Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,975,207 |
T→C |
intergenic (‑44/+83) |
motA ← / ← flhC |
MotA/FlhC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,975,207 | 0 | T | C | 99.2%
| 387.7
/ ‑4.5
| 127 | intergenic (‑44/+83) | motA/flhC | MotA/FlhC |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (63/62); total (64/63) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01 |
Only 100 of 138 total aligned reads displayed.
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > NC_000913/1975117‑1975296
|
cctaaaaCGGTACCGAGAACAACCATGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCa < 2:1755220/90‑1 (MQ=255)
ccgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCa < 2:1833637/93‑1 (MQ=255)
cgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAg < 1:556259/93‑1 (MQ=255)
aaaaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGc > 2:925165/1‑93 (MQ=255)
aaaaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGc > 1:182272/1‑93 (MQ=255)
aaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGt > 2:1192122/1‑93 (MQ=255)
aaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGt < 1:4378172/93‑1 (MQ=255)
aCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGTATGTTCAGTCGCCAGGCGtt < 2:1085670/93‑1 (MQ=255)
aCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGtt > 1:238522/1‑93 (MQ=255)
cTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTa > 2:2558658/1‑93 (MQ=255)
tGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTaa < 2:3883701/93‑1 (MQ=255)
tGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTaa < 1:761748/93‑1 (MQ=255)
tGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTaa < 1:3382690/93‑1 (MQ=255)
tGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTaa > 2:3101773/1‑93 (MQ=255)
gTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAc < 1:4280323/93‑1 (MQ=255)
tACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcg > 1:2403135/1‑93 (MQ=255)
aCCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgc > 2:710860/1‑93 (MQ=255)
agaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGa < 2:1262071/93‑1 (MQ=255)
gaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAt > 2:36654/1‑93 (MQ=255)
gaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAt > 1:356350/1‑93 (MQ=255)
gaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAt > 1:3106723/1‑93 (MQ=255)
gaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAt < 1:2216413/93‑1 (MQ=255)
aacaccCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAtt < 2:3738770/93‑1 (MQ=255)
aacaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAtt < 1:2216698/93‑1 (MQ=255)
aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTggg < 2:3951607/93‑1 (MQ=255)
aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTggg < 2:1600277/93‑1 (MQ=255)
aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTggg > 2:2069061/1‑93 (MQ=255)
aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTggg > 2:1847689/1‑93 (MQ=255)
acCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTgggg > 1:11941/1‑93 (MQ=255)
acCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTgggg > 2:3436121/1‑93 (MQ=255)
ggTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaa < 1:4479131/93‑1 (MQ=255)
aCCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaa > 2:4416497/1‑93 (MQ=255)
aCCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaa > 2:4416498/1‑93 (MQ=255)
cTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAag > 1:9936/1‑93 (MQ=255)
taataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagc > 1:3856939/1‑93 (MQ=255)
taataaGATAAGCACGACATCATCCTTCCACTGCTGCCCATAACAGGATGTTCAGTCGCCAGCCGTTAACGCGCGATTGGGGCAAAAAAAagc < 1:1823251/93‑1 (MQ=255)
aataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagca < 2:3359089/93‑1 (MQ=255)
agataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCgg > 2:4592741/1‑93 (MQ=255)
gataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGt > 2:2338820/1‑93 (MQ=255)
ataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTa < 1:3993522/93‑1 (MQ=255)
taagCACGACATCATCCGTCCACTGGTGACCATGACAGGATGGTCAGTCGGCAGGCGTTAACGCGCGATTTGGGCAGAAAGTAGCAGCGGTag > 2:1296057/1‑92 (MQ=255)
agCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgt > 2:2258353/1‑93 (MQ=255)
agCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgt < 1:2582102/93‑1 (MQ=255)
aCGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGTGGCAAACAAAAGCAGCGGTAcgtcgt > 2:2859600/1‑93 (MQ=255)
aCGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgtcgt < 2:1129441/93‑1 (MQ=255)
aCGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgtcgt > 2:1760959/1‑93 (MQ=255)
cGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGtt < 2:389002/93‑1 (MQ=255)
cGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGtt < 1:2552301/93‑1 (MQ=255)
aCATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTAc < 1:3879287/93‑1 (MQ=255)
aCATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTAc < 1:4251086/93‑1 (MQ=255)
tcatcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgc > 1:3015463/1‑93 (MQ=255)
tcatcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgc < 1:1367231/93‑1 (MQ=255)
atcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctg > 2:1428234/1‑93 (MQ=255)
atcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctc > 1:4381589/1‑92 (MQ=255)
tgcTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctgc > 2:2958272/3‑93 (MQ=255)
tcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctgc < 1:1459684/93‑1 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 2:2012792/1‑93 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 1:4620770/1‑93 (MQ=255)
ttCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTgg > 2:932787/1‑93 (MQ=255)
tCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGa > 2:803425/1‑93 (MQ=255)
ccACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGaa > 2:4471417/1‑93 (MQ=255)
cACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAt > 1:2903799/1‑93 (MQ=255)
cACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAt > 1:431314/1‑93 (MQ=255)
aCTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATg < 1:1719249/93‑1 (MQ=255)
aCTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATg < 2:3488452/93‑1 (MQ=255)
cTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGCATGt > 1:3284546/1‑93 (MQ=255)
cTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGt > 2:1126357/1‑93 (MQ=255)
cTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGt < 1:1050965/93‑1 (MQ=255)
tGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGtt > 1:569824/1‑93 (MQ=255)
tGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGtt > 1:2113634/1‑93 (MQ=255)
ttGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgc > 1:1026977/1‑93 (MQ=255)
ttGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgc < 1:4640639/93‑1 (MQ=255)
tGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACAGCTGCTGGAATGTTgcg > 1:832306/1‑93 (MQ=255)
tGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcgc < 2:875375/93‑1 (MQ=255)
ccATGACAGGATGTTCAGTGGCCAGGCGTTGACGCGCGATTGGGCCAAAAAAAAGCAGCGGTACGTCGTTCCCTCTGCTGGAATGTTGCGCCt < 2:279261/93‑1 (MQ=255)
cATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTc > 1:3510618/1‑93 (MQ=255)
aTGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCa < 1:2404806/93‑1 (MQ=255)
aTGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCa > 1:3839264/1‑93 (MQ=255)
gACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAcc < 2:4424525/93‑1 (MQ=255)
aCAGGATGTTCAGTCGCCAGGCGTTTACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCg > 2:4618854/1‑93 (MQ=255)
aCAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCg < 2:3718003/93‑1 (MQ=255)
aGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTa < 2:4102873/93‑1 (MQ=255)
ggATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTAt < 2:2226409/93‑1 (MQ=255)
gATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc > 1:2127259/1‑93 (MQ=255)
gATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc > 1:1488425/1‑93 (MQ=255)
gATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc > 1:3824757/1‑93 (MQ=255)
gATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc > 1:1794073/1‑93 (MQ=255)
aTGTTCATTCGCCAGGCGTTACCGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCa < 2:1742127/93‑1 (MQ=255)
aTGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCa < 1:327898/93‑1 (MQ=255)
tGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGGGCCTCACCGTATCAg > 2:418642/1‑93 (MQ=255)
tGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAg < 2:477040/93‑1 (MQ=255)
ttCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGtt > 2:2682673/1‑93 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa < 1:2121759/93‑1 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa < 2:663604/93‑1 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa < 1:1318852/93‑1 (MQ=255)
cAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTaaa < 1:2968127/93‑1 (MQ=255)
gtcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc > 2:3486155/1‑93 (MQ=255)
gtcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc < 1:3930014/93‑1 (MQ=255)
gtcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc < 1:3870272/93‑1 (MQ=255)
tcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACa < 2:1873920/93‑1 (MQ=255)
|
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > NC_000913/1975117‑1975296
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT > NC_000913/1975114‑1975300
|
CCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGC > SRR4302535.2463732/1‑94 (MQ=60)
CGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGG < SRR4302535.560158/94‑1 (MQ=60)
GAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGC > SRR4302535.183532/1‑94 (MQ=60)
AACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTT < SRR4302535.2203143/94‑1 (MQ=60)
AACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTT > SRR4302535.240160/1‑94 (MQ=60)
AACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTT < SRR4302535.4408128/94‑1 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC < SRR4302535.3406206/94‑1 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC < SRR4302535.767117/94‑1 (MQ=60)
GTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACG < SRR4302535.4309610/94‑1 (MQ=60)
GTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACG > SRR4302535.2420422/1‑94 (MQ=60)
TACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACGTCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGC < SRR4302535.3399693/94‑1 (MQ=60)
CGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCG > SRR4302535.3548744/1‑94 (MQ=60)
AGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAT > SRR4302535.3128352/1‑94 (MQ=60)
AGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAT > SRR4302535.358812/1‑94 (MQ=60)
GAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATT < SRR4302535.2232194/94‑1 (MQ=60)
AACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTG < SRR4302535.2232479/94‑1 (MQ=60)
ACAACCAGGTATCCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGG < SRR4302535.1230519/94‑1 (MQ=60)
CAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGG < SRR4302535.2385982/94‑1 (MQ=60)
AACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGG > SRR4302535.12032/1‑94 (MQ=60)
GGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAA < SRR4302535.4509882/94‑1 (MQ=60)
AACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAA > SRR4302535.1005507/1‑94 (MQ=60)
CCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAG > SRR4302535.10013/1‑94 (MQ=60)
CTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGC > SRR4302535.3883492/1‑94 (MQ=60)
TAATAAGATAAGCACGACATCATCCTTCCACTGCTGCCCATAACAGGATGTTCAGTCGCCAGCCGTTAACGCGCGATTGGGGCAAAAAAAAGCA < SRR4302535.1836418/94‑1 (MQ=60)
AATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAG < SRR4302535.4650421/94‑1 (MQ=60)
AATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTA < SRR4302535.1914711/94‑1 (MQ=60)
ATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAC < SRR4302535.4020840/94‑1 (MQ=60)
AAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGT > SRR4302535.2538817/1‑94 (MQ=60)
AGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTC < SRR4302535.2600652/94‑1 (MQ=60)
CGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTA > SRR4302535.3956792/1‑94 (MQ=60)
CGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTA < SRR4302535.2570676/94‑1 (MQ=60)
ACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACC < SRR4302535.3905918/94‑1 (MQ=60)
ACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACC < SRR4302535.4280206/94‑1 (MQ=60)
ATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGC > SRR4302535.3036595/1‑94 (MQ=60)
TCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCT < SRR4302535.1377004/94‑1 (MQ=60)
CATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTC > SRR4302535.4411565/1‑94 (MQ=60)
TCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCT < SRR4302535.1470142/94‑1 (MQ=60)
CCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTG < SRR4302535.312399/94‑1 (MQ=60)
CCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTG > SRR4302535.4652164/1‑94 (MQ=60)
TTCCACGGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCTGTACGTCGGTAGCGCTGCGGGA > SRR4302535.782375/1‑94 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT > SRR4302535.2924325/1‑94 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT > SRR4302535.434315/1‑94 (MQ=60)
ACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGCATGT > SRR4302535.3307377/1‑94 (MQ=60)
ACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGT < SRR4302535.1731683/94‑1 (MQ=60)
CTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT > SRR4302535.573825/1‑94 (MQ=60)
CTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT < SRR4302535.1058439/94‑1 (MQ=60)
CTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT > SRR4302535.2128888/1‑94 (MQ=60)
GTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGC > SRR4302535.1034270/1‑94 (MQ=60)
TTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCG < SRR4302535.4672102/94‑1 (MQ=60)
TTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACAGCTGCTGGAATGTTGCG > SRR4302535.838137/1‑94 (MQ=60)
TGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGC < SRR4302535.4344508/94‑1 (MQ=60)
CCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTC > SRR4302535.3535010/1‑94 (MQ=60)
CATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCA > SRR4302535.3865727/1‑94 (MQ=60)
CATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCA < SRR4302535.5289/94‑1 (MQ=60)
ATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAC < SRR4302535.2422110/94‑1 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC > SRR4302535.1499097/1‑94 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC > SRR4302535.3851137/1‑94 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC > SRR4302535.1807044/1‑94 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC > SRR4302535.2142597/1‑94 (MQ=60)
ATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAG < SRR4302535.1498565/94‑1 (MQ=60)
ATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAG < SRR4302535.1750855/94‑1 (MQ=60)
ATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAG < SRR4302535.330172/94‑1 (MQ=60)
GTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTT < SRR4302535.293575/94‑1 (MQ=60)
TCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAA < SRR4302535.1328280/94‑1 (MQ=60)
TCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAA < SRR4302535.2137058/94‑1 (MQ=60)
CAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAC < SRR4302535.2988957/94‑1 (MQ=60)
AGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAC > SRR4302535.3870264/1‑94 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA < SRR4302535.3956853/94‑1 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA < SRR4302535.3896871/94‑1 (MQ=60)
TCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAG < SRR4302535.4118550/94‑1 (MQ=60)
TCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAG > SRR4302535.262582/1‑94 (MQ=60)
GCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCC < SRR4302535.113065/94‑1 (MQ=60)
CCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT > SRR4302535.3309469/1‑94 (MQ=60)
CCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT < SRR4302535.4668734/94‑1 (MQ=60)
CCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT < SRR4302535.122530/94‑1 (MQ=60)
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CCGCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT > NC_000913/1975114‑1975300
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
