Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,871,984	A→G	E129E (GAA→GAG)	yeaK →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,871,984	0	A	G	100.0%	817.1 / NA	257	E129E (GAA→GAG)	yeaK	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (129/128); total (129/128)

Only 100 of 261 total aligned reads displayed.

ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA  >  NC_000913/1871896‑1872073

aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       <  1:223371/93‑1 (MQ=255)

aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       <  1:2661931/93‑1 (MQ=255)

aTGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAt                                                                                       <  1:4953781/93‑1 (MQ=255)

 tGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGAtt                                                                                      >  2:7440183/1‑93 (MQ=255)

    aCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtga                                                                                   <  2:2660260/93‑1 (MQ=255)

    aCTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtga                                                                                   <  1:4853103/93‑1 (MQ=255)

     cTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgat                                                                                  >  1:3806229/1‑93 (MQ=255)

      tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg                                                                                 >  2:7697379/1‑93 (MQ=255)

      tCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatg                                                                                 <  2:5108901/93‑1 (MQ=255)

       cacaGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTtgatga                                                                                <  1:3142635/93‑1 (MQ=255)

          aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                             <  2:6154312/93‑1 (MQ=255)

          aGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAAt                                                                             <  2:2097032/93‑1 (MQ=255)

           ggCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATc                                                                            <  2:4674103/93‑1 (MQ=255)

            gCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCg                                                                           <  1:2829324/93‑1 (MQ=255)

               gtgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt                                                                        <  1:6078443/93‑1 (MQ=255)

               gtgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCt                                                                        <  1:661315/93‑1 (MQ=255)

                tgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCtt                                                                       <  2:5639736/93‑1 (MQ=255)

                tgtCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCtt                                                                       >  1:5605538/1‑93 (MQ=255)

                tgtCTTCGGCGCGATCCCCCCTTTCAGCTGCCATCAAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCtt                                                                       <  1:6475777/93‑1 (MQ=255)

                 ggcTTCGGCGCGATCCCCCCGTTCAGCTGCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTc                                                                      <  2:6039585/91‑1 (MQ=255)

                   cTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCaa                                                                    >  1:2354083/1‑93 (MQ=255)

                     tCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATg                                                                  <  1:898677/93‑1 (MQ=255)

                         cgcgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAgg                                                              >  1:2078360/1‑93 (MQ=255)

                           cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa                                                            <  1:4148241/93‑1 (MQ=255)

                           cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa                                                            <  2:645390/93‑1 (MQ=255)

                           cgATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCa                                                            <  2:7356200/93‑1 (MQ=255)

                            gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                           <  2:6435133/93‑1 (MQ=255)

                            gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                           >  1:7780905/1‑93 (MQ=255)

                            gATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAt                                                           >  2:1855722/1‑93 (MQ=255)

                             acccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          <  2:3292292/91‑1 (MQ=255)

                             aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          <  2:3249047/93‑1 (MQ=255)

                             aTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATg                                                          >  2:146084/1‑93 (MQ=255)

                              tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc                                                         >  2:3189830/1‑93 (MQ=255)

                              tCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGc                                                         >  1:2953789/1‑93 (MQ=255)

                               ccccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCt                                                        <  2:3421383/93‑1 (MQ=255)

                                cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg                                                       >  2:1770898/1‑93 (MQ=255)

                                cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg                                                       >  1:428506/1‑93 (MQ=255)

                                cccccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTg                                                       <  2:431421/93‑1 (MQ=255)

                                   ccTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAt                                                    >  1:4494992/1‑93 (MQ=255)

                                    cTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATa                                                   <  2:4225754/93‑1 (MQ=255)

                                    cTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATa                                                   >  1:3660798/1‑93 (MQ=255)

                                     tttCAGCTTCCATCCAAAACTCAAGCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaa                                                  >  1:5537786/1‑93 (MQ=255)

                                      ttCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATaaa                                                 >  2:2601554/1‑93 (MQ=255)

                                       tCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAt                                                >  1:1707649/1‑93 (MQ=255)

                                       tCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAt                                                >  2:158639/1‑93 (MQ=255)

                                         aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAtac                                              >  1:4361041/1‑91 (MQ=255)

                                         aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATcc                                              >  2:7621529/1‑93 (MQ=255)

                                         aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATcc                                              >  2:67263/1‑93 (MQ=255)

                                         aGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATcc                                              >  2:3903651/1‑93 (MQ=255)

                                          gCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCg                                             <  2:2776568/93‑1 (MQ=255)

                                           cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                            >  1:4609739/1‑93 (MQ=255)

                                           cTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGt                                            >  2:305409/1‑93 (MQ=255)

                                            ttCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGtt                                           >  1:1328103/1‑93 (MQ=255)

                                             tccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTa                                          >  2:3980612/1‑93 (MQ=255)

                                             tccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTa                                          <  1:5125935/93‑1 (MQ=255)

                                              ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                         <  1:5405626/93‑1 (MQ=255)

                                              ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                         <  2:4843928/93‑1 (MQ=255)

                                              ccatccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAt                                         >  1:5816585/1‑93 (MQ=255)

                                               catccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt                                        <  2:3722858/93‑1 (MQ=255)

                                               catccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtt                                        >  1:6343426/1‑93 (MQ=255)

                                                 tccaAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAtttt                                      >  2:2161623/1‑93 (MQ=255)

                                                   caAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGa                                    <  2:7115270/93‑1 (MQ=255)

                                                   caAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGa                                    >  1:5210073/1‑93 (MQ=255)

                                                    aaaaCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTTaa                                   >  1:5839142/1‑93 (MQ=255)

                                                       aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc                                <  1:1215098/93‑1 (MQ=255)

                                                       aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc                                >  1:7079250/1‑93 (MQ=255)

                                                       aCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAc                                >  2:3566394/1‑93 (MQ=255)

                                                        cTCAAACTGGTTGCCGACCCTGCTCTCTTCGAGCCATTTGATGAAATCGCCTTCAATGCAGGAATGCTGGAAAAATCCGTTATTTTGAAAAcc                               <  2:1047769/93‑1 (MQ=255)

                                                        cTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAcc                               <  2:50759/93‑1 (MQ=255)

                                                         tCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcg                              >  2:3012086/1‑93 (MQ=255)

                                                           aaaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACcgcg                            >  2:5930000/1‑93 (MQ=255)

                                                           aaaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGATGGATAAATCCGTTATTTTTAAAACcgcg                            >  2:5419417/1‑93 (MQ=255)

                                                            aaCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCgg                           >  1:5733544/1‑93 (MQ=255)

                                                             aCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGa                          <  1:1056553/93‑1 (MQ=255)

                                                               tGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatt                        >  2:6273987/1‑93 (MQ=255)

                                                               tGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatt                        >  2:5911390/1‑93 (MQ=255)

                                                                ggTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatta                       <  1:5277284/93‑1 (MQ=255)

                                                                ggTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGatta                       <  1:2515273/93‑1 (MQ=255)

                                                                ggTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCGGGATAAATCCGTTATTTTGAAAACCGCGGatta                       >  1:7640103/1‑93 (MQ=255)

                                                                 gTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattat                      >  1:6334959/1‑93 (MQ=255)

                                                                 gTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattat                      >  2:6891380/1‑93 (MQ=255)

                                                                  ttGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGattatt                     <  1:2307769/93‑1 (MQ=255)

                                                                   tGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAttt                    <  1:731924/93‑1 (MQ=255)

                                                                   tGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAACCGTTATTTTGAAAACCGCGGATTAttt                    <  2:1993217/93‑1 (MQ=255)

                                                                    gCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttg                   >  2:7086479/1‑93 (MQ=255)

                                                                    gCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttg                   >  1:2740476/1‑93 (MQ=255)

                                                                      cGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcg                 >  2:5457733/1‑93 (MQ=255)

                                                                       gACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgc                >  2:122868/1‑93 (MQ=255)

                                                                        aCCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgca               >  1:84626/1‑93 (MQ=255)

                                                                           ctctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattg            >  2:2863043/1‑93 (MQ=255)

                                                                           ctctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattg            >  1:4113687/1‑93 (MQ=255)

                                                                            tctGCTCTTCGAGCGATTTGATGAAAGCGGCTGCAATGCAGGCACGCTGGATAAATCCGTTATTCTGAAATCCGCGGATAATttgcgcattgc           <  2:7771762/93‑1 (MQ=255)

                                                                             ctACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcg          >  2:448382/1‑93 (MQ=255)

                                                                              tACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgc         >  1:5439241/1‑93 (MQ=255)

                                                                               aCTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATttgcgcattgcgca        >  2:4905028/1‑93 (MQ=255)

                                                                                 tctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAc      <  2:1327973/93‑1 (MQ=255)

                                                                                 tctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAc      <  2:2511184/93‑1 (MQ=255)

                                                                                 tctTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAc      >  1:7536024/1‑93 (MQ=255)

                                                                                    tCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAg   <  1:1140699/93‑1 (MQ=255)

                                                                                     cGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGa  >  1:6796990/1‑93 (MQ=255)

ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA  >  NC_000913/1871896‑1872073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871892‑1872077

GTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGC                                                                                              >  SRR4302543.301986/1‑94 (MQ=60)

 TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG                                                                                             <  SRR4302543.8002900/94‑1 (MQ=60)

 TCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCG                                                                                             <  SRR4302543.8002899/94‑1 (MQ=60)

   GATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCTAGCGAT                                                                                           >  SRR4302543.7749231/1‑94 (MQ=60)

    ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT                                                                                          <  SRR4302543.4998892/94‑1 (MQ=60)

    ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT                                                                                          <  SRR4302543.2686064/94‑1 (MQ=60)

    ATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATT                                                                                          <  SRR4302543.225300/94‑1 (MQ=60)

     TGAGCTCACAGGCTGTGTGTGCGGCTCGATCCACCCTTTCAGCTGCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTT                                                                                         <  SRR4302543.1344423/94‑1 (MQ=60)

     TGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTT                                                                                         <  SRR4302543.891767/94‑1 (MQ=60)

      GAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTG                                                                                        >  SRR4302543.2558165/1‑94 (MQ=60)

       AACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGA                                                                                       >  SRR4302543.2533983/1‑94 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGCTCCCCCCTTTCAGCTTCCATCCAAAACTCAAACGGGTTGCCGACCCTCTCCTCTTCGAGCGATTTGAT                                                                                      <  SRR4302543.4048657/94‑1 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      >  SRR4302543.3839775/1‑94 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      <  SRR4302543.5884315/94‑1 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      <  SRR4302543.850547/94‑1 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGAT                                                                                      <  SRR4302543.4897357/94‑1 (MQ=60)

        ACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCCCTACTCTTCGAGCGATTTGAT                                                                                      <  SRR4302543.5229423/94‑1 (MQ=60)

         CTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATG                                                                                     <  SRR4302543.2812646/94‑1 (MQ=60)

           CACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAA                                                                                   <  SRR4302543.3170900/94‑1 (MQ=60)

            ACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAA                                                                                  <  SRR4302543.3120521/94‑1 (MQ=60)

             CAGGCTGTGTCTTCGGCGCGCCCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGTTTGCCGCCCCTCTACTCTTCGAGCGATTTGATGAAAT                                                                                 <  SRR4302543.2288631/94‑1 (MQ=60)

             CAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGACTTGATGAAAT                                                                                 >  SRR4302543.5083134/1‑94 (MQ=60)

              AGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATC                                                                                <  SRR4302543.115610/94‑1 (MQ=60)

                GCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGC                                                                              <  SRR4302543.2855205/94‑1 (MQ=60)

                GCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGC                                                                              >  SRR4302543.2838981/1‑94 (MQ=60)

                 CTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCC                                                                             >  SRR4302543.2040043/1‑94 (MQ=60)

                  TGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCT                                                                            <  SRR4302543.7412468/94‑1 (MQ=60)

                   GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           >  SRR4302543.5656611/1‑94 (MQ=60)

                   GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           <  SRR4302543.667391/94‑1 (MQ=60)

                   GTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTT                                                                           <  SRR4302543.6136053/94‑1 (MQ=60)

                    TGTCTTCGGCGCGATCCCCCCTTTCAGCTGCCATCAAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTC                                                                          <  SRR4302543.6536790/94‑1 (MQ=60)

                     GTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAACCTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCA                                                                         <  SRR4302543.4342373/94‑1 (MQ=60)

                     GTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCA                                                                         >  SRR4302543.6278690/1‑94 (MQ=60)

                      TCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAA                                                                        >  SRR4302543.2375433/1‑94 (MQ=60)

                      TCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAA                                                                        <  SRR4302543.6075433/94‑1 (MQ=60)

                       CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302543.2369195/94‑1 (MQ=60)

                       CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       >  SRR4302543.6835577/1‑94 (MQ=60)

                       CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302543.1638479/94‑1 (MQ=60)

                       CTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAAT                                                                       <  SRR4302543.4108694/94‑1 (MQ=60)

                         TCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGC                                                                     <  SRR4302543.906612/94‑1 (MQ=60)

                          CGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCA                                                                    <  SRR4302543.6439743/94‑1 (MQ=60)

                           GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG                                                                   <  SRR4302543.7438358/94‑1 (MQ=60)

                           GGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAG                                                                   <  SRR4302543.1155815/94‑1 (MQ=60)

                            GCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGG                                                                  >  SRR4302543.2096916/1‑94 (MQ=60)

                             CGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGC                                                                 >  SRR4302543.968558/1‑94 (MQ=60)

                               CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302543.3536131/94‑1 (MQ=60)

                               CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302543.4185739/94‑1 (MQ=60)

                               CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               <  SRR4302543.3754384/94‑1 (MQ=60)

                               CGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCAT                                                               >  SRR4302543.7854270/1‑94 (MQ=60)

                                GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              >  SRR4302543.6015738/1‑94 (MQ=60)

                                GATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATG                                                              <  SRR4302543.5026941/94‑1 (MQ=60)

                                 ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC                                                             >  SRR4302543.5835595/1‑94 (MQ=60)

                                 ATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGC                                                             >  SRR4302543.2980608/1‑94 (MQ=60)

                                   CCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTG                                                           >  SRR4302543.432522/1‑94 (MQ=60)

                                   CCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTG                                                           <  SRR4302543.1321388/94‑1 (MQ=60)

                                      CCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGAT                                                        >  SRR4302543.4535844/1‑94 (MQ=60)

                                       CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302543.5390453/1‑94 (MQ=60)

                                       CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302543.7280706/1‑94 (MQ=60)

                                       CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302543.5296807/1‑94 (MQ=60)

                                       CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302543.3692948/1‑94 (MQ=60)

                                       CCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATCCTGGATA                                                       >  SRR4302543.5390454/1‑94 (MQ=60)

                                       CCCTTCAGCTTCCATCCAAAACTCAAACTGCTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATA                                                       >  SRR4302543.5718071/1‑94 (MQ=60)

                                        CTTTCAGCTTCCATCCAAAACTCAAGCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      >  SRR4302543.5588135/1‑94 (MQ=60)

                                        CTTTCAGCTTCCATCCAAAACTCAAGCTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      >  SRR4302543.5588134/1‑94 (MQ=60)

                                        CTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      >  SRR4302543.2217871/1‑94 (MQ=60)

                                        CTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      <  SRR4302543.4248309/94‑1 (MQ=60)

                                        CTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAA                                                      >  SRR4302543.2283046/1‑94 (MQ=60)

                                          TTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAAT                                                    >  SRR4302543.1722934/1‑94 (MQ=60)

                                           TCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATC                                                   <  SRR4302543.1834908/94‑1 (MQ=60)

                                            CAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATAC                                                  >  SRR4302543.4400555/1‑94 (MQ=60)

                                              GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                >  SRR4302543.6508961/1‑94 (MQ=60)

                                              GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                <  SRR4302543.5532388/94‑1 (MQ=60)

                                              GCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGT                                                >  SRR4302543.4651613/1‑94 (MQ=60)

                                               CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               >  SRR4302543.7672448/1‑94 (MQ=60)

                                               CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               >  SRR4302543.910845/1‑94 (MQ=60)

                                               CTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTT                                               >  SRR4302543.1339933/1‑94 (MQ=60)

                                               ATTCCATCCAAAACTGAAAATGGTTGCCGACTCTCTCCTCTTAGAGAGATTGGATGAAATCGCCTACAATGCAGGCATGCTGGATAAATCCGTT                                               <  SRR4302543.4717102/94‑1 (MQ=50)

                                                TTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTA                                              >  SRR4302543.3440985/1‑94 (MQ=60)

                                                 TCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAT                                             <  SRR4302543.5172274/94‑1 (MQ=60)

                                                 TCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAT                                             <  SRR4302543.2259610/94‑1 (MQ=60)

                                                 TCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTAT                                             >  SRR4302543.5869482/1‑94 (MQ=60)

                                                  CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT                                            >  SRR4302543.6719464/1‑94 (MQ=60)

                                                  CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT                                            <  SRR4302543.5454765/94‑1 (MQ=60)

                                                  CCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATT                                            >  SRR4302543.6403075/1‑94 (MQ=60)

                                                    ATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTT                                          >  SRR4302543.6650422/1‑94 (MQ=60)

                                                      CCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGA                                        >  SRR4302543.5257018/1‑94 (MQ=60)

                                                       CAAAACTCAAACTTGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAA                                       <  SRR4302543.3078135/94‑1 (MQ=60)

                                                       CAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTTAA                                       >  SRR4302543.5892261/1‑94 (MQ=60)

                                                       CAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAA                                       >  SRR4302543.4413127/1‑94 (MQ=60)

                                                       CAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAA                                       <  SRR4302543.4176585/94‑1 (MQ=60)

                                                         AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     <  SRR4302543.5508218/94‑1 (MQ=60)

                                                         AAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAA                                     <  SRR4302543.111902/94‑1 (MQ=60)

                                                          AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    >  SRR4302543.7061291/1‑94 (MQ=60)

                                                          AACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAAC                                    >  SRR4302543.7147995/1‑94 (MQ=60)

                                                           ACTCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACC                                   <  SRR4302543.1226014/94‑1 (MQ=60)

                                                             TCAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGC                                 >  SRR4302543.2970073/1‑94 (MQ=60)

                                                              CAAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCG                                <  SRR4302543.2572577/94‑1 (MQ=60)

                                                               AAACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGG                               >  SRR4302543.5785854/1‑94 (MQ=60)

                                                                 ACTGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGAT                             <  SRR4302543.1066036/94‑1 (MQ=60)

                                                                   TGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTA                           >  SRR4302543.5723350/1‑94 (MQ=60)

                                                                   TGGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCGGGATAAATCCGTTATTTTGAAAACCGCGGATTA                           >  SRR4302543.7712576/1‑94 (MQ=60)

                                                                    GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          <  SRR4302543.5459526/94‑1 (MQ=60)

                                                                    GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          >  SRR4302543.6394535/1‑94 (MQ=60)

                                                                    GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          <  SRR4302543.5324895/94‑1 (MQ=60)

                                                                    GGTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTAT                          <  SRR4302543.2538117/94‑1 (MQ=60)

                                                                     GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         <  SRR4302543.6399027/94‑1 (MQ=60)

                                                                     GTTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATT                         <  SRR4302543.6399028/94‑1 (MQ=60)

                                                                      TTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTT                        <  SRR4302543.2328783/94‑1 (MQ=60)

                                                                      GTGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTT                        <  SRR4302543.585847/94‑1 (MQ=60)

                                                                       TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       <  SRR4302543.738484/94‑1 (MQ=60)

                                                                       TGCCGACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTG                       >  SRR4302543.2765404/1‑94 (MQ=60)

                                                                           GACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAGATCCGTTATTTTGAAAACCGCGGATTATTTGCGCT                   >  SRR4302543.4676839/1‑94 (MQ=60)

                                                                           GACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCA                   >  SRR4302543.85406/1‑94 (MQ=60)

                                                                            ACCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCAT                  >  SRR4302543.2757984/1‑94 (MQ=60)

                                                                             CCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATT                 >  SRR4302543.420808/1‑94 (MQ=60)

                                                                             CCCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATT                 <  SRR4302543.4342503/94‑1 (MQ=60)

                                                                              CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                >  SRR4302543.6861798/1‑94 (MQ=60)

                                                                              CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                >  SRR4302543.4150736/1‑94 (MQ=60)

                                                                              CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                >  SRR4302543.849074/1‑94 (MQ=60)

                                                                              CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                <  SRR4302543.4625297/94‑1 (MQ=60)

                                                                              CCTCTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTG                <  SRR4302543.4720400/94‑1 (MQ=60)

                                                                                 CTACTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGC             >  SRR4302543.5488623/1‑94 (MQ=60)

                                                                                    CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302543.7607876/1‑94 (MQ=60)

                                                                                    CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302543.7836657/1‑94 (MQ=60)

                                                                                    CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302543.4605581/1‑94 (MQ=60)

                                                                                    CTCTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAAC          >  SRR4302543.4976110/1‑94 (MQ=60)

                                                                                      CTTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCA        >  SRR4302543.5268696/1‑94 (MQ=60)

                                                                                       TTCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAG       >  SRR4302543.2483563/1‑94 (MQ=60)

                                                                                        TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      <  SRR4302543.1151090/94‑1 (MQ=60)

                                                                                        TCGAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGA      >  SRR4302543.6861177/1‑94 (MQ=60)

                                                                                          GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    <  SRR4302543.5958553/94‑1 (MQ=60)

                                                                                          GAGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAAC    <  SRR4302543.6674831/94‑1 (MQ=60)

                                                                                           AGCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACT   >  SRR4302543.7576577/1‑94 (MQ=60)

                                                                                            GCGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  <  SRR4302543.2625183/94‑1 (MQ=60)

GTCGATGAACTCACAGGCTGTGTCTTCGGCGCGATCCCCCCTTTCAGCTTCCATCCAAAACTCAAACTGGTTGCCGACCCTCTACTCTTCGAACGATTTGATGAAATCGCCTTCAATGCAGGCATGCTGGATAAATCCGTTATTTTGAAAACCGCGGATTATTTGCGCATTGCGCAACCAGAACTG  >  NC_000913/1871892‑1872077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`