Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,871,984 |
A→G |
E129E (GAA→GAG) |
yeaK → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,871,984 | 0 | A | G | 98.6%
| 427.6
/ ‑3.3
| 139 | E129E (GAA→GAG) | yeaK | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (73/64); total (74/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01 |
Only 100 of 140 total aligned reads displayed.
GATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA > NC_000913/1871895‑1872073
|
aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt > 2:3215458/1‑93 (MQ=255)
aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt < 2:2011445/93‑1 (MQ=255)
aTGAACGCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt < 2:48459/93‑1 (MQ=255)
tGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt > 2:2564527/1‑93 (MQ=255)
tGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt > 1:3262092/1‑93 (MQ=255)
tGAACTCACAGGCTGGTGCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt < 2:45153/93‑1 (MQ=255)
gAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAttt < 1:3382811/93‑1 (MQ=255)
aaCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtg < 1:4059298/93‑1 (MQ=255)
aCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTCCTCTTCGAGCGATTtga > 2:1298473/1‑93 (MQ=255)
tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg > 1:4539448/1‑93 (MQ=255)
cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga < 2:4065530/93‑1 (MQ=255)
cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga > 2:215516/1‑93 (MQ=255)
caGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGaaa < 1:3024761/93‑1 (MQ=255)
gCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCg > 1:3250520/1‑93 (MQ=255)
cTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGc > 1:2200551/1‑93 (MQ=255)
cTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGc > 2:1849000/1‑93 (MQ=255)
tgtgTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGct > 1:839741/1‑92 (MQ=255)
gtgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt < 1:3944876/93‑1 (MQ=255)
gtgtCTGCGGCGCAACCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt < 2:3699813/93‑1 (MQ=255)
gtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTc < 2:4138699/93‑1 (MQ=255)
tCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCa < 1:200615/93‑1 (MQ=255)
ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt > 2:4078841/1‑93 (MQ=255)
ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt > 2:3483729/1‑93 (MQ=255)
ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt < 2:2969445/93‑1 (MQ=255)
ttCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAt < 1:2238869/93‑1 (MQ=255)
ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa < 1:1538989/93‑1 (MQ=255)
ggCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCa < 1:3713850/93‑1 (MQ=255)
gcgcGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAg < 1:3089804/93‑1 (MQ=255)
cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa < 2:237767/93‑1 (MQ=255)
cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa > 2:483310/1‑93 (MQ=255)
gATCCCCCCTTTCAGCTTCCATCCAACACTCAACCTGGTTGCCGTCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt < 1:1792597/93‑1 (MQ=255)
gATCCCCCCTTTCAGCTTCAATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt > 2:772597/1‑93 (MQ=255)
aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg > 2:449915/1‑93 (MQ=255)
tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc < 2:3107388/93‑1 (MQ=255)
tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc > 1:487719/1‑93 (MQ=255)
tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc > 1:2675871/1‑93 (MQ=255)
ccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCt < 2:2825192/93‑1 (MQ=255)
cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg > 2:1276720/1‑93 (MQ=255)
cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg > 1:2389235/1‑93 (MQ=255)
ccccTTTCCGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTgg > 2:4584069/1‑93 (MQ=255)
ccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTgg > 2:2125048/1‑93 (MQ=255)
ccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTgg > 1:3478084/1‑93 (MQ=255)
cccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGa < 2:1533533/93‑1 (MQ=255)
ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt < 1:4018599/93‑1 (MQ=255)
ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt < 2:2097919/93‑1 (MQ=255)
ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt > 2:751942/1‑93 (MQ=255)
tttCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaa < 2:1925133/93‑1 (MQ=255)
ttCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaaa < 2:2171068/93‑1 (MQ=255)
ttCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaaa < 1:4482115/93‑1 (MQ=255)
cAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATc < 2:2786534/93‑1 (MQ=255)
aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATcc < 1:3415622/93‑1 (MQ=255)
cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt > 1:1047547/1‑93 (MQ=255)
ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt > 1:1261887/1‑93 (MQ=255)
ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt < 1:1509124/93‑1 (MQ=255)
ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt > 2:43178/1‑93 (MQ=255)
ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt > 2:3187056/1‑93 (MQ=255)
catccaAAACTCAAACTGGTTTCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt < 1:4190230/93‑1 (MQ=255)
catccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt > 1:4134634/1‑93 (MQ=255)
atccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt < 1:979058/93‑1 (MQ=255)
atccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAttt > 2:4361613/1‑93 (MQ=255)
tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGCTCAATCCGTTAtttt > 1:4642079/1‑93 (MQ=255)
tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt < 2:1360578/93‑1 (MQ=255)
tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt > 2:3408896/1‑93 (MQ=255)
tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt < 2:2541728/93‑1 (MQ=255)
aaaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaa > 2:3641027/1‑93 (MQ=255)
aaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGaaaa < 1:3683585/93‑1 (MQ=255)
aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc < 1:986875/93‑1 (MQ=255)
cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc > 1:4378302/1‑93 (MQ=255)
cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc < 2:1088270/93‑1 (MQ=255)
tCAAACTGGTTGCCGACCCTCTACTCTTCCAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcg > 1:2044863/1‑93 (MQ=255)
cAAACTGGTTGCCGACCCTGTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgc < 1:1190251/93‑1 (MQ=255)
aaaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgcg > 2:4014526/1‑93 (MQ=255)
aaaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgcg > 2:1835584/1‑93 (MQ=255)
aaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCgg > 2:2309668/1‑93 (MQ=255)
aaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCgg > 1:2212310/1‑93 (MQ=255)
aCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGa > 2:4167668/1‑93 (MQ=255)
cTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGat > 1:612375/1‑93 (MQ=255)
tGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatt < 1:3961585/93‑1 (MQ=255)
ggtGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATACGTTATTTTGAAAACCGCGGattat > 1:4529112/3‑93 (MQ=255)
ttGCCGTCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattatt < 1:2808979/93‑1 (MQ=255)
ttGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattatt > 2:1630402/1‑93 (MQ=255)
tGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAttt < 1:1561295/93‑1 (MQ=255)
tGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCAGTTATTTTGAAAACCGCGGATTAttt > 1:4058306/1‑93 (MQ=255)
tGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAttt < 1:1320329/93‑1 (MQ=255)
ccGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgc < 2:2814403/93‑1 (MQ=255)
cccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcat > 2:1070401/1‑93 (MQ=255)
ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt < 1:2857503/93‑1 (MQ=255)
ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt > 2:2731716/1‑93 (MQ=255)
ccTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcatt < 2:4302867/93‑1 (MQ=255)
ctctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattg < 2:1963339/93‑1 (MQ=255)
ctctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattg > 1:4362620/1‑93 (MQ=255)
tctACTCTTTGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgg > 2:1246955/1‑92 (MQ=255)
tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATTCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc > 1:4125675/1‑93 (MQ=255)
tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc > 2:1589673/1‑93 (MQ=255)
tctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgc < 2:2560126/93‑1 (MQ=255)
ctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcg > 1:1858659/1‑93 (MQ=255)
tACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgc > 1:1023639/1‑93 (MQ=255)
tACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgc < 2:3312907/93‑1 (MQ=255)
tctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAc > 1:3478563/1‑93 (MQ=255)
ctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAcc > 1:2017686/1‑93 (MQ=255)
|
GATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA > NC_000913/1871895‑1872073
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT > NC_000913/1871891‑1872076
|
AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAG > SRR4302535.2092099/1‑94 (MQ=60)
AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAG < SRR4302535.2591139/94‑1 (MQ=60)
GTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGC < SRR4302535.1386548/94‑1 (MQ=60)
TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG < SRR4302535.2467231/94‑1 (MQ=60)
GATGAACTCACAGGCTGTGTCTTCGGCCCCATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGCCCCTCTACTCTTCGAGCGAT < SRR4302535.4100181/94‑1 (MQ=60)
ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT > SRR4302535.3284751/1‑94 (MQ=60)
GAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTG < SRR4302535.3406328/94‑1 (MQ=60)
AACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGA < SRR4302535.4087081/94‑1 (MQ=60)
CTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATG > SRR4302535.4570497/1‑94 (MQ=60)
CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAA < SRR4302535.4352895/94‑1 (MQ=60)
CAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAT < SRR4302535.3045936/94‑1 (MQ=60)
GGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCG > SRR4302535.3273103/1‑94 (MQ=60)
GCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGC > SRR4302535.2216238/1‑94 (MQ=60)
CTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCT > SRR4302535.845639/1‑94 (MQ=60)
GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT < SRR4302535.4069417/94‑1 (MQ=60)
GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT < SRR4302535.3971813/94‑1 (MQ=60)
GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT > SRR4302535.3583/1‑94 (MQ=60)
TCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAA < SRR4302535.201987/94‑1 (MQ=60)
TTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATG < SRR4302535.2254799/94‑1 (MQ=60)
GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG < SRR4302535.3739580/94‑1 (MQ=60)
GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG < SRR4302535.1550081/94‑1 (MQ=60)
GCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGG < SRR4302535.987886/94‑1 (MQ=60)
GCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGG < SRR4302535.3111323/94‑1 (MQ=60)
CGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGC < SRR4302535.3904679/94‑1 (MQ=60)
GATCCCCCCTTTCAGCTTCCATCCAACACTCAACCTGGTTGCCGTCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG < SRR4302535.1805557/94‑1 (MQ=60)
ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC > SRR4302535.2695016/1‑94 (MQ=60)
ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC > SRR4302535.491138/1‑94 (MQ=60)
CCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTG > SRR4302535.2406410/1‑94 (MQ=60)
CCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGG > SRR4302535.3502253/1‑94 (MQ=60)
CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA < SRR4302535.4046094/94‑1 (MQ=60)
TTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAT < SRR4302535.4512877/94‑1 (MQ=60)
AGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCG < SRR4302535.3439380/94‑1 (MQ=60)
GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT > SRR4302535.2950580/1‑94 (MQ=60)
GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT > SRR4302535.1054975/1‑94 (MQ=60)
CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT < SRR4302535.543448/94‑1 (MQ=60)
CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT > SRR4302535.1270916/1‑94 (MQ=60)
TTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTA < SRR4302535.1519997/94‑1 (MQ=60)
TTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTA > SRR4302535.3418574/1‑94 (MQ=60)
CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT > SRR4302535.4162947/1‑94 (MQ=60)
CATCCAAAACTCAAACTGGTTTCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTT < SRR4302535.4218908/94‑1 (MQ=60)
ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGCTCAATCCGTTATTTT > SRR4302535.4673545/1‑94 (MQ=60)
ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT < SRR4302535.986019/94‑1 (MQ=60)
AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC < SRR4302535.3709073/94‑1 (MQ=60)
ACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC > SRR4302535.4408260/1‑94 (MQ=60)
ACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC < SRR4302535.993888/94‑1 (MQ=60)
CTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG > SRR4302535.2242729/1‑94 (MQ=60)
CTCAAACTGGTTGCCGACCCTCTACTCTTCCAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCG > SRR4302535.2059593/1‑94 (MQ=60)
TCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGC > SRR4302535.1958891/1‑94 (MQ=60)
CAAACTGGTTGCCGACCCTGTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCG < SRR4302535.1198772/94‑1 (MQ=60)
AAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGG > SRR4302535.2228066/1‑94 (MQ=60)
ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT > SRR4302535.616636/1‑94 (MQ=60)
CTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATT > SRR4302535.1772319/1‑94 (MQ=60)
CTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATT > SRR4302535.4502587/1‑94 (MQ=60)
TGGTTGCCGACCCTCTACTCTTCGAGCGATTTGCTGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTA > SRR4302535.2768535/1‑94 (MQ=60)
TGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTA > SRR4302535.2116225/1‑94 (MQ=60)
TGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTA < SRR4302535.3988639/94‑1 (MQ=60)
GGGTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATACGTTATTTTGAAAACCGCGGATTAT > SRR4302535.4560123/1‑94 (MQ=60)
TTGCCGTCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTT < SRR4302535.2828950/94‑1 (MQ=60)
TTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCAGTTATTTTGAAAACCGCGGATTATTT > SRR4302535.4086084/1‑94 (MQ=60)
TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG < SRR4302535.1572545/94‑1 (MQ=60)
TGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG < SRR4302535.1329761/94‑1 (MQ=60)
CCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATT < SRR4302535.1428117/94‑1 (MQ=60)
CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG > SRR4302535.4392475/1‑94 (MQ=60)
CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG < SRR4302535.2877745/94‑1 (MQ=60)
CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG < SRR4302535.1204123/94‑1 (MQ=60)
CTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATTCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGC > SRR4302535.4153910/1‑94 (MQ=60)
TCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCG > SRR4302535.1872062/1‑94 (MQ=60)
CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC > SRR4302535.1030912/1‑94 (MQ=60)
CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC > SRR4302535.4634/1‑94 (MQ=60)
CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC > SRR4302535.3502733/1‑94 (MQ=60)
TCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACC > SRR4302535.2032222/1‑94 (MQ=60)
TCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACC < SRR4302535.3279381/94‑1 (MQ=60)
AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT > SRR4302535.3283815/1‑94 (MQ=60)
AGCGATTTGATGAAAACGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT > SRR4302535.1551099/1‑94 (MQ=60)
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AGTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT > NC_000913/1871891‑1872076
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
