Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,983,890 |
T→C |
T88A (ACT→GCT) |
araF ← |
L‑arabinose‑binding periplasmic protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,983,890 | 0 | T | C | 100.0%
| 374.7
/ NA
| 120 | T88A (ACT→GCT) | araF | L‑arabinose‑binding periplasmic protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (66/54); total (66/54) |
Only 100 of 121 total aligned reads displayed.
TTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGTACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAA > NC_000913/1983802‑1983979
|
ttAGCAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaa < 2:2742541/93‑1 (MQ=255)
ttAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaa > 1:505314/1‑93 (MQ=255)
ttAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaa > 2:3544753/1‑93 (MQ=255)
ttAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaa > 2:2603810/1‑93 (MQ=255)
tAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaaa < 1:2894970/93‑1 (MQ=255)
tAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACaaa < 2:379653/93‑1 (MQ=255)
aaCAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAAt < 2:4559009/93‑1 (MQ=255)
aCAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGCGCCGAGTTTGGGGTCCGGAGCACAAATa > 1:344054/1‑93 (MQ=255)
cAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATaa < 2:4441743/93‑1 (MQ=255)
aaCTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACg > 1:1469306/1‑93 (MQ=255)
aaCTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACg > 2:267043/1‑93 (MQ=255)
aCTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGATTGGGGTCCGGAGCACAAATAACGa > 2:1597563/1‑93 (MQ=255)
cTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGGTTGGGGTCCGGAGCACAAATAACCaa > 2:420994/1‑93 (MQ=255)
tGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGaaa > 2:4547776/1‑93 (MQ=255)
tGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGaaa > 1:4642058/1‑93 (MQ=255)
tGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGaaa < 1:2331426/93‑1 (MQ=255)
ggTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAAc < 1:3183620/93‑1 (MQ=255)
ggTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAAc > 1:2304393/1‑93 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt > 1:1803888/1‑93 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt < 2:4027277/93‑1 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt > 2:4214342/1‑93 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt < 2:1954929/93‑1 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt > 1:4626857/1‑93 (MQ=255)
tCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCt < 2:134468/93‑1 (MQ=255)
aTCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCttt > 2:2798980/1‑93 (MQ=255)
aTCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCttt > 2:4064482/1‑93 (MQ=255)
aTCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCttt < 2:1279981/93‑1 (MQ=255)
aTCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCttt < 2:748235/93‑1 (MQ=255)
aTCCACGGCAATGACTTTCATATCGTAGCCACGCGCTGTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCttt < 2:454700/93‑1 (MQ=255)
tCCCCGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCtttt < 2:304167/93‑1 (MQ=255)
tCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCtttt > 2:2959306/1‑93 (MQ=255)
tCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCtttt > 2:1063515/1‑93 (MQ=255)
ccACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTg < 1:4661737/93‑1 (MQ=255)
cACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTgc < 1:348933/93‑1 (MQ=255)
ggCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGcc > 2:3532136/1‑93 (MQ=255)
ggCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGcc < 1:1018492/93‑1 (MQ=255)
gCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCa > 1:1067325/1‑93 (MQ=255)
cAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCAc > 1:3593744/1‑93 (MQ=255)
cAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCAc < 2:142730/93‑1 (MQ=255)
cAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCAc < 1:2639094/93‑1 (MQ=255)
aTGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTg < 2:1865528/93‑1 (MQ=255)
aTGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTg > 2:813747/1‑93 (MQ=255)
aTGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTg < 1:2699198/93‑1 (MQ=255)
aCTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCa > 1:3258200/1‑93 (MQ=255)
aCTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCa > 2:2230178/1‑93 (MQ=255)
tttCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGc > 1:120602/1‑93 (MQ=255)
tttCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGc > 1:1676123/1‑93 (MQ=255)
tttCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGc > 2:3407017/1‑93 (MQ=255)
tCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCa > 2:789099/1‑93 (MQ=255)
tCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCa < 2:1810575/93‑1 (MQ=255)
cATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAg > 2:3805619/1‑93 (MQ=255)
cATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAg < 1:3074181/93‑1 (MQ=255)
tatCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGc < 2:3271463/93‑1 (MQ=255)
atCGTAGCCACGCGCTTTCGCGACGATGGTAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCt > 1:4525866/1‑93 (MQ=255)
atCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCt > 1:3323896/1‑93 (MQ=255)
tCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTg < 2:1441376/93‑1 (MQ=255)
gTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTc > 2:3167518/1‑93 (MQ=255)
gTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTc > 2:417524/1‑93 (MQ=255)
gTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTc > 2:1179088/1‑93 (MQ=255)
gTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTc > 1:108186/1‑93 (MQ=255)
gCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGAt < 1:245778/93‑1 (MQ=255)
ccACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATc < 2:321013/93‑1 (MQ=255)
ccACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATc < 1:1533386/93‑1 (MQ=255)
cACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATcg > 1:900189/1‑93 (MQ=255)
gcgcTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGt > 2:3381269/1‑93 (MQ=255)
gcgcTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGt < 2:3051367/93‑1 (MQ=255)
gcgcTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGt > 1:2049206/1‑93 (MQ=255)
gcTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTc > 1:1147316/1‑93 (MQ=255)
cTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGCTCGCGTTCa > 1:2607716/1‑93 (MQ=255)
cTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCa > 2:2391289/1‑93 (MQ=255)
tttCGCGACGATGGCAGAGCCGGGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCaa > 2:1709155/1‑93 (MQ=255)
tttCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCaa < 1:1623104/93‑1 (MQ=255)
tCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATg > 1:2949793/1‑93 (MQ=255)
gcgACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGtt > 1:4129915/1‑93 (MQ=255)
gacgaTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGtttt < 1:1187832/93‑1 (MQ=255)
gacgaTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGtttt > 1:1004534/1‑93 (MQ=255)
cgaTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGtttttt < 2:1057653/93‑1 (MQ=255)
gaTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTc > 1:898983/1‑93 (MQ=255)
gaTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTc > 1:2481862/1‑93 (MQ=255)
aTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAGATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTTAATGTTTTTTCg > 2:1543915/1‑93 (MQ=255)
aTGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCg > 2:4658514/1‑93 (MQ=255)
tGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGc > 1:4344769/1‑93 (MQ=255)
tGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGc > 2:2158553/1‑93 (MQ=255)
gCAGAGCCGATTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCa < 2:1862582/93‑1 (MQ=255)
gCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCa < 2:1263770/93‑1 (MQ=255)
agagCCGAGTTTGGGGTCCGGAGCNCAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATc < 2:704123/93‑1 (MQ=255)
gagCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATcc > 1:3414120/1‑93 (MQ=255)
ccGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCcggc > 1:1277566/1‑93 (MQ=255)
gAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCcggcac < 1:1741629/93‑1 (MQ=255)
tttGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCcggcacggc > 1:4463737/1‑93 (MQ=255)
tGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCaa < 1:4258491/93‑1 (MQ=255)
ggggTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCATGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAAt < 1:1004532/93‑1 (MQ=255)
gggTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATc < 2:1317464/93‑1 (MQ=255)
tCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTta < 2:2021277/93‑1 (MQ=255)
tCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGCTCAATGTTTTTTCGCCATCCGGCACGGCTATCTta > 1:824117/1‑93 (MQ=255)
ccGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTtaa > 2:1774961/1‑93 (MQ=255)
cGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTtaat < 2:2465654/93‑1 (MQ=255)
cGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTtaat < 1:4237372/93‑1 (MQ=255)
gAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTtaataa < 2:3663659/93‑1 (MQ=255)
gAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTtaataa < 2:2043785/93‑1 (MQ=255)
|
TTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGTACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAA > NC_000913/1983802‑1983979
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGCGTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGTACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAACCTC > NC_000913/1983797‑1983983
|
TGGCGTTAACAAACTGGTCATCCACGTCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGC < SRR4302535.75681/94‑1 (MQ=60)
TGGCGTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGC > SRR4302535.2415536/1‑94 (MQ=60)
TGGCGTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGC < SRR4302535.4573228/94‑1 (MQ=60)
GGCGTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCA > SRR4302535.1296172/1‑94 (MQ=60)
GTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAA > SRR4302535.508846/1‑94 (MQ=60)
TAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAAT < SRR4302535.2915445/94‑1 (MQ=60)
AACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGCGCCGAGTTTGGGGTCCGGAGCACAAATA > SRR4302535.346429/1‑94 (MQ=60)
CAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGCGCACAAATAAC > SRR4302535.593288/1‑94 (MQ=60)
AAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACG > SRR4302535.1479831/1‑94 (MQ=60)
ACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAA < SRR4302535.3350475/94‑1 (MQ=60)
CTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAA > SRR4302535.4673524/1‑94 (MQ=60)
TGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAAC < SRR4302535.2348101/94‑1 (MQ=60)
TGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAAC > SRR4302535.2320873/1‑94 (MQ=60)
GGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACC < SRR4302535.3205613/94‑1 (MQ=60)
GTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCT > SRR4302535.1816925/1‑94 (MQ=60)
GTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCT > SRR4302535.4658269/1‑94 (MQ=60)
CCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGC < SRR4302535.4693264/94‑1 (MQ=60)
CACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCG < SRR4302535.351335/94‑1 (MQ=60)
GGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCA < SRR4302535.1025729/94‑1 (MQ=60)
GGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCA > SRR4302535.1074915/1‑94 (MQ=60)
GCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCAC > SRR4302535.3618685/1‑94 (MQ=60)
CAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACT < SRR4302535.2657998/94‑1 (MQ=60)
AATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTG > SRR4302535.4200514/1‑94 (MQ=60)
ATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGG < SRR4302535.2718488/94‑1 (MQ=60)
GACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCA > SRR4302535.3280843/1‑94 (MQ=60)
CTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGC > SRR4302535.1688260/1‑94 (MQ=60)
CTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGC > SRR4302535.121447/1‑94 (MQ=60)
CTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGC < SRR4302535.1972192/94‑1 (MQ=60)
CATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGG < SRR4302535.3095636/94‑1 (MQ=60)
TATCGTAGCCACGCGCTTTCGCGACGATGGTAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCT > SRR4302535.4556871/1‑94 (MQ=60)
TATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCT > SRR4302535.3347020/1‑94 (MQ=60)
TATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCT > SRR4302535.2960902/1‑94 (MQ=60)
CGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTC > SRR4302535.108952/1‑94 (MQ=60)
GCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATC < SRR4302535.247460/94‑1 (MQ=60)
CCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCG > SRR4302535.906563/1‑94 (MQ=60)
CCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCG < SRR4302535.1544435/94‑1 (MQ=60)
CGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGT > SRR4302535.2063959/1‑94 (MQ=60)
CGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTC > SRR4302535.1155491/1‑94 (MQ=60)
GCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGCTCGCGTTCA > SRR4302535.2626425/1‑94 (MQ=60)
GCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCA > SRR4302535.2626424/1‑94 (MQ=60)
TTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAAT < SRR4302535.1634820/94‑1 (MQ=60)
TTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATG > SRR4302535.2970515/1‑94 (MQ=60)
CGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTT > SRR4302535.4158174/1‑94 (MQ=60)
CGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTT > SRR4302535.1011667/1‑94 (MQ=60)
GACGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTT < SRR4302535.1196329/94‑1 (MQ=60)
CGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTC > SRR4302535.905352/1‑94 (MQ=60)
CGATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTC > SRR4302535.2499755/1‑94 (MQ=60)
ATGGCAGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGC > SRR4302535.4374494/1‑94 (MQ=60)
AGAGCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCC > SRR4302535.3437873/1‑94 (MQ=60)
GCCGAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGC > SRR4302535.1286691/1‑94 (MQ=60)
GAGTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACG < SRR4302535.1754218/94‑1 (MQ=60)
GTTTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGC > SRR4302535.4494351/1‑94 (MQ=60)
TTGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAA < SRR4302535.112315/94‑1 (MQ=60)
TGGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAAT < SRR4302535.4287661/94‑1 (MQ=60)
GGGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCATGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATC < SRR4302535.1011665/94‑1 (MQ=60)
GGGTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCT < SRR4302535.4618767/94‑1 (MQ=60)
GTCCGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGCTCAATGTTTTTTCGCCATCCGGCACGGCTATCTTA > SRR4302535.829892/1‑94 (MQ=60)
CGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATA > SRR4302535.1507592/1‑94 (MQ=60)
CGGAGCACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATA < SRR4302535.4266368/94‑1 (MQ=60)
CACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAACCTC > SRR4302535.4429189/1‑94 (MQ=60)
CACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAACCTC > SRR4302535.781886/1‑94 (MQ=60)
CACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAACCTC > SRR4302535.2736348/1‑94 (MQ=60)
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TGGCGTTAACAAACTGGTCATCCACGGCAATGACTTTCATATCGTAGCCACGCGCTTTCGCGACGATGGCAGAGCCGAGTTTGGGGTCCGGAGTACAAATAACGAAACCTTTTGCGCCACTGGCAGCCAGGCTGTCGATCGCGTTCAATGTTTTTTCGCCATCCGGCACGGCAATCTTAATAACCTC > NC_000913/1983797‑1983983
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
