535.347017/94‑1 (MQ=60)
GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT > SRR4302535.4622114/1‑94 (MQ=60)
GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT < SRR4302535.4690010/94‑1 (MQ=60)
CGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTG > SRR4302535.615490/1‑94 (MQ=60)
GAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGT > SRR4302535.318545/1‑94 (MQ=60)
AGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCCCAGACTGTTTGCTTGTCGCCGCGGCGCCTGTC > SRR4302535.3887588/1‑94 (MQ=60)
AGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTC > SRR4302535.2650156/1‑94 (MQ=60)
GCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCAC > SRR4302535.2719868/1‑94 (MQ=60)
CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA > SRR4302535.4622851/1‑94 (MQ=60)
CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA > SRR4302535.3696418/1‑94 (MQ=60)
CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGAGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA > SRR4302535.3792909/1‑94 (MQ=60)
TTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACAT < SRR4302535.442814/94‑1 (MQ=60)
TGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATC < SRR4302535.2511516/94‑1 (MQ=60)
GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT > SRR4302535.2612215/1‑94 (MQ=60)
GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT > SRR4302535.2909791/1‑94 (MQ=60)
CAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT < SRR4302535.3505870/94‑1 (MQ=60)
AGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTT < SRR4302535.2113827/94‑1 (MQ=60)
GCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCCG < SRR4302535.734103/94‑1 (MQ=60)
|
ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCCG > NC_000913/70847‑71033
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
