Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,990,664 |
A→G |
S59S (AGT→AGC) |
pgsA ← |
phosphatidylglycerophosphate synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,990,664 | 0 | A | G | 100.0%
| 380.3
/ NA
| 121 | S59S (AGT→AGC) | pgsA | phosphatidylglycerophosphate synthetase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (77/44); total (77/44) |
Only 100 of 125 total aligned reads displayed.
CCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCA > NC_000913/1990574‑1990753
|
caGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGctt > 1:1249480/1‑92 (MQ=255)
caGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGctt < 1:2095539/93‑2 (MQ=255)
caGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGctt > 2:2426807/1‑92 (MQ=255)
gCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTg > 2:1543987/1‑93 (MQ=255)
gCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTg > 2:2997227/1‑93 (MQ=255)
tgtgATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGt > 1:1836113/1‑93 (MQ=255)
tgATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTc < 2:492378/93‑1 (MQ=255)
gATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAATTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTcc > 1:2511668/1‑93 (MQ=255)
aTAATGCTCGGTTATCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa > 2:3264725/1‑93 (MQ=255)
aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTccg > 2:1881561/1‑92 (MQ=255)
aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa > 1:1803891/1‑93 (MQ=255)
aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa < 1:1836045/93‑1 (MQ=255)
aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa < 2:525136/93‑1 (MQ=255)
aTAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCa > 2:4493243/1‑93 (MQ=255)
tAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAg < 1:3088181/93‑1 (MQ=255)
aaTGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAgc < 1:4417095/93‑1 (MQ=255)
tGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAgcgg < 1:3527651/93‑1 (MQ=255)
cTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAgcggcg < 2:2929655/93‑1 (MQ=255)
gTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGcc > 1:804920/1‑93 (MQ=255)
aCCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCgaga < 2:3111648/93‑1 (MQ=255)
ccAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaa > 1:2084091/1‑93 (MQ=255)
cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa < 1:3036091/93‑1 (MQ=255)
cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa < 1:2350928/93‑1 (MQ=255)
cAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGaaa > 1:776060/1‑93 (MQ=255)
aGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCAGCGTGCCAGaaaa > 1:4568516/1‑93 (MQ=255)
gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc > 2:4273081/1‑93 (MQ=255)
gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc > 2:1477408/1‑93 (MQ=255)
gCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAc > 1:4241648/1‑93 (MQ=255)
aCCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCa > 2:163896/1‑93 (MQ=255)
aCCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCa < 1:289950/93‑1 (MQ=255)
ccATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGACAACCAt > 1:1741778/1‑93 (MQ=255)
ccATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAt > 1:76431/1‑93 (MQ=255)
ccATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAt > 1:3928160/1‑93 (MQ=255)
cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc > 1:930769/1‑93 (MQ=255)
cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc > 1:4051858/1‑93 (MQ=255)
cATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATc < 2:743020/93‑1 (MQ=255)
gATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACca > 2:309357/1‑93 (MQ=255)
gATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACca > 2:1440371/1‑93 (MQ=255)
gATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACca > 2:1470101/1‑93 (MQ=255)
aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag < 2:1097457/93‑1 (MQ=255)
aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag < 1:3433836/93‑1 (MQ=255)
aTAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcag > 1:3138708/1‑93 (MQ=255)
gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca > 1:2381411/1‑93 (MQ=255)
gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca > 2:2836740/1‑93 (MQ=255)
gCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtca > 1:3163420/1‑93 (MQ=255)
cACGAGAACTTTATCTGCCACAGGGTGAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt < 2:3793078/93‑1 (MQ=255)
cACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt < 2:2640658/93‑1 (MQ=255)
cACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt > 1:670810/1‑93 (MQ=255)
cACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACcagtcagt > 2:1443843/1‑93 (MQ=255)
aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc > 1:4130889/1‑93 (MQ=255)
aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc > 1:2733452/1‑93 (MQ=255)
aCGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCagtcagtc > 2:747339/1‑93 (MQ=255)
gagaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc > 2:3443750/1‑93 (MQ=255)
gagaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc > 2:198227/1‑93 (MQ=255)
gagaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAc > 2:4611333/1‑93 (MQ=255)
agaACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAcc < 2:503464/93‑1 (MQ=255)
aaCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgc > 2:464614/1‑93 (MQ=255)
aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc > 2:887939/1‑93 (MQ=255)
aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc > 2:3566711/1‑93 (MQ=255)
aCTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCAccgcc > 1:1482740/1‑93 (MQ=255)
tttATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACcgccgc > 2:2415845/1‑93 (MQ=255)
tttATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACcgccgc > 2:3361728/1‑93 (MQ=255)
tATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa > 2:2233904/1‑93 (MQ=255)
tATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGa < 1:1546810/93‑1 (MQ=255)
tCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACg > 2:4003282/1‑93 (MQ=255)
cTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGc < 1:2904778/93‑1 (MQ=255)
tGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCa > 1:1916096/1‑93 (MQ=255)
cacaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaa > 2:3302757/1‑93 (MQ=255)
acaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa > 1:1120805/1‑93 (MQ=255)
acaGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGACGCGACGCAGaca > 2:874321/1‑91 (MQ=255)
caGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaaa < 1:4648137/93‑1 (MQ=255)
gggTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATg < 1:3232737/93‑1 (MQ=255)
gggCCAAGAAAACCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATg < 2:2078705/93‑1 (MQ=255)
gTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAg < 2:2629612/93‑1 (MQ=255)
gTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAg < 1:2991439/93‑1 (MQ=255)
tCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgc > 1:987558/1‑93 (MQ=255)
aaGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgcgc > 1:3749858/1‑93 (MQ=255)
aaGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAgcgc > 1:1370688/1‑93 (MQ=255)
aGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg > 2:1517577/1‑93 (MQ=255)
ggAAAGCACCAAACAGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCgcgg > 1:511577/1‑93 (MQ=255)
gAAAGCACCAACCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCgcggc < 1:1713867/93‑1 (MQ=255)
gAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCgcggc < 1:1602207/93‑1 (MQ=255)
aaGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGTACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGcggcgg < 1:2515856/93‑1 (MQ=255)
aaGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGcggcgg > 2:3753321/1‑93 (MQ=255)
aGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCggcggc < 1:3575717/93‑1 (MQ=255)
aCCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaaa > 1:390113/1‑93 (MQ=255)
aCCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaaa > 2:675953/1‑93 (MQ=255)
ccAACCCGGGTGCTTTGATTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCCCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc < 2:557182/93‑1 (MQ=255)
ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc < 2:4329014/93‑1 (MQ=255)
ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc < 2:2815107/93‑1 (MQ=255)
ccAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc > 1:4475995/1‑93 (MQ=255)
ccAAACCGCGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc < 2:3459635/93‑1 (MQ=255)
cAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACg < 2:1776132/93‑1 (MQ=255)
aacccGGGTGCTTTGGTTCCAGCGGCGTGCCAAAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg < 1:439678/90‑1 (MQ=255)
aaaCGGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCCCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg < 2:59033/93‑1 (MQ=255)
aaaCCGGGTGCTTTGGTTCCAGCGGCGTCCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACgg > 1:3693415/1‑93 (MQ=255)
ccGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGa > 1:928043/1‑93 (MQ=255)
ccGGGAGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGTACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGAAAACGGCGa > 2:602729/1‑93 (MQ=255)
gggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCCGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc > 2:3740108/1‑93 (MQ=255)
gggTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc > 1:253397/1‑93 (MQ=255)
|
CCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCA > NC_000913/1990574‑1990753
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGG > NC_000913/1990571‑1990755
|
CCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTG < SRR4302535.711857/94‑1 (MQ=60)
CACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGC > SRR4302535.3019333/1‑94 (MQ=60)
CACCAGCTGTGAAAATGCTCGGTTACCAGCACCATGGCAATAGCCACGAGAACTTTAGCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGC < SRR4302535.2498667/94‑1 (MQ=60)
CTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGT > SRR4302535.1849358/1‑94 (MQ=60)
CTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGT < SRR4302535.855702/94‑1 (MQ=60)
TGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAATTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCC > SRR4302535.2529772/1‑94 (MQ=60)
GATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCA > SRR4302535.1816928/1‑94 (MQ=60)
ATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAG < SRR4302535.1849289/94‑1 (MQ=60)
TAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGC < SRR4302535.3109690/94‑1 (MQ=60)
AATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCG < SRR4302535.4447336/94‑1 (MQ=60)
TGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGC < SRR4302535.3552150/94‑1 (MQ=60)
GCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCG > SRR4302535.328986/1‑94 (MQ=60)
GGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCC > SRR4302535.810571/1‑94 (MQ=60)
TACCAGCACCATGGCGATAGCCACGAGAACTTTCTCTGCCACAGGGACAAGGAACGGACCAAACCGGAAGCTTTGGATCCAGCGGCGTGCCAGA > SRR4302535.4272648/1‑94 (MQ=53)
ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAA > SRR4302535.2099100/1‑94 (MQ=60)
ACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAA < SRR4302535.3091675/94‑1 (MQ=60)
CCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAA > SRR4302535.781516/1‑94 (MQ=60)
CAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAA < SRR4302535.3057351/94‑1 (MQ=60)
CAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAA < SRR4302535.2367782/94‑1 (MQ=60)
CAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCAGCGTGCCAGAAAA > SRR4302535.4599675/1‑94 (MQ=60)
AGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAAC > SRR4302535.4270679/1‑94 (MQ=60)
ACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGACAACCAT > SRR4302535.1754368/1‑94 (MQ=60)
ACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAT > SRR4302535.76985/1‑94 (MQ=60)
ACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAT < SRR4302535.291982/94‑1 (MQ=60)
ACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAT < SRR4302535.1505810/94‑1 (MQ=60)
ACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCAT > SRR4302535.3954991/1‑94 (MQ=60)
CCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATC > SRR4302535.937350/1‑94 (MQ=60)
CCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATC > SRR4302535.4079596/1‑94 (MQ=60)
GCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACA > SRR4302535.2409217/1‑94 (MQ=60)
GATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAG > SRR4302535.3160550/1‑94 (MQ=60)
ATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGT < SRR4302535.3457700/94‑1 (MQ=60)
AGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCA > SRR4302535.3185358/1‑94 (MQ=60)
AGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCA > SRR4302535.2398511/1‑94 (MQ=60)
CCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGT > SRR4302535.675493/1‑94 (MQ=60)
CACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTC > SRR4302535.2752960/1‑94 (MQ=60)
CACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTC > SRR4302535.4159153/1‑94 (MQ=60)
AACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCC > SRR4302535.1493343/1‑94 (MQ=60)
TATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGAC < SRR4302535.1557951/94‑1 (MQ=60)
CTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCA < SRR4302535.2925311/94‑1 (MQ=60)
CTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCA > SRR4302535.1929905/1‑94 (MQ=60)
CACAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAA > SRR4302535.1128797/1‑94 (MQ=60)
CAGGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAAT < SRR4302535.4679621/94‑1 (MQ=60)
GGGTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGA < SRR4302535.3255154/94‑1 (MQ=60)
GTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGC > SRR4302535.994574/1‑94 (MQ=60)
GTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGC > SRR4302535.2896659/1‑94 (MQ=60)
GTCAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGC < SRR4302535.3012415/94‑1 (MQ=60)
CAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGC > SRR4302535.1380480/1‑94 (MQ=60)
CAAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGC > SRR4302535.3775803/1‑94 (MQ=60)
AAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGCAAATGAGCGCG > SRR4302535.3725997/1‑94 (MQ=60)
AAGGAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCG > SRR4302535.543604/1‑94 (MQ=60)
AGGAAAGCACCAAACAGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGG > SRR4302535.515152/1‑94 (MQ=60)
GAAAGCACCAACCCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCG < SRR4302535.1726259/94‑1 (MQ=60)
GAAAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCG < SRR4302535.1613767/94‑1 (MQ=60)
AAGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGTACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGC < SRR4302535.2533991/94‑1 (MQ=60)
AGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCA < SRR4302535.4461104/94‑1 (MQ=60)
AGCACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCA < SRR4302535.3600506/94‑1 (MQ=60)
CACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAA > SRR4302535.392829/1‑94 (MQ=60)
ACCAAACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAC > SRR4302535.4506723/1‑94 (MQ=60)
CAAACCGGGTGCTTTGGTTCCAGCGGCGTCCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGG > SRR4302535.3718978/1‑94 (MQ=60)
AACCCGGGTGCTTTGGTTCCAGCGGCGTGCCAAAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGC < SRR4302535.442757/94‑1 (MQ=60)
AACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCG < SRR4302535.1985/94‑1 (MQ=60)
ACCGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGA > SRR4302535.934615/1‑94 (MQ=60)
CGGGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACC > SRR4302535.255147/1‑94 (MQ=60)
GGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAG < SRR4302535.1792455/94‑1 (MQ=60)
GGTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAG < SRR4302535.4117020/94‑1 (MQ=60)
GTGCTTTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGG < SRR4302535.1508144/94‑1 (MQ=60)
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CCACCAGCTGTGATAATGCTCGGTTACCAGCACCATGGCGATAGCCACGAGAACTTTATCTGCCACAGGGTCAAGGAAAGCACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGG > NC_000913/1990571‑1990755
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
