Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,928,564 |
T→C |
T70A (ACC→GCC) |
yebG ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,928,564 | 0 | T | C | 100.0%
| 371.9
/ NA
| 120 | T70A (ACC→GCC) | yebG | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (65/55); total (65/55) |
Only 100 of 124 total aligned reads displayed.
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > NC_000913/1928474‑1928650
|
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 1:3378740/1‑93 (MQ=255)
aGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGgcgc > 2:3540505/1‑93 (MQ=255)
gTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCt > 1:4366316/1‑93 (MQ=255)
gtccTTCAGGCCGTGTTTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAGTTTGCCGGTTTTCAGAATGGCGCTc < 2:3185825/90‑1 (MQ=255)
cTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGc > 1:3142788/1‑93 (MQ=255)
ttCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGca > 2:1096485/1‑93 (MQ=255)
tCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcac > 2:2724192/1‑93 (MQ=255)
cAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGcaca < 1:1727631/93‑1 (MQ=255)
aGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACAt > 2:2477837/1‑93 (MQ=255)
ggCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATc < 1:3899945/93‑1 (MQ=255)
gCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCt > 2:604491/1‑93 (MQ=255)
gCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCt > 2:4234306/1‑93 (MQ=255)
ccGCGTGGTAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtt < 2:48207/93‑1 (MQ=255)
gcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtttt < 1:4274837/93‑1 (MQ=255)
gcgTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCtttt < 2:3885631/93‑1 (MQ=255)
cttgtgAGGCTTCTTCCTCTTCGGATTCAGCCCCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCttttt < 2:2915533/91‑1 (MQ=255)
gtgtGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTg < 2:2546631/93‑1 (MQ=255)
tgtgAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGt < 2:2689507/93‑1 (MQ=255)
gtgAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGtt > 1:4523400/1‑93 (MQ=255)
tgAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTc > 2:4274804/1‑93 (MQ=255)
tgAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTc > 1:841652/1‑93 (MQ=255)
gAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCt > 1:2802817/1‑93 (MQ=255)
gAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTATTCt > 1:1357158/1‑93 (MQ=255)
cATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgcca < 1:1348679/93‑1 (MQ=255)
cATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgcca < 2:586807/93‑1 (MQ=255)
cATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgcca > 2:3920669/1‑93 (MQ=255)
aTCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccag > 1:744796/1‑93 (MQ=255)
aTCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccag < 2:1709033/93‑1 (MQ=255)
tCTTCCTCTTCGGATTCAGCACCGACGACCTGCGGGGACGGTAATTTGCCGGCTTTCAGAATGGCGCTCAGCACATCTTTGTGTTCTgccagc > 1:2379049/1‑93 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca > 1:4482162/1‑93 (MQ=255)
ttCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTgccagcca > 2:2812381/1‑93 (MQ=255)
tCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCAt < 2:1286437/93‑1 (MQ=255)
ccTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATa > 2:2339277/1‑93 (MQ=255)
ccTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATa < 2:3961940/93‑1 (MQ=255)
ccTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATa < 2:4034576/93‑1 (MQ=255)
ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAg < 1:3340205/93‑1 (MQ=255)
ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAg < 2:243624/93‑1 (MQ=255)
ctctTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAg > 1:1913965/1‑93 (MQ=255)
ttCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGa > 2:3612122/1‑93 (MQ=255)
ttCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGa > 1:4168016/1‑93 (MQ=255)
cGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGaaa < 1:3400059/93‑1 (MQ=255)
ggATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAg > 1:1250317/1‑93 (MQ=255)
gaatCAGCACCGACGACCTGTGGTGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAgg < 1:3837864/90‑1 (MQ=255)
gATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAgg > 1:3266364/1‑93 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc < 1:1689744/93‑1 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc > 1:4104271/1‑93 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc > 1:2724868/1‑93 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc < 2:984090/93‑1 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc > 2:351464/1‑93 (MQ=255)
ttCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGc < 2:3768122/93‑1 (MQ=255)
tCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCt < 1:3690844/93‑1 (MQ=255)
gCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCa < 2:729250/93‑1 (MQ=255)
cACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAc > 1:2655506/1‑93 (MQ=255)
aCCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGATTCACg > 2:4432783/1‑93 (MQ=255)
ccGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGt < 1:719939/93‑1 (MQ=255)
ccGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGt < 1:3648154/93‑1 (MQ=255)
gcgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGc < 2:3297930/92‑1 (MQ=255)
acgacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGc > 1:3752605/1‑93 (MQ=255)
gacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTc > 2:4179566/1‑93 (MQ=255)
gacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTc > 2:3833746/1‑93 (MQ=255)
cacCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTc < 1:581979/92‑1 (MQ=255)
cTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTc < 2:1770962/93‑1 (MQ=255)
gtgGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCtt > 1:1940289/1‑93 (MQ=255)
tgGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTc > 1:4222200/1‑93 (MQ=255)
ggggACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCCGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTcc < 2:1464542/93‑1 (MQ=255)
gggACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCa > 1:2069331/1‑93 (MQ=255)
gggACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCa < 1:3369697/93‑1 (MQ=255)
gggACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCa < 1:3387044/93‑1 (MQ=255)
gACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAtt < 2:772138/93‑1 (MQ=255)
gACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAtt < 2:1347928/93‑1 (MQ=255)
gACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTACAtt > 1:844730/1‑93 (MQ=255)
cGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTg > 2:3478523/1‑93 (MQ=255)
cGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTg > 1:245630/1‑93 (MQ=255)
ggTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGc < 1:2736633/93‑1 (MQ=255)
gTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCa > 2:818469/1‑93 (MQ=255)
tttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTgg > 1:1097230/1‑93 (MQ=255)
tttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTgg > 2:974911/1‑93 (MQ=255)
tttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTgg < 1:3495620/93‑1 (MQ=255)
ttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGga < 2:3445537/93‑1 (MQ=255)
ttGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGga < 2:1365440/93‑1 (MQ=255)
gCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGgaga < 1:4041786/93‑1 (MQ=255)
gCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGgaga < 1:228536/93‑1 (MQ=255)
ccGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGaa < 1:2920416/93‑1 (MQ=255)
ccGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGaa < 2:1966598/93‑1 (MQ=255)
ccGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGaa > 1:2950874/1‑93 (MQ=255)
cGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAt > 2:382878/1‑93 (MQ=255)
ggTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAtt > 1:4596793/1‑93 (MQ=255)
gTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAttt > 1:1715707/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGGCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg > 1:974981/1‑93 (MQ=255)
ttttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTg > 1:3061986/1‑93 (MQ=255)
tttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGt > 2:2411526/1‑93 (MQ=255)
tttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGt < 1:1771556/93‑1 (MQ=255)
ttCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTc < 1:1070408/93‑1 (MQ=255)
tCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCa > 1:2243573/1‑93 (MQ=255)
tCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCa < 2:3301984/93‑1 (MQ=255)
cAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAg > 1:3231168/1‑93 (MQ=255)
aGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGc > 2:3713019/1‑93 (MQ=255)
aGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGc > 1:3268162/1‑93 (MQ=255)
gAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGcc > 1:1704204/1‑93 (MQ=255)
gAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGcc < 1:3914898/93‑1 (MQ=255)
|
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > NC_000913/1928474‑1928650
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGT > NC_000913/1928471‑1928656
|
GCAAGTTGCTTCAGGCAGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTTAGAATGGG > SRR4302535.1970823/1‑94 (MQ=60)
CGAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCG > SRR4302535.3127696/1‑94 (MQ=60)
AAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGC > SRR4302535.3402231/1‑94 (MQ=60)
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCT > SRR4302535.4396192/1‑94 (MQ=60)
AGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCT < SRR4302535.3394387/94‑1 (MQ=60)
GCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGC > SRR4302535.3164653/1‑94 (MQ=60)
CAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACAT < SRR4302535.1740120/94‑1 (MQ=60)
GGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCT < SRR4302535.3926660/94‑1 (MQ=60)
GCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTT < SRR4302535.627624/94‑1 (MQ=60)
GCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTT < SRR4302535.4304097/94‑1 (MQ=60)
TGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTT > SRR4302535.4554392/1‑94 (MQ=60)
GTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTC > SRR4302535.3904764/1‑94 (MQ=60)
GTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTC > SRR4302535.847557/1‑94 (MQ=60)
TGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCT > SRR4302535.2822751/1‑94 (MQ=60)
TGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTATTCT > SRR4302535.1366867/1‑94 (MQ=60)
CATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAG > SRR4302535.750026/1‑94 (MQ=60)
CATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAG < SRR4302535.4430545/94‑1 (MQ=60)
CATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAG < SRR4302535.1358311/94‑1 (MQ=60)
ATCTTCCTCTTCGGATTCAGCACCGACGACCTGCGGGGACGGTAATTTGCCGGCTTTCAGAATGGCGCTCAGCACATCTTTGTGTTCTGCCAGC > SRR4302535.2396135/1‑94 (MQ=60)
CTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCA > SRR4302535.4512924/1‑94 (MQ=60)
CCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAG > SRR4302535.1927759/1‑94 (MQ=60)
CTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGC < SRR4302535.3363480/94‑1 (MQ=60)
CTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGA > SRR4302535.4196555/1‑94 (MQ=60)
CGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAG > SRR4302535.1259243/1‑94 (MQ=60)
CGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAG < SRR4302535.3423722/94‑1 (MQ=60)
GGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGG > SRR4302535.3289056/1‑94 (MQ=60)
GAATCAGCACCGACGACCTGTGGTGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGG < SRR4302535.3864321/94‑1 (MQ=60)
ATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGC > SRR4302535.2744329/1‑94 (MQ=60)
ATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGC > SRR4302535.4132369/1‑94 (MQ=60)
TTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCT < SRR4302535.1701974/94‑1 (MQ=60)
TCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTT < SRR4302535.3716389/94‑1 (MQ=60)
GCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCAC > SRR4302535.2674534/1‑94 (MQ=60)
CCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTT < SRR4302535.3673414/94‑1 (MQ=60)
CCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTT < SRR4302535.724997/94‑1 (MQ=60)
GACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGC > SRR4302535.3778574/1‑94 (MQ=60)
ACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCT < SRR4302535.2125745/94‑1 (MQ=60)
CGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTC > SRR4302535.1395409/1‑94 (MQ=60)
GACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCG < SRR4302535.3549906/94‑1 (MQ=60)
CACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCG < SRR4302535.586064/94‑1 (MQ=60)
CCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTC > SRR4302535.178302/1‑94 (MQ=60)
TGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTT > SRR4302535.1954267/1‑94 (MQ=60)
GTGGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTC > SRR4302535.4251090/1‑94 (MQ=60)
GGGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCA > SRR4302535.2084248/1‑94 (MQ=60)
GGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAT < SRR4302535.3393141/94‑1 (MQ=60)
GGGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCAT < SRR4302535.3410613/94‑1 (MQ=60)
GGACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTACATT > SRR4302535.850660/1‑94 (MQ=60)
ACGGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTG > SRR4302535.247311/1‑94 (MQ=60)
GGTAATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCA < SRR4302535.2756155/94‑1 (MQ=60)
TAATTTGCCGGTTTTCAGAATGGCGATCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACT < SRR4302535.2564910/94‑1 (MQ=60)
ATTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGG > SRR4302535.1105042/1‑94 (MQ=60)
TTTGCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGA < SRR4302535.3519908/94‑1 (MQ=60)
GCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA > SRR4302535.2971603/1‑94 (MQ=60)
GCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA < SRR4302535.4069456/94‑1 (MQ=60)
GCCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAA < SRR4302535.230109/94‑1 (MQ=60)
CCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGggatt > SRR4302535.2849697/1‑89 (MQ=60)
CCGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAAT < SRR4302535.2941018/94‑1 (MQ=60)
CGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATT > SRR4302535.4628066/1‑94 (MQ=60)
CGGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATT > SRR4302535.4179473/1‑94 (MQ=60)
GGTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTT > SRR4302535.1728119/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGGCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG > SRR4302535.981903/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG > SRR4302535.3083396/1‑94 (MQ=60)
GTTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTG > SRR4302535.989195/1‑94 (MQ=60)
TTTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGT < SRR4302535.3181883/94‑1 (MQ=60)
TTTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTC < SRR4302535.1784393/94‑1 (MQ=60)
TTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCA < SRR4302535.1078018/94‑1 (MQ=60)
TTCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCA > SRR4302535.2259528/1‑94 (MQ=60)
TCAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAG > SRR4302535.3253570/1‑94 (MQ=60)
CAGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGC > SRR4302535.3290866/1‑94 (MQ=60)
AGAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCC > SRR4302535.1716524/1‑94 (MQ=60)
GAATGGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCA < SRR4302535.3941687/94‑1 (MQ=60)
GGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTG < SRR4302535.2884128/94‑1 (MQ=60)
GGCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTG < SRR4302535.1104289/94‑1 (MQ=60)
GCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGT > SRR4302535.2569876/1‑94 (MQ=60)
GCGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGT > SRR4302535.1651062/1‑94 (MQ=60)
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GCAAGTTGCTTCAGGCCGCGTGTGAGGCATCTTCCTCTTCGGATTCAGCACCGACGACCTGTGGGGACGGTAATTTGCCGGTTTTCAGAATGGTGCTCAGCACATCTTTTTGTTCTGCCAGCCATAGCGAAAGGGCTTCACGTTGCTCGTCTTCCATTTGCACTGGAGAATTTGTCAGCCAGGTGT > NC_000913/1928471‑1928656
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
