Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	70,940	A→G	Y185C (TAC→TGC)	araC →	transcriptional regulator for ara operon

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	70,940	0	A	G	99.7%	971.9 / NA	303	Y185C (TAC→TGC)	araC	transcriptional regulator for ara operon
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (148/154); minor base T (0/1); total (148/155)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 307 total aligned reads displayed.

TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT  >  NC_000913/70850‑71029

tGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCa                                                                                         >  2:6078435/1‑93 (MQ=255)

tGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCa                                                                                         >  2:5236781/1‑93 (MQ=255)

  cTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATc                                                                                       <  1:6159043/93‑1 (MQ=255)

   ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCa                                                                                      <  2:4854974/93‑1 (MQ=255)

   ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCa                                                                                      <  2:3808291/93‑1 (MQ=255)

   ttGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGGGCATCa                                                                                      >  1:3753410/1‑93 (MQ=255)

    tGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAg                                                                                     >  2:6084727/1‑93 (MQ=255)

     gAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGc                                                                                    <  1:4997242/93‑1 (MQ=255)

      aGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCg                                                                                   >  2:6824143/1‑93 (MQ=255)

       gCAATTGCTACTGCGGCGCATGGAAGCGATTAACGAGTCGCACCATCCACCCATGGATAATCGCGTACGCGAGGCTTGTCAGTGCATCAGCGa                                                                                  <  2:5458500/93‑1 (MQ=255)

        cAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGAt                                                                                 <  2:3519399/93‑1 (MQ=255)

         aaTTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATc                                                                                <  2:2076924/93‑1 (MQ=255)

           ttGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGTCTTGTCAGTGCATCAGCGATCAc                                                                              >  2:4282787/1‑93 (MQ=255)

           ttGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAc                                                                              <  1:4420771/93‑1 (MQ=255)

            tGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAcc                                                                             <  2:7691171/93‑1 (MQ=255)

              ttACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTg                                                                           <  2:6663135/93‑1 (MQ=255)

               tACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTgg                                                                          <  1:3647448/93‑1 (MQ=255)

                 cTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCa                                                                        <  1:5556544/93‑1 (MQ=255)

                  tGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCaa                                                                       >  1:2715495/1‑92 (MQ=255)

                   gcggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGa                                                                      <  1:2548091/93‑1 (MQ=255)

                   gcggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGa                                                                      <  1:2286612/93‑1 (MQ=255)

                    cggcgCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATAGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGAc                                                                     <  2:2257198/93‑1 (MQ=255)

                     ggcgCAGGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACa                                                                    <  1:5074/93‑1 (MQ=255)

                      gcgcATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAg                                                                   <  1:5196600/93‑1 (MQ=255)

                         cATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCaa                                                                >  2:5500515/1‑93 (MQ=255)

                         cATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCaa                                                                >  1:4280261/1‑93 (MQ=255)

                           tGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAtt                                                              <  2:4409974/93‑1 (MQ=255)

                           tGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAtt                                                              >  1:2103885/1‑93 (MQ=255)

                            ggAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAttt                                                             <  2:279683/93‑1 (MQ=255)

                            ggAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAttt                                                             >  1:5151579/1‑93 (MQ=255)

                             gAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAtttt                                                            >  2:1874573/1‑93 (MQ=255)

                               aGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGa                                                          <  2:1516560/93‑1 (MQ=255)

                               aGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGa                                                          >  2:1920395/1‑93 (MQ=255)

                                gCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACCGCAATTTTGat                                                         >  1:7581020/1‑93 (MQ=255)

                                 cGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGata                                                        <  2:406020/93‑1 (MQ=255)

                                  gATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGatat                                                       >  1:1474411/1‑93 (MQ=255)

                                   aTTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCATCTGGCAGACAGCAATTTTGATATc                                                      >  1:6532095/1‑93 (MQ=255)

                                   aTTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATc                                                      <  1:2402435/93‑1 (MQ=255)

                                    ttAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCg                                                     >  1:4678856/1‑93 (MQ=255)

                                      aaCGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGcc                                                   <  1:6776804/93‑1 (MQ=255)

                                      aaCGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGcc                                                   >  1:4191282/1‑93 (MQ=255)

                                        cGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAg                                                 <  1:7872003/93‑1 (MQ=255)

                                        cGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAg                                                 <  2:1482433/93‑1 (MQ=255)

                                        cGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAg                                                 <  2:5158539/93‑1 (MQ=255)

                                          aGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCg                                               >  2:1758562/1‑93 (MQ=255)

                                              gCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGc                                           <  2:7366675/93‑1 (MQ=255)

                                              gCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGc                                           <  2:5563628/93‑1 (MQ=255)

                                              gCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGc                                           >  2:4826135/1‑93 (MQ=255)

                                              gCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGc                                           >  1:1113692/1‑93 (MQ=255)

                                                tccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcac                                         >  1:5293947/1‑93 (MQ=255)

                                                tccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcac                                         >  2:3782912/1‑93 (MQ=255)

                                                cccatccgCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcac                                         >  2:4797946/2‑93 (MQ=255)

                                                 ccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcaca                                        <  2:1985845/93‑1 (MQ=255)

                                                 ccatccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGcaca                                        >  2:7168315/1‑93 (MQ=255)

                                                   atccaCCGATGGATAATCGGGTACGCGAGGCTTGTCGGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGc                                      >  1:4546093/1‑93 (MQ=255)

                                                   atccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGc                                      <  1:6718167/93‑1 (MQ=255)

                                                    tccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCa                                     >  1:6850143/1‑93 (MQ=255)

                                                    tccaCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCa                                     >  1:6412701/1‑93 (MQ=255)

                                                      caCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATg                                   >  2:3140742/1‑93 (MQ=255)

                                                      caCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACACCATg                                   >  1:6046573/1‑93 (MQ=255)

                                                       aCCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGt                                  >  1:1010022/1‑93 (MQ=255)

                                                        ccGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGtt                                 <  1:3551161/93‑1 (MQ=255)

                                                          gATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCCGCGTCGCACAGCATGTTTg                               >  2:4111915/1‑93 (MQ=255)

                                                           aTGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGc                              <  1:1800752/93‑1 (MQ=255)

                                                           aTGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGc                              >  1:5803348/1‑93 (MQ=255)

                                                           aTGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGc                              >  2:7828507/1‑93 (MQ=255)

                                                            tGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCt                             <  2:2940608/93‑1 (MQ=255)

                                                             ggATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCtt                            >  1:7304048/1‑93 (MQ=255)

                                                             ggATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCtt                            <  1:5906604/93‑1 (MQ=255)

                                                              gATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTg                           <  1:1662866/93‑1 (MQ=255)

                                                              gATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTg                           <  1:1368426/93‑1 (MQ=255)

                                                                tAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTc                         <  1:263543/93‑1 (MQ=255)

                                                                tAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTc                         >  2:5936913/1‑93 (MQ=255)

                                                                 aaTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCg                        >  2:1283125/1‑93 (MQ=255)

                                                                  aTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGc                       <  2:7869935/93‑1 (MQ=255)

                                                                  aTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGc                       >  2:822634/1‑93 (MQ=255)

                                                                  aTCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGc                       <  1:324614/93‑1 (MQ=255)

                                                                    cGGGTACGCGAGGCTTGTCAGTGCATCAGCAATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCg                     <  1:4109672/93‑1 (MQ=255)

                                                                        tACGCGAGGCTTGTCAGTGCATCAGCGATCCCCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTcgc                 >  2:5284547/1‑93 (MQ=255)

                                                                         aCGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCTGCGTCGCACAGCATGTTTGCTTGTCGCCGTcgcg                >  1:4836282/1‑93 (MQ=255)

                                                                         aCGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTcgcg                >  1:3919014/1‑93 (MQ=255)

                                                                          cgcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGt               >  1:1187321/1‑93 (MQ=255)

                                                                          cgcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGt               >  2:1001222/1‑93 (MQ=255)

                                                                           gcgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTc              <  1:2938945/93‑1 (MQ=255)

                                                                            cgAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCt             <  1:339637/93‑1 (MQ=255)

                                                                             gAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTg            >  2:4196974/1‑93 (MQ=255)

                                                                             gAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTg            <  1:2600922/93‑1 (MQ=255)

                                                                                gCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTca         >  2:3253525/1‑93 (MQ=255)

                                                                                 cTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcac        >  2:5808162/1‑93 (MQ=255)

                                                                                 cTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcac        >  2:241801/1‑93 (MQ=255)

                                                                                  ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca       <  2:6381946/93‑1 (MQ=255)

                                                                                  ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca       <  1:3696645/93‑1 (MQ=255)

                                                                                  ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca       >  2:4989452/1‑93 (MQ=255)

                                                                                  ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca       >  1:2163457/1‑93 (MQ=255)

                                                                                  ttGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTcaca       >  2:4631081/1‑93 (MQ=255)

                                                                                   tGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACAt      <  2:5357812/93‑1 (MQ=255)

                                                                                    gTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATc     <  1:7785163/93‑1 (MQ=255)

                                                                                    gTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATc     >  1:4000232/1‑93 (MQ=255)

                                                                                    gTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATc     <  2:1631365/93‑1 (MQ=255)

                                                                                       aGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCttt  <  2:5977912/93‑1 (MQ=255)

TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT  >  NC_000913/70850‑71029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCC  >  NC_000913/70847‑71032

ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTG                                                                                              >  SRR4302543.1004545/1‑94 (MQ=60)

ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTG                                                                                              <  SRR4302543.4150766/94‑1 (MQ=60)

 TCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGC                                                                                             >  SRR4302543.2003828/1‑94 (MQ=60)

 TCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGC                                                                                             >  SRR4302543.4083114/1‑94 (MQ=60)

  CTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCA                                                                                            >  SRR4302543.4938923/1‑94 (MQ=60)

  CTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCA                                                                                            <  SRR4302543.3315917/94‑1 (MQ=60)

   TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGGTATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCAT                                                                                           <  SRR4302543.5189839/94‑1 (MQ=60)

   TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCAT                                                                                           <  SRR4302543.5189840/94‑1 (MQ=60)

   TGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCAT                                                                                           <  SRR4302543.2628704/94‑1 (MQ=60)

    GCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATC                                                                                          <  SRR4302543.1643158/94‑1 (MQ=60)

     CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCA                                                                                         <  SRR4302543.6217338/94‑1 (MQ=60)

     CTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGGGCATCA                                                                                         >  SRR4302543.3786435/1‑94 (MQ=60)

      TTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAG                                                                                        >  SRR4302543.2140950/1‑94 (MQ=60)

      TTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAG                                                                                        <  SRR4302543.7919354/94‑1 (MQ=60)

       TGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGC                                                                                       >  SRR4302543.3560737/1‑94 (MQ=60)

        GAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCG                                                                                      <  SRR4302543.5042726/94‑1 (MQ=60)

           CAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATC                                                                                   <  SRR4302543.4113200/94‑1 (MQ=60)

           CAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATC                                                                                   <  SRR4302543.4245757/94‑1 (MQ=60)

           CAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATC                                                                                   <  SRR4302543.3714671/94‑1 (MQ=60)

            AATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCC                                                                                  >  SRR4302543.1111881/1‑94 (MQ=60)

            AATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCA                                                                                  >  SRR4302543.6585276/1‑94 (MQ=60)

            AATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCA                                                                                  >  SRR4302543.3660228/1‑94 (MQ=60)

            AATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCA                                                                                  <  SRR4302543.5286428/94‑1 (MQ=60)

             ATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAC                                                                                 >  SRR4302543.3989334/1‑94 (MQ=60)

             ATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCAC                                                                                 <  SRR4302543.2459400/94‑1 (MQ=60)

              TTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACC                                                                                >  SRR4302543.4242523/1‑94 (MQ=60)

              TTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACC                                                                                <  SRR4302543.4460838/94‑1 (MQ=60)

              TTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACC                                                                                >  SRR4302543.690756/1‑94 (MQ=60)

              TTGTTACTGCGGCGCAGGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACC                                                                                <  SRR4302543.3401912/94‑1 (MQ=60)

                GTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTG                                                                              <  SRR4302543.2294585/94‑1 (MQ=60)

                 TTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGG                                                                             <  SRR4302543.5231964/94‑1 (MQ=60)

                  TACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGC                                                                            >  SRR4302543.3736962/1‑94 (MQ=60)

                  TACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGC                                                                            >  SRR4302543.4594841/1‑94 (MQ=60)

                  TACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGC                                                                            <  SRR4302543.3679513/94‑1 (MQ=60)

                   ACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCA                                                                           >  SRR4302543.259953/1‑94 (MQ=60)

                    CTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAG                                                                          <  SRR4302543.5607082/94‑1 (MQ=60)

                    CTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAA                                                                          >  SRR4302543.2740171/1‑94 (MQ=60)

                      GCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGAC                                                                        <  SRR4302543.2571346/94‑1 (MQ=60)

                      GCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGAC                                                                        <  SRR4302543.2307492/94‑1 (MQ=60)

                       CGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACA                                                                       <  SRR4302543.4114010/94‑1 (MQ=60)

                       CGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACA                                                                       >  SRR4302543.6782464/1‑94 (MQ=60)

                       CGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACA                                                                       <  SRR4302543.1122676/94‑1 (MQ=60)

                       CGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACA                                                                       >  SRR4302543.6048323/1‑94 (MQ=60)

                        GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG                                                                      <  SRR4302543.7605432/94‑1 (MQ=60)

                        GGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG                                                                      <  SRR4302543.5947352/94‑1 (MQ=60)

                        GGCGCAGGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAG                                                                      <  SRR4302543.5120/94‑1 (MQ=60)

                         GCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGC                                                                     >  SRR4302543.4792539/1‑94 (MQ=60)

                         GCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGC                                                                     <  SRR4302543.5243453/94‑1 (MQ=60)

                           GCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAA                                                                   >  SRR4302543.4319162/1‑94 (MQ=60)

                            CATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAAT                                                                  >  SRR4302543.3441251/1‑94 (MQ=60)

                             ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT                                                                 >  SRR4302543.7961766/1‑94 (MQ=60)

                             ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT                                                                 >  SRR4302543.4401322/1‑94 (MQ=60)

                             ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT                                                                 >  SRR4302543.2872796/1‑94 (MQ=60)

                             ATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATT                                                                 >  SRR4302543.2122708/1‑94 (MQ=60)

                              TGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTT                                                                >  SRR4302543.5198139/1‑94 (MQ=60)

                              TGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGGACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACCGAAATTT                                                                >  SRR4302543.2654054/1‑94 (MQ=60)

                                  AGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACCGCAATTTTGAT                                                            >  SRR4302543.7653089/1‑94 (MQ=60)

                                  AGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGAT                                                            >  SRR4302543.7653090/1‑94 (MQ=60)

                                  AGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGAT                                                            <  SRR4302543.5198314/94‑1 (MQ=60)

                                   GCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA                                                           <  SRR4302543.4176686/94‑1 (MQ=60)

                                   GCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA                                                           <  SRR4302543.4176687/94‑1 (MQ=60)

                                   GCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA                                                           <  SRR4302543.2104695/94‑1 (MQ=60)

                                   GCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATA                                                           >  SRR4302543.2410711/1‑94 (MQ=60)

                                    CGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATAT                                                          >  SRR4302543.1487693/1‑94 (MQ=60)

                                     GATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCATCTGGCAGACAGCAATTTTGATATC                                                         >  SRR4302543.6593590/1‑94 (MQ=60)

                                     GATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATC                                                         <  SRR4302543.867728/94‑1 (MQ=60)

                                      ATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCG                                                        <  SRR4302543.2424155/94‑1 (MQ=60)

                                      ATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCG                                                        >  SRR4302543.4721514/1‑94 (MQ=60)

                                      ATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCG                                                        <  SRR4302543.6783252/94‑1 (MQ=60)

                                       TTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGC                                                       >  SRR4302543.6077443/1‑94 (MQ=60)

                                        TAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCC                                                      >  SRR4302543.4229284/1‑94 (MQ=60)

                                         AACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCA                                                     <  SRR4302543.6840816/94‑1 (MQ=60)

                                          ACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAG                                                    <  SRR4302543.1616529/94‑1 (MQ=60)

                                           CGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGC                                                   <  SRR4302543.7946117/94‑1 (MQ=60)

                                           CGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGC                                                   >  SRR4302543.7341109/1‑94 (MQ=60)

                                            GAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGTCAGCG                                                  >  SRR4302543.2270665/1‑94 (MQ=60)

                                            GAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCG                                                  >  SRR4302543.4516637/1‑94 (MQ=60)

                                             AGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGT                                                 >  SRR4302543.3725115/1‑94 (MQ=60)

                                              GTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTC                                                >  SRR4302543.2729643/1‑94 (MQ=60)

                                               TCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCG                                               <  SRR4302543.3093241/94‑1 (MQ=60)

                                                CGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGC                                              >  SRR4302543.62726/1‑94 (MQ=60)

                                                CGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGC                                              <  SRR4302543.4929508/94‑1 (MQ=60)

                                                CGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGC                                              >  SRR4302543.1123765/1‑94 (MQ=60)

                                                 GCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCA                                             <  SRR4302543.5668253/94‑1 (MQ=60)

                                                  CTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCAC                                            >  SRR4302543.5341752/1‑94 (MQ=60)

                                                  CTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCAC                                            >  SRR4302543.2734515/1‑94 (MQ=60)

                                                  CTCCATCCACCGATGGATAATAGGGTACGCGAGGCTTGTCAGTGCATCGCGGATCACCTGCCAGACAGAAATTTTGATATCGCCCGCGTGGCAC                                            >  SRR4302543.4562688/1‑94 (MQ=53)

                                                   TCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACA                                           <  SRR4302543.2507479/94‑1 (MQ=60)

                                                     CATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCGGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGC                                         >  SRR4302543.4587492/1‑94 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        <  SRR4302543.6781663/94‑1 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        <  SRR4302543.1365258/94‑1 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        >  SRR4302543.6914762/1‑94 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        >  SRR4302543.1251929/1‑94 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        >  SRR4302543.7812742/1‑94 (MQ=60)

                                                      ATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCA                                        >  SRR4302543.6473092/1‑94 (MQ=60)

                                                       TCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCAT                                       <  SRR4302543.648267/94‑1 (MQ=60)

                                                       TCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCAT                                       >  SRR4302543.6378642/1‑94 (MQ=60)

                                                       TCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCAT                                       >  SRR4302543.1935312/1‑94 (MQ=60)

                                                        CCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACACCATG                                      >  SRR4302543.6103807/1‑94 (MQ=60)

                                                         CACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGT                                     >  SRR4302543.1018956/1‑94 (MQ=60)

                                                           CCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTT                                   >  SRR4302543.2339222/1‑94 (MQ=60)

                                                           CCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTT                                   <  SRR4302543.5897137/94‑1 (MQ=60)

                                                           CCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTT                                   <  SRR4302543.3582660/94‑1 (MQ=60)

                                                           CCGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTT                                   <  SRR4302543.3342012/94‑1 (MQ=60)

                                                            CGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTG                                  <  SRR4302543.309026/94‑1 (MQ=60)

                                                            CGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTG                                  >  SRR4302543.4711990/1‑94 (MQ=60)

                                                            CGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTG                                  >  SRR4302543.1451046/1‑94 (MQ=60)

                                                            CGATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTG                                  <  SRR4302543.1440821/94‑1 (MQ=60)

                                                             GATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGC                                 >  SRR4302543.5856126/1‑94 (MQ=60)

                                                              ATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCT                                >  SRR4302543.5083724/1‑94 (MQ=60)

                                                              ATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCT                                >  SRR4302543.4717452/1‑94 (MQ=60)

                                                              ATGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCT                                <  SRR4302543.1816875/94‑1 (MQ=60)

                                                               TGGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTT                               >  SRR4302543.7374490/1‑94 (MQ=60)

                                                                GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG                              <  SRR4302543.6775662/94‑1 (MQ=60)

                                                                GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG                              <  SRR4302543.2932835/94‑1 (MQ=60)

                                                                GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG                              <  SRR4302543.5960512/94‑1 (MQ=60)

                                                                GGATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTG                              <  SRR4302543.3964932/94‑1 (MQ=60)

                                                                 GATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGT                             <  SRR4302543.1380701/94‑1 (MQ=60)

                                                                 GATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGT                             <  SRR4302543.1677762/94‑1 (MQ=60)

                                                                 GATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGT                             >  SRR4302543.5077524/1‑94 (MQ=60)

                                                                  ATAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTC                            >  SRR4302543.6116297/1‑94 (MQ=60)

                                                                   TAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCG                           <  SRR4302543.659994/94‑1 (MQ=60)

                                                                   TAATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCG                           <  SRR4302543.265851/94‑1 (MQ=60)

                                                                     ATCGGGTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCC                         <  SRR4302543.327556/94‑1 (MQ=60)

                                                                      TCGGGTACGCGAGGCTCGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCG                        <  SRR4302543.7144794/94‑1 (MQ=60)

                                                                       CGGGTACGCGAGGCTTGTCAGTGCATCAGCAATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGT                       <  SRR4302543.4146656/94‑1 (MQ=60)

                                                                          GTACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGC                    <  SRR4302543.5367056/94‑1 (MQ=60)

                                                                           TACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCTGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCG                   >  SRR4302543.4880390/1‑94 (MQ=60)

                                                                           TACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCG                   >  SRR4302543.3953599/1‑94 (MQ=60)

                                                                            ACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGT                  >  SRR4302543.1714474/1‑94 (MQ=60)

                                                                            ACGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGT                  >  SRR4302543.1198033/1‑94 (MQ=60)

                                                                             CGCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTC                 >  SRR4302543.551395/1‑94 (MQ=60)

                                                                              GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT                <  SRR4302543.2965638/94‑1 (MQ=60)

                                                                              GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT                <  SRR4302543.6851377/94‑1 (MQ=60)

                                                                              GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT                <  SRR4302543.4431110/94‑1 (MQ=60)

                                                                              GCGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCT                <  SRR4302543.660886/94‑1 (MQ=60)

                                                                               CGAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTG               <  SRR4302543.342761/94‑1 (MQ=60)

                                                                                GAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGT              <  SRR4302543.2624543/94‑1 (MQ=60)

                                                                                GAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGT              >  SRR4302543.7942509/1‑94 (MQ=60)

                                                                                GAGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGT              >  SRR4302543.2843467/1‑94 (MQ=60)

                                                                                 AGGCTTGTCAGTGCGTCAGAGATCCCCTTGCAGACAGGAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTC             <  SRR4302543.5772202/94‑1 (MQ=60)

                                                                                 AGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTC             <  SRR4302543.5772203/94‑1 (MQ=60)

                                                                                 AGGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTC             <  SRR4302543.3787372/94‑1 (MQ=60)

                                                                                  GGCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCA            >  SRR4302543.4869814/1‑94 (MQ=60)

                                                                                   GCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCAC           <  SRR4302543.119685/94‑1 (MQ=60)

                                                                                   GCTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCAC           <  SRR4302543.119684/94‑1 (MQ=60)

                                                                                    CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA          <  SRR4302543.3772660/94‑1 (MQ=60)

                                                                                    CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA          >  SRR4302543.6193949/1‑94 (MQ=60)

                                                                                    CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA          >  SRR4302543.2182845/1‑94 (MQ=60)

                                                                                    CTTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACA          >  SRR4302543.2182846/1‑94 (MQ=60)

                                                                                     TTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACAT         <  SRR4302543.7395828/94‑1 (MQ=60)

                                                                                     TTGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACAT         <  SRR4302543.3729145/94‑1 (MQ=60)

                                                                                      TGTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATC        >  SRR4302543.4035908/1‑94 (MQ=60)

                                                                                       GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT       >  SRR4302543.3624741/1‑94 (MQ=60)

                                                                                       GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT       <  SRR4302543.3943031/94‑1 (MQ=60)

                                                                                       GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT       <  SRR4302543.7858557/94‑1 (MQ=60)

                                                                                       GTCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCT       <  SRR4302543.5285808/94‑1 (MQ=60)

                                                                                        TCAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTT      >  SRR4302543.1816348/1‑94 (MQ=60)

                                                                                         CAGTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTT     <  SRR4302543.2609924/94‑1 (MQ=60)

                                                                                           GTGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTC   <  SRR4302543.5600894/94‑1 (MQ=60)

                                                                                            TGCATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCC  <  SRR4302543.3866551/94‑1 (MQ=60)

ATCTGCTTGAGCAATTGTTACTGCGGCGCATGGAAGCGATTAACGAGTCGCTCCATCCACCGATGGATAATCGGGTACGCGAGGCTTGTCAGTACATCAGCGATCACCTGGCAGACAGCAATTTTGATATCGCCAGCGTCGCACAGCATGTTTGCTTGTCGCCGTCGCGTCTGTCACATCTTTTCC  >  NC_000913/70847‑71032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`