Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,975,207 |
T→C |
intergenic (‑44/+83) |
motA ← / ← flhC |
MotA/FlhC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,975,207 | 0 | T | C | 99.6%
| 781.2
/ NA
| 252 | intergenic (‑44/+83) | motA/flhC | MotA/FlhC |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (139/112); total (140/112) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 274 total aligned reads displayed.
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > NC_000913/1975117‑1975296
|
ccgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCa > 2:4067802/1‑93 (MQ=255)
cgAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAg > 2:3269361/1‑93 (MQ=255)
gAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAgg > 2:4798395/1‑93 (MQ=255)
gAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAgg < 2:6389184/93‑1 (MQ=255)
aaaaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGc > 1:1836882/1‑93 (MQ=255)
aaaaCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGc > 1:2787643/1‑93 (MQ=255)
aCTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGtt > 1:4846376/1‑93 (MQ=255)
tGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTaa < 1:4113911/93‑1 (MQ=255)
tACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcg > 2:5860404/1‑93 (MQ=255)
aCCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgc < 1:1648219/93‑1 (MQ=255)
aCCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgc < 1:5915008/93‑1 (MQ=255)
aCCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgc < 2:3114806/93‑1 (MQ=255)
ccGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgcg > 2:6069200/1‑93 (MQ=255)
ccGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgcg > 1:3564512/1‑93 (MQ=255)
cGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAcgcgc > 2:7152580/1‑93 (MQ=255)
gaACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAt > 1:5548403/1‑93 (MQ=255)
aacaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAtt < 2:2414074/93‑1 (MQ=255)
aacaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAtt > 1:4593538/1‑93 (MQ=255)
acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTg < 2:3252163/93‑1 (MQ=255)
acaacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTg < 1:6875060/93‑1 (MQ=255)
caacCAGGTAACCTAATAAGATAAGCACGACATTATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTgg < 1:7607409/93‑1 (MQ=255)
aacCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTggg > 2:3479921/1‑93 (MQ=255)
acCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTgggg > 2:5848713/1‑93 (MQ=255)
ccAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGc > 2:6343709/1‑93 (MQ=255)
ccAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGc < 1:7146150/93‑1 (MQ=255)
ccAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGc < 1:2576319/93‑1 (MQ=255)
aGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaa > 2:3766570/1‑93 (MQ=255)
aGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaa > 1:334854/1‑93 (MQ=255)
aCCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaa < 1:1374024/93‑1 (MQ=255)
aCCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaa > 2:7310604/1‑93 (MQ=255)
ccTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaaa < 2:7371332/93‑1 (MQ=255)
ccTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCaaaaaaaa < 1:115876/93‑1 (MQ=255)
taataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagc > 1:3855561/1‑93 (MQ=255)
aataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTACCGCGCGATTGGGGCAAAAAAAagca > 2:2224412/1‑93 (MQ=255)
aataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagca < 2:1177460/93‑1 (MQ=255)
aataaGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagca > 2:4737449/1‑93 (MQ=255)
taagataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAagcagc < 2:4545805/93‑1 (MQ=255)
agataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCgg > 1:5071313/1‑93 (MQ=255)
ataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTa < 2:402306/93‑1 (MQ=255)
ataagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAGCAGCGGTAc < 2:7417241/93‑1 (MQ=255)
taagCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAc < 1:4197953/93‑1 (MQ=255)
agCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgt < 1:2268028/93‑1 (MQ=255)
gCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTAcgtc < 2:4204417/93‑1 (MQ=255)
aCATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTAc > 1:565723/1‑93 (MQ=255)
aCATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTAc > 2:4923004/1‑93 (MQ=255)
aCATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTAc < 1:4469756/93‑1 (MQ=255)
tcatcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgc > 1:6415078/1‑93 (MQ=255)
tcatcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgc > 1:3915018/1‑93 (MQ=255)
tcatcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgc > 2:4312686/1‑93 (MQ=255)
catcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgct < 1:301270/93‑1 (MQ=255)
catcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgct > 2:443527/1‑93 (MQ=255)
atcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctg > 1:423089/1‑93 (MQ=255)
tcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctgc < 1:3195985/93‑1 (MQ=255)
tcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctgc < 2:1822011/93‑1 (MQ=255)
tcCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCgctgc > 1:7889144/1‑93 (MQ=255)
ccTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGTAGCGGTACGTCGTTACCgctgct > 2:5654301/1‑93 (MQ=255)
ctcccACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg < 2:5915297/90‑1 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 2:2103722/1‑93 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 1:3839035/1‑93 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 2:2180009/1‑93 (MQ=255)
cTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGCTAACGCGCGATTGGGGCACAAAAAAGCAGCGGTACGTCGTTACCGctgctg > 1:2413258/1‑93 (MQ=255)
ttCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTgg > 1:5411966/1‑93 (MQ=255)
ccACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGaa > 2:460602/1‑93 (MQ=255)
ccACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGaa < 1:7682354/93‑1 (MQ=255)
cACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAt > 1:285744/1‑93 (MQ=255)
cACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAt > 1:6088569/1‑93 (MQ=255)
aCTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTCCTGGAATg > 2:1540985/1‑93 (MQ=255)
cTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGt > 1:2211458/1‑93 (MQ=255)
cTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGt < 1:4278589/93‑1 (MQ=255)
tGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGtt > 2:1045206/1‑93 (MQ=255)
ttGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgc > 1:3979541/1‑93 (MQ=255)
ttGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgc < 2:5734181/93‑1 (MQ=255)
tGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTgcg < 2:6461092/93‑1 (MQ=255)
aCCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAGAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGcc < 1:7453761/93‑1 (MQ=255)
aCCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGcc < 1:7535345/93‑1 (MQ=255)
aTGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCa < 2:127153/93‑1 (MQ=255)
aTGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCa < 1:1047474/93‑1 (MQ=255)
aTGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCa < 2:1964596/93‑1 (MQ=255)
tGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAc > 1:3389870/1‑93 (MQ=255)
tGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAc > 1:4293376/1‑93 (MQ=255)
tGACAGGATGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAc > 2:7444771/1‑93 (MQ=255)
gACAGGATTTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCTTTACCGCTGCTGGAATGTTGCGCCTCAcc < 2:6212124/93‑1 (MQ=255)
cAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGt < 2:5307023/93‑1 (MQ=255)
ggATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTAt < 1:874887/93‑1 (MQ=255)
gATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATc > 1:7064728/1‑93 (MQ=255)
aTGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCa > 1:7335113/1‑93 (MQ=255)
aTGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCa > 2:5221364/1‑93 (MQ=255)
tGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAg > 1:7820138/1‑93 (MQ=255)
ttCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTT‑CCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa > 2:7762852/1‑93 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa < 2:5968459/93‑1 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa > 1:5749413/1‑93 (MQ=255)
tCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTa < 1:1496605/93‑1 (MQ=255)
aGTCGCCAGGCGTTGACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTaaa < 1:6594219/93‑1 (MQ=255)
aGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTaaa < 2:4117172/93‑1 (MQ=255)
gtcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc > 2:6695742/1‑93 (MQ=255)
gtcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAc < 1:3736928/93‑1 (MQ=255)
tcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACa < 2:1664184/93‑1 (MQ=255)
tcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACa < 1:10141/93‑1 (MQ=255)
tcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACa > 1:5834130/1‑93 (MQ=255)
tcgccAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACa > 1:4532947/1‑93 (MQ=255)
|
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > NC_000913/1975117‑1975296
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT > NC_000913/1975116‑1975300
|
GCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCA < SRR4302543.3234649/94‑1 (MQ=60)
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAG < SRR4302543.3590126/94‑1 (MQ=60)
CCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAG > SRR4302543.3231786/1‑94 (MQ=60)
CGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGG < SRR4302543.6776794/94‑1 (MQ=60)
GAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGC > SRR4302543.2813085/1‑94 (MQ=60)
GAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGC < SRR4302543.2827648/94‑1 (MQ=60)
GAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGC > SRR4302543.1853410/1‑94 (MQ=60)
AAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGT > SRR4302543.1046684/1‑94 (MQ=60)
AACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTT > SRR4302543.4890570/1‑94 (MQ=60)
ACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTA < SRR4302543.5957862/94‑1 (MQ=60)
ACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTA < SRR4302543.2526226/94‑1 (MQ=60)
ACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTA > SRR4302543.7609699/1‑94 (MQ=60)
ACTGAACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGGTGACCATGACAGGATGTTCAGTCGCCAGGCGTTA < SRR4302543.2526225/94‑1 (MQ=60)
CTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAA > SRR4302543.6386511/1‑94 (MQ=60)
CTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAA > SRR4302543.6509182/1‑94 (MQ=60)
CTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAA > SRR4302543.4059958/1‑94 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC < SRR4302543.7673482/94‑1 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC > SRR4302543.7510224/1‑94 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC > SRR4302543.7751587/1‑94 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC > SRR4302543.7510367/1‑94 (MQ=60)
TGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAAC < SRR4302543.4150962/94‑1 (MQ=60)
GTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACG > SRR4302543.7818356/1‑94 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG > SRR4302543.3596058/1‑94 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG > SRR4302543.3596059/1‑94 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG < SRR4302543.5555170/94‑1 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG < SRR4302543.5969027/94‑1 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG > SRR4302543.4560212/1‑94 (MQ=60)
ACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCG < SRR4302543.1662960/94‑1 (MQ=60)
GAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGA < SRR4302543.7399658/94‑1 (MQ=60)
AGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGAT > SRR4302543.5598863/1‑94 (MQ=60)
GAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATT < SRR4302543.796038/94‑1 (MQ=60)
GAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATT > SRR4302543.4635260/1‑94 (MQ=60)
ACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGG < SRR4302543.2251550/94‑1 (MQ=60)
ACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGG < SRR4302543.6939787/94‑1 (MQ=60)
CAACCAGGTAACCTAATAAGATAAGCACGACATTATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGG < SRR4302543.7679633/94‑1 (MQ=60)
AACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGG < SRR4302543.5165411/94‑1 (MQ=60)
CCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑A < SRR4302543.2599798/94‑1 (MQ=60)
CCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑A < SRR4302543.7215605/94‑1 (MQ=60)
CCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑A < SRR4302543.2113398/94‑1 (MQ=60)
CCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑A > SRR4302543.5320976/1‑94 (MQ=60)
CAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AA > SRR4302543.337925/1‑94 (MQ=60)
CAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AA < SRR4302543.1285900/94‑1 (MQ=60)
GTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAA < SRR4302543.7154045/94‑1 (MQ=60)
GTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAA < SRR4302543.3870288/94‑1 (MQ=60)
TAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAA < SRR4302543.4569493/94‑1 (MQ=60)
TAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAA > SRR4302543.1088156/1‑94 (MQ=60)
ACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAA < SRR4302543.7764937/94‑1 (MQ=60)
ACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAA < SRR4302543.1386368/94‑1 (MQ=60)
CCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAG < SRR4302543.116928/94‑1 (MQ=60)
CCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAG > SRR4302543.4591253/1‑94 (MQ=60)
CCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAG > SRR4302543.5025883/1‑94 (MQ=60)
CCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAG > SRR4302543.3594531/1‑94 (MQ=60)
CTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGC > SRR4302543.6362315/1‑94 (MQ=60)
CTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGC > SRR4302543.7939808/1‑94 (MQ=60)
CTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGC > SRR4302543.3889629/1‑94 (MQ=60)
CTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGA > SRR4302543.2914357/1‑94 (MQ=60)
AATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAG < SRR4302543.4831124/94‑1 (MQ=60)
AATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAG > SRR4302543.1530871/1‑94 (MQ=60)
ATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGC > SRR4302543.5713313/1‑94 (MQ=60)
ATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGC > SRR4302543.4390221/1‑94 (MQ=60)
ATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGC < SRR4302543.610204/94‑1 (MQ=60)
ATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGC > SRR4302543.3980413/1‑94 (MQ=60)
ATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGC < SRR4302543.6982207/94‑1 (MQ=60)
TAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCG > SRR4302543.5762999/1‑94 (MQ=60)
AAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGG < SRR4302543.2763429/94‑1 (MQ=60)
AAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGG < SRR4302543.7152898/94‑1 (MQ=60)
AAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGG > SRR4302543.5117342/1‑94 (MQ=60)
GATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTA > SRR4302543.1794737/1‑94 (MQ=60)
ATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGCAAAAAAAAAGCAGCGGTA > SRR4302543.4276061/1‑94 (MQ=60)
ATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTAC < SRR4302543.3401962/94‑1 (MQ=60)
TAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACG < SRR4302543.4236013/94‑1 (MQ=60)
TAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACG < SRR4302543.4236012/94‑1 (MQ=60)
AGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTC < SRR4302543.2288741/94‑1 (MQ=60)
GCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCG < SRR4302543.3968892/94‑1 (MQ=60)
GCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTAAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCG < SRR4302543.3219294/94‑1 (MQ=60)
CACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGT > SRR4302543.3057203/1‑94 (MQ=60)
CCGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTT < SRR4302543.5021751/94‑1 (MQ=60)
ACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTT > SRR4302543.5834976/1‑94 (MQ=60)
ACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGAGTTAACGCGCGATTGGGGC‑AAAAAAAAGACGCGGTACGTCGTT > SRR4302543.5834974/1‑94 (MQ=60)
CGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTA < SRR4302543.1335440/94‑1 (MQ=60)
GACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTAC > SRR4302543.570905/1‑94 (MQ=60)
ACATCATCCTTCCGCTGTTGACCAGCACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACC < SRR4302543.7742629/94‑1 (MQ=60)
ACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACC > SRR4302543.6570938/1‑94 (MQ=60)
ACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACC < SRR4302543.4510287/94‑1 (MQ=60)
CATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCG > SRR4302543.4339751/1‑94 (MQ=60)
ATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGC > SRR4302543.4327650/1‑94 (MQ=60)
ATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGC > SRR4302543.2145560/1‑94 (MQ=60)
ATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGC > SRR4302543.6475506/1‑94 (MQ=60)
ATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGC > SRR4302543.3949576/1‑94 (MQ=60)
CATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTCACGAGCGATTGGGGC‑AAGAAACAGCAGCGGTCCGTCGTTCACGCTG > SRR4302543.427045/1‑94 (MQ=60)
CATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTG < SRR4302543.303977/94‑1 (MQ=60)
CATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTG > SRR4302543.427046/1‑94 (MQ=60)
CATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTG > SRR4302543.3919377/1‑94 (MQ=60)
ATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGC > SRR4302543.7963349/1‑94 (MQ=60)
ATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGC > SRR4302543.2397922/1‑94 (MQ=60)
TCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCT < SRR4302543.3224799/94‑1 (MQ=60)
CCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTG > SRR4302543.3872918/1‑94 (MQ=60)
CCTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGCTAACGCGCGATTGGGGC‑ACAAAAAAGCAGCGGTACGTCGTTACCGCTGCTG > SRR4302543.2435064/1‑94 (MQ=60)
CTTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGG > SRR4302543.5461192/1‑94 (MQ=60)
TTCCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGA > SRR4302543.1665327/1‑94 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT > SRR4302543.6146275/1‑94 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT < SRR4302543.7755128/94‑1 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT > SRR4302543.139008/1‑94 (MQ=60)
CCACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAAT > SRR4302543.288286/1‑94 (MQ=60)
CACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCTCTGCTGGAATG < SRR4302543.155665/94‑1 (MQ=60)
ACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGT < SRR4302543.5904436/94‑1 (MQ=60)
ACTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGT > SRR4302543.2231380/1‑94 (MQ=60)
CTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT < SRR4302543.4317474/94‑1 (MQ=60)
CTGTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT < SRR4302543.2352636/94‑1 (MQ=60)
CTGTTGACCATGACAGGAGGTTCAGTCGCCCGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTT < SRR4302543.4317473/94‑1 (MQ=60)
GTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGC > SRR4302543.4014831/1‑94 (MQ=60)
GTTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGC > SRR4302543.4014832/1‑94 (MQ=60)
TTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCG < SRR4302543.3811364/94‑1 (MQ=60)
TTGACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCG < SRR4302543.68346/94‑1 (MQ=60)
GACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCC < SRR4302543.2617719/94‑1 (MQ=60)
ACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AGAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCT < SRR4302543.7525179/94‑1 (MQ=60)
ACCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCT < SRR4302543.7607192/94‑1 (MQ=60)
CCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTC > SRR4302543.292656/1‑94 (MQ=60)
CCATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑‑AAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCC > SRR4302543.4575893/1‑94 (MQ=60)
ATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAC > SRR4302543.3420264/1‑94 (MQ=60)
ATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAC > SRR4302543.7565604/1‑94 (MQ=60)
ATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAC > SRR4302543.4332407/1‑94 (MQ=60)
ATGACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCAC < SRR4302543.1056854/94‑1 (MQ=60)
GACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCG < SRR4302543.5474480/94‑1 (MQ=60)
ACAGGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGT > SRR4302543.1133769/1‑94 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC < SRR4302543.3701205/94‑1 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC > SRR4302543.7133319/1‑94 (MQ=60)
GGATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATC < SRR4302543.882675/94‑1 (MQ=60)
GATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCA > SRR4302543.7405687/1‑94 (MQ=60)
ATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAG < SRR4302543.3884535/94‑1 (MQ=60)
ATGTTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAG > SRR4302543.7893810/1‑94 (MQ=60)
TTCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTA > SRR4302543.5801823/1‑94 (MQ=60)
TCAGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAA < SRR4302543.1510072/94‑1 (MQ=60)
AGTCGCCAGGCGTTGACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAC < SRR4302543.6656354/94‑1 (MQ=60)
AGTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAAC > SRR4302543.3906064/1‑94 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > SRR4302543.4574210/1‑94 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > SRR4302543.876656/1‑94 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA > SRR4302543.5887195/1‑94 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA < SRR4302543.3266442/94‑1 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA < SRR4302543.4156293/94‑1 (MQ=60)
GTCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACA < SRR4302543.3769800/94‑1 (MQ=60)
TCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAG < SRR4302543.10230/94‑1 (MQ=60)
TCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAG < SRR4302543.5668400/94‑1 (MQ=60)
TCGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAG < SRR4302543.7304075/94‑1 (MQ=60)
CGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGC > SRR4302543.1073589/1‑94 (MQ=60)
CGCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGC < SRR4302543.5686326/94‑1 (MQ=60)
GCCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCC < SRR4302543.4987669/94‑1 (MQ=60)
CCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT < SRR4302543.1658987/94‑1 (MQ=60)
|
GCCGAAAACTGTACCGAGAACAACCAGGTAACCTAATAAGATAAGCACGACATCATCCTTCCACTGTTGACCATGACAGGATGTTCAGTCGTCAGGCGTTAACGCGCGATTGGGGC‑AAAAAAAAGCAGCGGTACGTCGTTACCGCTGCTGGAATGTTGCGCCTCACCGTATCAGTTAAACAGCCT > NC_000913/1975116‑1975300
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
