Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,877,795 |
T→C |
S60G (AGT→GGT) |
yeaR ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,877,795 | 0 | T | C | 100.0%
| 347.5
/ NA
| 110 | S60G (AGT→GGT) | yeaR | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (52/58); total (52/58) |
Only 100 of 117 total aligned reads displayed.
CAGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGA > NC_000913/1877705‑1877883
|
cagtcaTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACcgt < 2:3955370/93‑1 (MQ=255)
cagtcaTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACcgt > 2:2205745/1‑93 (MQ=255)
cagtcaTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACcgt < 2:1270026/93‑1 (MQ=255)
agtcaTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACcgtg < 1:459820/93‑1 (MQ=255)
gtcaTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCgtgt > 1:940866/1‑93 (MQ=255)
aTGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtca > 1:367367/1‑93 (MQ=255)
tGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGCTAAGGATCACCTGATCAGGCTCTGCACCGTGTtcat > 1:2842380/1‑93 (MQ=255)
tGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcat > 1:2749479/1‑93 (MQ=255)
tGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcat > 2:4233358/1‑93 (MQ=255)
tGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcat > 2:2180839/1‑93 (MQ=255)
tGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcat > 2:129337/1‑93 (MQ=255)
gtcTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcatc < 1:3274723/91‑1 (MQ=255)
ggCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcatc < 1:2164199/93‑1 (MQ=255)
ggCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTtcatc < 2:3797522/93‑1 (MQ=255)
cTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAg > 1:4473390/1‑93 (MQ=255)
cTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAg < 1:3462485/93‑1 (MQ=255)
cTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAg > 1:3326461/1‑93 (MQ=255)
cTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAg < 1:1339233/93‑1 (MQ=255)
cTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAg < 2:4385405/93‑1 (MQ=255)
ttCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGc > 1:3835765/1‑93 (MQ=255)
tCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCg > 2:2689952/1‑93 (MQ=255)
cAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGt < 2:53930/93‑1 (MQ=255)
cAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGt > 1:3012442/1‑93 (MQ=255)
aaTGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTa < 2:855853/93‑1 (MQ=255)
aaTGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTa > 1:2901012/1‑93 (MQ=255)
aTGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAg < 1:481108/93‑1 (MQ=255)
tgttgtGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGc > 2:2765901/1‑93 (MQ=255)
tgttgtGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGc > 1:1337374/1‑93 (MQ=255)
tgtgCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCga < 1:1706661/93‑1 (MQ=255)
gtgCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCgag > 1:373332/1‑93 (MQ=255)
gCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGat < 1:28952/93‑1 (MQ=255)
ccACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGata < 2:2081676/93‑1 (MQ=255)
ccACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGata < 2:3522901/93‑1 (MQ=255)
ccACTTGTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGata < 2:4379252/93‑1 (MQ=255)
cACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGatat < 1:2672117/93‑1 (MQ=255)
aCTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATAtt < 2:3867157/93‑1 (MQ=255)
cTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATAttt < 1:521819/93‑1 (MQ=255)
ttCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGAc < 1:2453400/93‑1 (MQ=255)
ttCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGAc < 1:45161/93‑1 (MQ=255)
ggAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGcc > 2:4429380/1‑93 (MQ=255)
aGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGcccc > 1:3384726/1‑93 (MQ=255)
gggAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCa > 2:2364597/1‑93 (MQ=255)
ggAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCAt < 1:1118607/93‑1 (MQ=255)
ggAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCAt < 1:2331537/93‑1 (MQ=255)
cgccGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCAt < 1:4088961/91‑1 (MQ=255)
gccGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATa < 2:789079/92‑1 (MQ=255)
ccGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGCGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATaa < 1:3304544/93‑1 (MQ=255)
cGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAAc < 2:1788804/93‑1 (MQ=255)
cGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAAc < 1:3761039/93‑1 (MQ=255)
cGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAAc < 1:1701580/93‑1 (MQ=255)
gCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACg > 1:571732/1‑93 (MQ=255)
cAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACgg < 2:1648900/93‑1 (MQ=255)
cAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACAGCCCCATGCATAACgg > 1:746222/1‑93 (MQ=255)
aaaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGa > 2:4618072/1‑93 (MQ=255)
aaaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGa < 1:2363722/93‑1 (MQ=255)
aaaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCACCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGa < 2:2346854/93‑1 (MQ=255)
aaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGaa > 1:3760974/1‑93 (MQ=255)
aaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGaa > 2:1901385/1‑93 (MQ=255)
aaCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGaa < 1:4049570/93‑1 (MQ=255)
aCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGaaa < 1:1527069/93‑1 (MQ=255)
aCTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGaaa < 1:2240364/93‑1 (MQ=255)
tGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAgg < 1:1084654/93‑1 (MQ=255)
tGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAgg < 1:2223307/93‑1 (MQ=255)
tGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAgg < 2:1672849/93‑1 (MQ=255)
cccGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGt > 2:730759/1‑93 (MQ=255)
cccGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGt < 1:2843099/93‑1 (MQ=255)
gCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATGTTTGACGGCCCCATGCATAACGGAAAGGCGTggt > 1:3483029/1‑92 (MQ=255)
gCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTggg > 1:435245/1‑93 (MQ=255)
cTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGt < 2:1557765/93‑1 (MQ=255)
cTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGt < 1:4357994/93‑1 (MQ=255)
ttCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTa < 1:2115988/93‑1 (MQ=255)
ttCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTa > 1:38499/1‑93 (MQ=255)
aTAAGGATCCCCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAAcc < 2:3784284/93‑1 (MQ=255)
tAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAAccc > 1:2940336/1‑93 (MQ=255)
tAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAAccc > 2:2429097/1‑93 (MQ=255)
ggATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCg > 1:330481/1‑93 (MQ=255)
ggATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCg < 1:470545/93‑1 (MQ=255)
gATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCgg > 1:4202813/1‑93 (MQ=255)
aTCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCggg > 2:3160958/1‑93 (MQ=255)
aCCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGgcgc > 2:2195532/1‑93 (MQ=255)
aCCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGgcgc > 1:696942/1‑93 (MQ=255)
ccTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGcgcg > 1:3113695/1‑93 (MQ=255)
ccTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGcgcg > 1:2611587/1‑93 (MQ=255)
ccTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGcgcg > 1:889475/1‑93 (MQ=255)
cTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGt > 1:2305120/1‑93 (MQ=255)
aTCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTcc > 2:1583478/1‑93 (MQ=255)
aTCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGCTAAACCCCCGGGCGCGTTcc > 2:2851440/1‑93 (MQ=255)
tCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCt < 1:202590/93‑1 (MQ=255)
cAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCtt < 2:1274161/93‑1 (MQ=255)
ggCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTa > 1:4201064/1‑93 (MQ=255)
ggCGCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTa < 1:2583263/93‑1 (MQ=255)
gCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAt > 1:1361405/1‑93 (MQ=255)
ctctGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATc < 2:4438085/93‑1 (MQ=255)
ctctGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGACGCGTTCCTTTATc < 2:530310/93‑1 (MQ=255)
cctcgCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATc < 1:599071/89‑1 (MQ=255)
ctGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCaa < 1:2109277/93‑1 (MQ=255)
ctGCACCGTGTTCATCAGCGTAGCCGAGATATTGGTCCGGCCCATGCATAACGGAAAGGCGTGGGTAACCCCCCGGGCGCGTTCCTTTATCaa < 1:582139/93‑1 (MQ=255)
gCACCGTGTTCTTCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGa < 2:1383519/93‑1 (MQ=255)
gCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGa < 2:2901012/93‑1 (MQ=255)
gCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGa < 2:2640435/93‑1 (MQ=255)
|
CAGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGA > NC_000913/1877705‑1877883
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGTCAGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACG > NC_000913/1877702‑1877888
|
CGTCAGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACC > SRR4302535.2440429/1‑94 (MQ=60)
AGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGT > SRR4302535.947526/1‑94 (MQ=60)
AGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGT < SRR4302535.463033/94‑1 (MQ=60)
GTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTT < SRR4302535.4073219/94‑1 (MQ=60)
GTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTT > SRR4302535.1662298/1‑94 (MQ=60)
CATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCA > SRR4302535.369903/1‑94 (MQ=60)
ATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGCTAAGGATCACCTGATCAGGCTCTGCACCGTGTTCAT > SRR4302535.2862537/1‑94 (MQ=60)
ATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCAT > SRR4302535.2769080/1‑94 (MQ=60)
GTCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCA < SRR4302535.3297468/94‑1 (MQ=60)
GGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCA < SRR4302535.2179722/94‑1 (MQ=60)
GCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAG > SRR4302535.4504087/1‑94 (MQ=60)
GCTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAG > SRR4302535.3349608/1‑94 (MQ=60)
CTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGC < SRR4302535.1348788/94‑1 (MQ=60)
CTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGC > SRR4302535.3862215/1‑94 (MQ=60)
CTTCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGC < SRR4302535.3486554/94‑1 (MQ=60)
TCAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGT > SRR4302535.3033549/1‑94 (MQ=60)
CAATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTA > SRR4302535.2921517/1‑94 (MQ=60)
ATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGC > SRR4302535.1346916/1‑94 (MQ=60)
ATGTTGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGC < SRR4302535.484481/94‑1 (MQ=60)
TGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAG < SRR4302535.1718997/94‑1 (MQ=60)
TGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAG < SRR4302535.2870087/94‑1 (MQ=60)
TGTGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAG > SRR4302535.375916/1‑94 (MQ=60)
TGCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGAT < SRR4302535.3316215/94‑1 (MQ=60)
GCCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATA < SRR4302535.29178/94‑1 (MQ=60)
CCACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATAT < SRR4302535.860334/94‑1 (MQ=60)
CACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATT < SRR4302535.2691233/94‑1 (MQ=60)
ACTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTT < SRR4302535.3688502/94‑1 (MQ=60)
CTTTTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTG < SRR4302535.525470/94‑1 (MQ=60)
TTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACC < SRR4302535.2471085/94‑1 (MQ=60)
TTCTGGAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACC < SRR4302535.45503/94‑1 (MQ=60)
GAGGGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCC > SRR4302535.3408277/1‑94 (MQ=60)
GGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATG < SRR4302535.1126587/94‑1 (MQ=60)
GGAACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATG < SRR4302535.2348215/94‑1 (MQ=60)
ACGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCAACGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCAT < SRR4302535.2526122/94‑1 (MQ=60)
CGCCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATA < SRR4302535.4116939/94‑1 (MQ=60)
CCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGCGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAAC < SRR4302535.3327533/94‑1 (MQ=60)
CGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACG > SRR4302535.575746/1‑94 (MQ=60)
CGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACG < SRR4302535.1713878/94‑1 (MQ=60)
CGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACG < SRR4302535.3787029/94‑1 (MQ=60)
GCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACAGCCCCATGCATAACGG > SRR4302535.751469/1‑94 (MQ=60)
AAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAA > SRR4302535.3786964/1‑94 (MQ=60)
AAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAA < SRR4302535.2380696/94‑1 (MQ=60)
AACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAA < SRR4302535.4077294/94‑1 (MQ=60)
ACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAG < SRR4302535.2256300/94‑1 (MQ=60)
ACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAG < SRR4302535.1538071/94‑1 (MQ=60)
TGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGC < SRR4302535.1092365/94‑1 (MQ=60)
TGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGC < SRR4302535.2239133/94‑1 (MQ=60)
CCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTG < SRR4302535.2863259/94‑1 (MQ=60)
CGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATGTTTGACGGCCCCATGCATAACGGAAAGGCGTGGT > SRR4302535.3507214/1‑94 (MQ=60)
CGCTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGG > SRR4302535.438277/1‑94 (MQ=60)
CTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTA < SRR4302535.4387829/94‑1 (MQ=60)
CTTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTA > SRR4302535.38795/1‑94 (MQ=60)
TTCGATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAA < SRR4302535.2131258/94‑1 (MQ=60)
ATAAGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCC > SRR4302535.2961011/1‑94 (MQ=60)
AGGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCG > SRR4302535.332770/1‑94 (MQ=60)
GGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGG > SRR4302535.4231570/1‑94 (MQ=60)
GGATCACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGG < SRR4302535.473837/94‑1 (MQ=60)
CACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGC > SRR4302535.701829/1‑94 (MQ=60)
ACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCG > SRR4302535.3135369/1‑94 (MQ=60)
ACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCG > SRR4302535.895777/1‑94 (MQ=60)
ACCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCG > SRR4302535.2630322/1‑94 (MQ=60)
CCTGATCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGT > SRR4302535.2321609/1‑94 (MQ=60)
TCAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTT < SRR4302535.203971/94‑1 (MQ=60)
CAGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGGTCCTTT > SRR4302535.496458/1‑94 (MQ=60)
AGGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTA > SRR4302535.4229812/1‑94 (MQ=60)
GGCTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAT > SRR4302535.1371143/1‑94 (MQ=60)
GGCGCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTAT < SRR4302535.2601823/94‑1 (MQ=60)
CTCTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCA < SRR4302535.2201933/94‑1 (MQ=60)
CTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAG > SRR4302535.44542/1‑94 (MQ=60)
CTGCACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAG < SRR4302535.2124488/94‑1 (MQ=60)
CTGCACCGTGTTCATCAGCGTAGCCGAGATATTGGTCCGGCCCATGCATAACGGAAAGGCGTGGGTAACCCCCCGGGCGCGTTCCTTTATCAAG < SRR4302535.586224/94‑1 (MQ=60)
CACCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCataagcgctaacttaagggttgaa < SRR4302535.3621901/94‑25 (MQ=60)
CCGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGAC < SRR4302535.1345642/94‑1 (MQ=60)
CGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACG < SRR4302535.1715877/94‑1 (MQ=60)
CGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACG < SRR4302535.103371/94‑1 (MQ=60)
CGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACG > SRR4302535.3840334/1‑94 (MQ=60)
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CGTCAGTCATGGCTTCAATGTTGTGCCACTTTTCTGGAGGGAACACCGCAAACTGCCCCGCTTCGATAAGGATCACCTGATCAGGCTCTGCACTGTGTTCATCAGCGTAGCCGAGATATTTGACCGCCCCATGCATAACGGAAAGGCGTGGGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACG > NC_000913/1877702‑1877888
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
