Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,945,456 |
A→G |
D240D (GAT→GAC) |
yebC ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,945,456 | 0 | A | G | 100.0%
| 349.1
/ NA
| 110 | D240D (GAT→GAC) | yebC | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (48/62); total (48/62) |
Only 100 of 115 total aligned reads displayed.
CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTC > NC_000913/1945366‑1945545
|
cgcgAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtcgtc < 1:1089942/93‑1 (MQ=255)
cgcgAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtcgtc > 2:3394819/1‑93 (MQ=255)
gcgAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtcgtca < 2:212480/93‑1 (MQ=255)
aCCCGGATCAATGCCGAGAATAATAGCCATCACGCTTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAgaga < 1:348891/93‑1 (MQ=255)
aCCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAgaga > 1:1455580/1‑93 (MQ=255)
cccGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAt < 2:201804/93‑1 (MQ=255)
ggATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTc > 2:1085159/1‑93 (MQ=255)
gATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCa < 1:2461832/93‑1 (MQ=255)
gATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCa > 2:3269240/1‑93 (MQ=255)
aTCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTTGTCAGAGATTTCAc > 2:2772901/1‑93 (MQ=255)
aTCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAc > 1:3618345/1‑93 (MQ=255)
tCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAcc > 2:4376398/1‑93 (MQ=255)
tCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAcc > 2:3750879/1‑93 (MQ=255)
aTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGtt > 1:3398087/1‑93 (MQ=255)
tGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTa > 1:3458496/1‑93 (MQ=255)
gCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTAt < 1:2741467/93‑1 (MQ=255)
gCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTAt < 1:4353308/93‑1 (MQ=255)
gCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTAt < 2:3162032/93‑1 (MQ=255)
ccGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATg > 1:2385666/1‑93 (MQ=255)
agaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTa > 1:541902/1‑93 (MQ=255)
gaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaa > 1:3738976/1‑93 (MQ=255)
aataatAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaaa < 2:1355060/93‑1 (MQ=255)
aataatAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaaa < 1:3619361/93‑1 (MQ=255)
aataatAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaaa < 2:663274/93‑1 (MQ=255)
aataatAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaaa < 1:2352779/93‑1 (MQ=255)
taataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACt < 2:3749577/93‑1 (MQ=255)
taataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACt < 2:1066412/93‑1 (MQ=255)
aataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACtt < 2:4113853/93‑1 (MQ=255)
ataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTc > 1:2713386/1‑93 (MQ=255)
ataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTc < 1:3246650/93‑1 (MQ=255)
ataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTc > 2:1555186/1‑93 (MQ=255)
ataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTc < 1:1527798/93‑1 (MQ=255)
aGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCt > 2:2240014/1‑93 (MQ=255)
aGCCATCACGCGTCTCCGTTTTCCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCt < 2:3802269/93‑1 (MQ=255)
gCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTTGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAATTcttt > 1:3532121/1‑90 (MQ=255)
gCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTg > 2:941446/1‑93 (MQ=255)
cATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCa < 2:4167615/93‑1 (MQ=255)
cATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCa > 2:934713/1‑93 (MQ=255)
cATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCa > 2:1400333/1‑93 (MQ=255)
cATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCa > 1:874799/1‑93 (MQ=255)
aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAc < 2:3832426/93‑1 (MQ=255)
aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAc > 2:3451180/1‑93 (MQ=255)
tCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcg > 2:1070095/1‑93 (MQ=255)
aCGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtc > 1:2234397/1‑93 (MQ=255)
gcgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtcgt < 1:330419/93‑1 (MQ=255)
cgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACgtcgtc < 1:108166/93‑1 (MQ=255)
cgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACgtcgtc < 2:4441407/93‑1 (MQ=255)
cgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTCCCTGCACgtcgtc < 2:318399/93‑1 (MQ=255)
gTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGtcgtcg > 2:2759268/1‑93 (MQ=255)
gTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGtcgtcg > 1:2136251/1‑93 (MQ=255)
tctcCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGAACGTCGTCGc > 1:1625771/1‑93 (MQ=255)
ctcCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGTCCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCa < 1:2686215/93‑1 (MQ=255)
tcCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCaa > 1:3969218/1‑93 (MQ=255)
cGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATc < 2:368207/93‑1 (MQ=255)
gTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCt < 1:3181556/93‑1 (MQ=255)
gTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTAAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCt < 2:1239236/93‑1 (MQ=255)
ttttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCtt > 1:3845998/1‑93 (MQ=255)
tttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTc < 2:193013/93‑1 (MQ=255)
ttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTcc > 2:3359240/1‑93 (MQ=255)
ttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTcc < 1:940429/93‑1 (MQ=255)
tGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCa > 2:3748754/1‑93 (MQ=255)
tGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCa < 1:1102293/93‑1 (MQ=255)
gCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAg < 1:3155875/93‑1 (MQ=255)
cTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGc < 2:2506629/93‑1 (MQ=255)
tGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTCAACTTCCTGCACGTCGTCGCAATCTTCCAGCa > 2:2581783/1‑93 (MQ=255)
tGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCa < 1:4374516/93‑1 (MQ=255)
tttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCata < 2:4312535/93‑1 (MQ=255)
tttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCata < 1:2775426/93‑1 (MQ=255)
tttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCata < 1:2691456/93‑1 (MQ=255)
gCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGa < 1:4347309/93‑1 (MQ=255)
cAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGCTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGAt < 1:1342150/93‑1 (MQ=255)
aGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATc > 1:1794476/1‑93 (MQ=255)
aGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATc < 2:1967158/93‑1 (MQ=255)
aGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATc < 2:1956868/93‑1 (MQ=255)
ggCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCa < 1:3984396/93‑1 (MQ=255)
ggCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCa < 1:3733763/93‑1 (MQ=255)
ggCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCa > 2:2233072/1‑93 (MQ=255)
gCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAg > 1:3032122/1‑93 (MQ=255)
ccTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGa > 1:2747514/1‑93 (MQ=255)
ccTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGa < 1:3124977/93‑1 (MQ=255)
atcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCa < 1:758204/93‑1 (MQ=255)
tcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAt < 2:1187963/93‑1 (MQ=255)
agagagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCa < 1:415018/93‑1 (MQ=255)
agagagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCa < 1:396179/93‑1 (MQ=255)
gagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGtt < 2:2413512/93‑1 (MQ=255)
gagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGtt < 2:3754327/93‑1 (MQ=255)
gagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGtt < 2:211601/93‑1 (MQ=255)
agTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGttt < 2:1281396/93‑1 (MQ=255)
tCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCg > 2:933914/1‑93 (MQ=255)
gCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGt < 2:1417105/93‑1 (MQ=255)
gCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGt > 2:4601657/1‑93 (MQ=255)
gCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGt < 1:3392167/93‑1 (MQ=255)
cTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTg < 1:3164436/93‑1 (MQ=255)
tGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCCGTTTCGGTGc > 2:4276266/1‑93 (MQ=255)
tGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGc > 1:4371650/1‑93 (MQ=255)
tGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGc < 1:4652952/93‑1 (MQ=255)
gACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCCGt > 2:782247/1‑93 (MQ=255)
aCCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGtt > 1:1841991/1‑93 (MQ=255)
ccTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGttt < 2:674338/93‑1 (MQ=255)
cTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTc > 2:1099273/1‑93 (MQ=255)
|
CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTC > NC_000913/1945366‑1945545
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA > NC_000913/1945363‑1945549
|
ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCG < SRR4302535.2135611/94‑1 (MQ=60)
CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCA < SRR4302535.1097706/94‑1 (MQ=60)
GAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAG < SRR4302535.3717897/94‑1 (MQ=60)
AACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGA > SRR4302535.1465999/1‑94 (MQ=60)
ACCCGGATCAATGCCGAGAATAATAGCCATCACGCTTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAT < SRR4302535.351293/94‑1 (MQ=60)
GATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAC < SRR4302535.2479579/94‑1 (MQ=60)
GATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAC > SRR4302535.3643430/1‑94 (MQ=60)
AATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTT > SRR4302535.3421731/1‑94 (MQ=60)
ATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTA > SRR4302535.3482542/1‑94 (MQ=60)
GCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATG < SRR4302535.4383102/94‑1 (MQ=60)
GCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATG < SRR4302535.2761006/94‑1 (MQ=60)
GCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATG > SRR4302535.2402809/1‑94 (MQ=60)
GAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTA > SRR4302535.545688/1‑94 (MQ=60)
AGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAA > SRR4302535.3764853/1‑94 (MQ=60)
AGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAA > SRR4302535.2958859/1‑94 (MQ=60)
AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC < SRR4302535.3644453/94‑1 (MQ=60)
AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC < SRR4302535.2369647/94‑1 (MQ=60)
AATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTC > SRR4302535.2732772/1‑94 (MQ=60)
ATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCC < SRR4302535.3269198/94‑1 (MQ=60)
ATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCC < SRR4302535.1538804/94‑1 (MQ=60)
AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTTGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAattcttt > SRR4302535.3556643/1‑87 (MQ=60)
CCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCA > SRR4302535.4120884/1‑94 (MQ=60)
CCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCA > SRR4302535.880999/1‑94 (MQ=60)
CACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTC > SRR4302535.2250292/1‑94 (MQ=60)
GCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTC < SRR4302535.332708/94‑1 (MQ=60)
CGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCG > SRR4302535.2151640/1‑94 (MQ=60)
CGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCG < SRR4302535.108932/94‑1 (MQ=60)
GTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGAACGTCGTCGC > SRR4302535.1637509/1‑94 (MQ=60)
CTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGTCCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAA < SRR4302535.2705420/94‑1 (MQ=60)
CTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAA > SRR4302535.3996327/1‑94 (MQ=60)
GTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTT < SRR4302535.3203545/94‑1 (MQ=60)
GTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTT > SRR4302535.3872478/1‑94 (MQ=60)
GTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTT > SRR4302535.2566766/1‑94 (MQ=60)
TTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCA < SRR4302535.947085/94‑1 (MQ=60)
TGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAG < SRR4302535.1110168/94‑1 (MQ=60)
GCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGC < SRR4302535.3177792/94‑1 (MQ=60)
TGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCAT < SRR4302535.4404446/94‑1 (MQ=60)
TTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATAT < SRR4302535.2795187/94‑1 (MQ=60)
TTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATAT < SRR4302535.2710693/94‑1 (MQ=60)
GCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGAT < SRR4302535.4377052/94‑1 (MQ=60)
CAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATC > SRR4302535.1807449/1‑94 (MQ=60)
CAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGCTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATC < SRR4302535.1351730/94‑1 (MQ=60)
AGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCA < SRR4302535.1744072/94‑1 (MQ=60)
GGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAG < SRR4302535.3759608/94‑1 (MQ=60)
GGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAG > SRR4302535.3053350/1‑94 (MQ=60)
GGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAG < SRR4302535.4011620/94‑1 (MQ=60)
GCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGA > SRR4302535.2767099/1‑94 (MQ=60)
CCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAC < SRR4302535.3146741/94‑1 (MQ=60)
ATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAT > SRR4302535.3358537/1‑94 (MQ=60)
ATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAT < SRR4302535.763547/94‑1 (MQ=60)
AGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAG < SRR4302535.417930/94‑1 (MQ=60)
AGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAG < SRR4302535.398954/94‑1 (MQ=60)
GAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTT < SRR4302535.642501/94‑1 (MQ=60)
GCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTG < SRR4302535.3415769/94‑1 (MQ=60)
CTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGC < SRR4302535.3186376/94‑1 (MQ=60)
CTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGC > SRR4302535.4401564/1‑94 (MQ=60)
TGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCG < SRR4302535.4684456/94‑1 (MQ=60)
GACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTT > SRR4302535.1855276/1‑94 (MQ=60)
TCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTG > SRR4302535.3993672/1‑94 (MQ=60)
TCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTG > SRR4302535.4466471/1‑94 (MQ=60)
GTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA > SRR4302535.433904/1‑94 (MQ=60)
GTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA > SRR4302535.3285907/1‑94 (MQ=60)
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ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA > NC_000913/1945363‑1945549
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
