Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1696	279.3	15874187	97.8%	15524954	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,945,456	A→G	D240D (GAT→GAC)	yebC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,945,456	0	A	G	100.0%	729.8 / NA	230	D240D (GAT→GAC)	yebC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/103); total (127/103)

Only 100 of 241 total aligned reads displayed.

CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTC  >  NC_000913/1945366‑1945545

cgcgAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCtcgtc                                                                                         <  2:4091024/93‑1 (MQ=255)

     aCCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAgaga                                                                                    <  1:6211370/93‑1 (MQ=255)

      cccGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAt                                                                                   <  1:6593641/93‑1 (MQ=255)

       ccGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTAAGAGAtt                                                                                  >  1:1483593/1‑93 (MQ=255)

        cGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAttt                                                                                 <  1:5617456/93‑1 (MQ=255)

         ggATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTc                                                                                >  1:4604370/1‑93 (MQ=255)

          gATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCa                                                                               <  1:6656491/93‑1 (MQ=255)

           aTCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAc                                                                              <  2:7233101/93‑1 (MQ=255)

            tCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAcc                                                                             >  1:84285/1‑93 (MQ=255)

             cAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCg                                                                            <  1:5902108/93‑1 (MQ=255)

              aaTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGt                                                                           >  2:3012576/1‑93 (MQ=255)

              aaTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGt                                                                           <  1:6196774/93‑1 (MQ=255)

              aaTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGt                                                                           <  1:6985359/93‑1 (MQ=255)

              aaTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGt                                                                           >  2:6350626/1‑93 (MQ=255)

               aTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGtt                                                                          >  2:3899370/1‑93 (MQ=255)

               aTGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGtt                                                                          >  2:5810948/1‑93 (MQ=255)

                tGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTa                                                                         <  2:1088792/93‑1 (MQ=255)

                tGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTa                                                                         >  2:3194541/1‑93 (MQ=255)

                 gCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTAt                                                                        <  1:2798910/93‑1 (MQ=255)

                    gagaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATgga                                                                     >  2:7557272/1‑92 (MQ=255)

                    gagaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGt                                                                     >  1:1718518/1‑93 (MQ=255)

                    gagaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGt                                                                     <  1:2912071/93‑1 (MQ=255)

                     agaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTa                                                                    <  2:3271090/93‑1 (MQ=255)

                      gaATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTaa                                                                   >  2:487612/1‑93 (MQ=255)

                        ataataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAc                                                                 <  1:3758229/93‑1 (MQ=255)

                        ataataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAc                                                                 >  1:5263474/1‑93 (MQ=255)

                        ataataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAc                                                                 <  1:2212861/93‑1 (MQ=255)

                         taataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACt                                                                >  1:4461810/1‑93 (MQ=255)

                           ataGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTc                                                              <  1:723880/93‑1 (MQ=255)

                            taGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTct                                                             >  1:1170027/1‑92 (MQ=255)

                            taGCCATCACGCGTCTCCGTTTTGCTGTTGAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTcc                                                             <  2:7090018/93‑1 (MQ=255)

                            aaGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTcc                                                             <  2:6880582/92‑1 (MQ=255)

                             aGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCt                                                            >  2:7187904/1‑93 (MQ=255)

                              gCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTg                                                           >  1:3154118/1‑93 (MQ=255)

                                 aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAc                                                        >  2:126059/1‑93 (MQ=255)

                                 aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAc                                                        >  2:2292803/1‑93 (MQ=255)

                                 aTCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAc                                                        <  2:6596412/93‑1 (MQ=255)

                                   cACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgt                                                      <  2:2630476/93‑1 (MQ=255)

                                    aCGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtc                                                     <  1:1282223/93‑1 (MQ=255)

                                    aCGCGACCCCGTTGTGCTTTTGAGCATGCCTCATCAGAGAGTCCCTGCGACCTCGTCAGAGATTTCTCCGTTATGGTCAACTTCCTGCAcctc                                                     <  2:3842599/93‑1 (MQ=255)

                                     cgcgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtcg                                                    >  1:299245/1‑93 (MQ=255)

                                     cgcgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtcg                                                    >  2:4776472/1‑93 (MQ=255)

                                      gcgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAcgtcgt                                                   <  1:7499973/93‑1 (MQ=255)

                                       cgTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACgtcgtc                                                  <  1:416828/93‑1 (MQ=255)

                                        gTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGtcgtcg                                                 >  1:68760/1‑93 (MQ=255)

                                        gTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGtcgtcg                                                 >  2:4832517/1‑93 (MQ=255)

                                         tctcCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGc                                                >  2:4190547/1‑93 (MQ=255)

                                           tcCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCaa                                              <  2:4320027/93‑1 (MQ=255)

                                            ccGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGtcgtcgacat                                             >  2:120509/1‑89 (MQ=255)

                                            ccGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAAt                                             >  2:5193975/1‑93 (MQ=255)

                                              gTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCActct                                           >  2:5300864/1‑93 (MQ=255)

                                               ttttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCtt                                          <  2:7363060/93‑1 (MQ=255)

                                                tttGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTc                                         >  2:1868762/1‑93 (MQ=255)

                                                  tGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCa                                       <  1:6116929/93‑1 (MQ=255)

                                                  tGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCa                                       <  1:6313976/93‑1 (MQ=255)

                                                  tGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCa                                       <  2:5488375/93‑1 (MQ=255)

                                                   gCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAg                                      >  1:5076195/1‑93 (MQ=255)

                                                   gCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAg                                      >  2:1905906/1‑93 (MQ=255)

                                                   gCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAg                                      >  1:3794808/1‑93 (MQ=255)

                                                     tGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCTCAATCTTCCAGCa                                    >  1:3516541/1‑93 (MQ=255)

                                                     tGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCa                                    <  2:6086608/93‑1 (MQ=255)

                                                     tGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCa                                    <  2:252621/93‑1 (MQ=255)

                                                      gTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCat                                   <  1:6912679/93‑1 (MQ=255)

                                                      gTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCat                                   >  2:6545141/1‑93 (MQ=255)

                                                       tttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCata                                  <  2:5252357/93‑1 (MQ=255)

                                                        ttAGCCGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCCCCGTTATGGTAAACTTCCTGCACGTCGTGGCAATCTTCCAGCatat                                 <  2:505756/93‑1 (MQ=255)

                                                        ttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGTAATATTCCAACatat                                 >  2:7699961/1‑93 (MQ=255)

                                                        ttAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCatat                                 <  2:1549386/93‑1 (MQ=255)

                                                         tAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATc                                <  2:4498629/93‑1 (MQ=255)

                                                          aGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGGCGTCGCAATCTTCCAGCATATCg                               >  2:4343674/1‑93 (MQ=255)

                                                           gCAGGCCTCATCAGAGAGTCGCTGCGGCCTCGTCAGAGATTTCACCGTTATGGTAACCTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGa                              <  1:1795732/93‑1 (MQ=255)

                                                           gCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGa                              <  2:6606770/93‑1 (MQ=255)

                                                           gCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGa                              >  2:388910/1‑93 (MQ=255)

                                                            cAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGAt                             >  1:181802/1‑93 (MQ=255)

                                                             aGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATc                            <  1:434008/93‑1 (MQ=255)

                                                               gCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAg                          >  1:4992171/1‑93 (MQ=255)

                                                                ccTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGa                         <  1:3889299/93‑1 (MQ=255)

                                                                 cTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAc                        <  2:4555325/93‑1 (MQ=255)

                                                                 cTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAc                        >  2:1838319/1‑93 (MQ=255)

                                                                  tcatcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACg                       >  2:1656755/1‑93 (MQ=255)

                                                                  tcatcaGAGAGTCGATGCGACCTCGTCAGAGATTTTACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACg                       >  2:4133010/1‑93 (MQ=255)

                                                                   catcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGc                      <  1:253548/93‑1 (MQ=255)

                                                                   catcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGc                      <  2:3637172/93‑1 (MQ=255)

                                                                   catcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGc                      >  1:7569616/1‑93 (MQ=255)

                                                                    atcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCa                     >  1:7294722/1‑93 (MQ=255)

                                                                     tcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAt                    >  2:5627046/1‑93 (MQ=255)

                                                                     tcaGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAt                    >  1:4321529/1‑93 (MQ=255)

                                                                      caGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATc                   <  2:31426/93‑1 (MQ=255)

                                                                        gagagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAg                 >  1:7747359/1‑93 (MQ=255)

                                                                        gagagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAg                 >  1:518941/1‑93 (MQ=255)

                                                                        gagagTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAg                 >  2:729212/1‑93 (MQ=255)

                                                                            gTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTc             >  2:5951806/1‑93 (MQ=255)

                                                                            gTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTc             <  1:1045271/93‑1 (MQ=255)

                                                                             tCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCg            >  1:7899854/1‑93 (MQ=255)

                                                                             tCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCg            >  1:984533/1‑93 (MQ=255)

                                                                                  gCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCg       <  1:4630786/93‑1 (MQ=255)

                                                                                    gACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGt     <  2:3296387/93‑1 (MQ=255)

                                                                                    gACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGt     >  1:2006297/1‑93 (MQ=255)

                                                                                     aCCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGtt    <  2:1126482/93‑1 (MQ=255)

                                                                                       cTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTc  <  1:2250553/93‑1 (MQ=255)

CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTC  >  NC_000913/1945366‑1945545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA  >  NC_000913/1945363‑1945549

ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCG                                                                                               <  SRR4302543.7063575/94‑1 (MQ=60)

 CGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGT                                                                                              >  SRR4302543.5895597/1‑94 (MQ=60)

 CGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGT                                                                                              <  SRR4302543.745734/94‑1 (MQ=60)

 CGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGT                                                                                              >  SRR4302543.6666533/1‑94 (MQ=60)

   CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCA                                                                                            >  SRR4302543.4362199/1‑94 (MQ=60)

   CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCA                                                                                            <  SRR4302543.7650044/94‑1 (MQ=60)

   CGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCA                                                                                            <  SRR4302543.6267121/94‑1 (MQ=60)

       AACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGA                                                                                        <  SRR4302543.2218165/94‑1 (MQ=60)

        ACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAT                                                                                       <  SRR4302543.1129607/94‑1 (MQ=60)

        ACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGAT                                                                                       <  SRR4302543.6270019/94‑1 (MQ=60)

         CCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATT                                                                                      <  SRR4302543.6655765/94‑1 (MQ=60)

         CCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATT                                                                                      <  SRR4302543.5048022/94‑1 (MQ=60)

         CCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTAAGAGATT                                                                                      >  SRR4302543.1496953/1‑94 (MQ=60)

           CGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTC                                                                                    <  SRR4302543.3251837/94‑1 (MQ=60)

           CGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTC                                                                                    >  SRR4302543.4646198/1‑94 (MQ=60)

           CGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTC                                                                                    <  SRR4302543.5668647/94‑1 (MQ=60)

           CGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTC                                                                                    >  SRR4302543.6220562/1‑94 (MQ=60)

            GGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCA                                                                                   <  SRR4302543.8004350/94‑1 (MQ=60)

            GGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCA                                                                                   <  SRR4302543.5193173/94‑1 (MQ=60)

            GGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCA                                                                                   >  SRR4302543.2243926/1‑94 (MQ=60)

             GATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCAC                                                                                  <  SRR4302543.6719340/94‑1 (MQ=60)

              ATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACC                                                                                 >  SRR4302543.85062/1‑94 (MQ=60)

               TCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCG                                                                                >  SRR4302543.388215/1‑94 (MQ=60)

                CAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGT                                                                               <  SRR4302543.5955957/94‑1 (MQ=60)

                 AATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTT                                                                              <  SRR4302543.6255305/94‑1 (MQ=60)

                 AATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTT                                                                              <  SRR4302543.7051102/94‑1 (MQ=60)

                    GCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATG                                                                           >  SRR4302543.4809292/1‑94 (MQ=60)

                    GCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATG                                                                           <  SRR4302543.2824497/94‑1 (MQ=60)

                      CGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGT                                                                         >  SRR4302543.1733865/1‑94 (MQ=60)

                       GAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTA                                                                        <  SRR4302543.2938537/94‑1 (MQ=60)

                       GAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTA                                                                        <  SRR4302543.7389439/94‑1 (MQ=60)

                       GAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTA                                                                        >  SRR4302543.6188174/1‑94 (MQ=60)

                        AGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAA                                                                       >  SRR4302543.4387803/1‑94 (MQ=60)

                          AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC                                                                     <  SRR4302543.4717176/94‑1 (MQ=60)

                          AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC                                                                     >  SRR4302543.7612676/1‑94 (MQ=60)

                          AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC                                                                     >  SRR4302543.5310959/1‑94 (MQ=60)

                          AATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAAC                                                                     >  SRR4302543.2456745/1‑94 (MQ=60)

                           ATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACT                                                                    <  SRR4302543.3791299/94‑1 (MQ=60)

                           ATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACT                                                                    >  SRR4302543.4502237/1‑94 (MQ=60)

                           ATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACT                                                                    <  SRR4302543.2232799/94‑1 (MQ=60)

                            TAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTT                                                                   >  SRR4302543.6323819/1‑94 (MQ=60)

                              ATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCT                                                                 >  SRR4302543.1180652/1‑94 (MQ=60)

                              ATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCC                                                                 <  SRR4302543.730402/94‑1 (MQ=60)

                              ATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCC                                                                 <  SRR4302543.933884/94‑1 (MQ=60)

                                AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTG                                                               >  SRR4302543.765211/1‑94 (MQ=60)

                                AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTG                                                               <  SRR4302543.2496985/94‑1 (MQ=60)

                                AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTG                                                               <  SRR4302543.3490216/94‑1 (MQ=60)

                                AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTG                                                               >  SRR4302543.3182498/1‑94 (MQ=60)

                                AGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTG                                                               >  SRR4302543.1803836/1‑94 (MQ=60)

                                   CATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAC                                                            <  SRR4302543.1727620/94‑1 (MQ=60)

                                   CATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAC                                                            >  SRR4302543.6689079/1‑94 (MQ=60)

                                   CATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCAC                                                            >  SRR4302543.294051/1‑94 (MQ=60)

                                    ATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACG                                                           >  SRR4302543.6548567/1‑94 (MQ=60)

                                      CACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTACTGCACGTC                                                         >  SRR4302543.7124308/1‑94 (MQ=60)

                                       ACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCG                                                        <  SRR4302543.1293659/94‑1 (MQ=60)

                                       ACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCG                                                        >  SRR4302543.301931/1‑94 (MQ=60)

                                         GCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTC                                                      <  SRR4302543.1439569/94‑1 (MQ=60)

                                         GCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTC                                                      <  SRR4302543.7571693/94‑1 (MQ=60)

                                          CGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCG                                                     <  SRR4302543.420723/94‑1 (MQ=60)

                                          CGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCG                                                     >  SRR4302543.69383/1‑94 (MQ=60)

                                           GTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGC                                                    >  SRR4302543.5515962/1‑94 (MQ=60)

                                                 GTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTT                                              >  SRR4302543.4528112/1‑94 (MQ=60)

                                                   TTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCC                                            <  SRR4302543.1196559/94‑1 (MQ=60)

                                                   TTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCC                                            <  SRR4302543.696003/94‑1 (MQ=60)

                                                     TGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAG                                          >  SRR4302543.5122253/1‑94 (MQ=60)

                                                     TGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAG                                          >  SRR4302543.3828240/1‑94 (MQ=60)

                                                     TGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAG                                          <  SRR4302543.6174871/94‑1 (MQ=60)

                                                     TGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAG                                          <  SRR4302543.6373359/94‑1 (MQ=60)

                                                       CTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCTCAATCTTCCAGCA                                        >  SRR4302543.3547942/1‑94 (MQ=60)

                                                       CTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCA                                        <  SRR4302543.7230398/94‑1 (MQ=60)

                                                         GTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATT                                      >  SRR4302543.6813353/1‑94 (MQ=60)

                                                         GTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATA                                      <  SRR4302543.6977659/94‑1 (MQ=60)

                                                         GTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATA                                      >  SRR4302543.1887539/1‑94 (MQ=60)

                                                           TTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATC                                    <  SRR4302543.4263221/94‑1 (MQ=60)

                                                            TAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCG                                   <  SRR4302543.5239392/94‑1 (MQ=60)

                                                            TAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCG                                   <  SRR4302543.3799242/94‑1 (MQ=60)

                                                             AGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGA                                  >  SRR4302543.3041681/1‑94 (MQ=60)

                                                             AGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGA                                  <  SRR4302543.4433283/94‑1 (MQ=60)

                                                             AGCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGA                                  >  SRR4302543.7464289/1‑94 (MQ=60)

                                                              GCAGGCCTCATCAGAGAGTCGCTGCGGCCTCGTCAGAGATTTCACCGTTATGGTAACCTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGAT                                 <  SRR4302543.1811807/94‑1 (MQ=60)

                                                              GCAGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGAT                                 >  SRR4302543.183349/1‑94 (MQ=60)

                                                                AGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCA                               >  SRR4302543.1792686/1‑94 (MQ=60)

                                                                AGGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCA                               <  SRR4302543.438077/94‑1 (MQ=60)

                                                                 GGCCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAG                              >  SRR4302543.5037613/1‑94 (MQ=60)

                                                                   CCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAC                            >  SRR4302543.2827644/1‑94 (MQ=60)

                                                                   CCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAC                            >  SRR4302543.6441320/1‑94 (MQ=60)

                                                                   CCTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGAC                            <  SRR4302543.3923636/94‑1 (MQ=60)

                                                                    CTCATCAGAGAGTCGCTGCGACGTCGTCAGAGATTTGACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACG                           >  SRR4302543.1409333/1‑94 (MQ=60)

                                                                    CTCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACG                           >  SRR4302543.4151755/1‑94 (MQ=60)

                                                                     TCATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGC                          >  SRR4302543.7641635/1‑94 (MQ=60)

                                                                      CATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCA                         >  SRR4302543.7365113/1‑94 (MQ=60)

                                                                      CATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCA                         <  SRR4302543.255763/94‑1 (MQ=60)

                                                                      CATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCA                         <  SRR4302543.255760/94‑1 (MQ=60)

                                                                       ATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAT                        >  SRR4302543.4360766/1‑94 (MQ=60)

                                                                       ATCAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCAT                        >  SRR4302543.4360086/1‑94 (MQ=60)

                                                                         CAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCA                      <  SRR4302543.5754130/94‑1 (MQ=60)

                                                                         CAGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCA                      <  SRR4302543.7049509/94‑1 (MQ=60)

                                                                          AGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAG                     >  SRR4302543.7820527/1‑94 (MQ=60)

                                                                          AGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAG                     <  SRR4302543.5918324/94‑1 (MQ=60)

                                                                          AGAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAG                     >  SRR4302543.523760/1‑94 (MQ=60)

                                                                           GAGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGT                    >  SRR4302543.5143257/1‑94 (MQ=60)

                                                                            AGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTT                   >  SRR4302543.7913359/1‑94 (MQ=60)

                                                                            AGAGTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTT                   >  SRR4302543.2029098/1‑94 (MQ=60)

                                                                             GAGTCGCTGCTACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTT                  <  SRR4302543.3788902/94‑1 (MQ=60)

                                                                               GTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCG                <  SRR4302543.1054613/94‑1 (MQ=60)

                                                                               GTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCG                >  SRR4302543.993228/1‑94 (MQ=60)

                                                                               GTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCG                >  SRR4302543.7974116/1‑94 (MQ=60)

                                                                               GTCGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCG                <  SRR4302543.1813669/94‑1 (MQ=60)

                                                                                 CGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGT              >  SRR4302543.914069/1‑94 (MQ=60)

                                                                                 CGCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGT              >  SRR4302543.2963343/1‑94 (MQ=60)

                                                                                  GCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTG             >  SRR4302543.735999/1‑94 (MQ=60)

                                                                                  GCTGCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTG             >  SRR4302543.6146326/1‑94 (MQ=60)

                                                                                     GCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGG          <  SRR4302543.6755206/94‑1 (MQ=60)

                                                                                     GCGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGG          <  SRR4302543.4672874/94‑1 (MQ=60)

                                                                                      CGACCTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGT         >  SRR4302543.2024328/1‑94 (MQ=60)

                                                                                       GACCTCGTCAGAGATTTCACCGTTAAGGTAAACTTCCTGCACGTCGTCTCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTT        <  SRR4302543.3853094/94‑1 (MQ=60)

                                                                                          CTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCT     <  SRR4302543.2271000/94‑1 (MQ=60)

                                                                                          CTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCT     <  SRR4302543.4666290/94‑1 (MQ=60)

                                                                                          CTCGTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCT     >  SRR4302543.78372/1‑94 (MQ=60)

                                                                                             GTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA  >  SRR4302543.1908749/1‑94 (MQ=60)

                                                                                             GTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA  >  SRR4302543.5966701/1‑94 (MQ=60)

                                                                                             GTCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA  >  SRR4302543.3184958/1‑94 (MQ=60)

ACGCGCGAACCCGGATCAATGCCGAGAATAATAGCCATCACGCGTCTCCGTTTTGCTGTTTAGCAGGCCTCATCAGAGAGTCGCTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA  >  NC_000913/1945363‑1945549

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`