Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,007,020 |
T→C |
C241R (TGC→CGC) |
yedE → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,007,020 | 0 | T | C | 98.5%
| 393.8
/ ‑4.4
| 129 | C241R (TGC→CGC) | yedE | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (57/70); total (59/70) |
| Fisher's exact test for biased strand distribution p-value = 2.07e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 133 total aligned reads displayed.
GCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATC > NC_000913/2006930‑2007109
|
gcgcTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAGTGCTGGTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGc > 2:1601119/1‑93 (MQ=255)
gcgcTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGc < 2:412120/93‑1 (MQ=255)
gctgctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCtt > 2:2514038/1‑93 (MQ=255)
gctgctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCtt < 2:2162995/93‑1 (MQ=255)
gctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTAc > 2:2065190/1‑93 (MQ=255)
gctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTAc > 1:4551335/1‑93 (MQ=255)
gctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTAc < 1:3142808/93‑1 (MQ=255)
ctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACt > 2:4676898/1‑93 (MQ=255)
ctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACt < 1:3327950/93‑1 (MQ=255)
ctCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACt < 1:2330213/93‑1 (MQ=255)
cacaGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTc > 1:1290969/1‑93 (MQ=255)
caGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAg > 2:1789167/1‑93 (MQ=255)
caGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAg < 1:526406/93‑1 (MQ=255)
gctaTGAGCCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCg < 2:2133724/90‑1 (MQ=255)
gCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCg < 2:2879005/93‑1 (MQ=255)
gATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGtt > 2:4067716/1‑93 (MQ=255)
aTGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTc > 1:3836262/1‑93 (MQ=255)
tGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTcc < 2:2416597/93‑1 (MQ=255)
tGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTcc < 1:1882330/93‑1 (MQ=255)
aaccaaccCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCcgc > 2:1437399/1‑93 (MQ=255)
ccaaccCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGa > 2:4536287/1‑93 (MQ=255)
aaccCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGata < 1:1617033/93‑1 (MQ=255)
accCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGatat > 2:914845/1‑93 (MQ=255)
ccAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAtgt < 2:348098/93‑1 (MQ=255)
ccAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAtgt < 2:4281169/93‑1 (MQ=255)
cAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAtgtg < 2:1469406/93‑1 (MQ=255)
cAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAtgtg < 2:1932292/93‑1 (MQ=255)
cAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAtgtg < 2:1469403/93‑1 (MQ=255)
aaaCTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGCgg > 1:4326646/1‑93 (MQ=255)
aaCTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGa < 1:3370942/93‑1 (MQ=255)
aCTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGAt < 2:1622051/93‑1 (MQ=255)
aCTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGAt < 2:1240889/93‑1 (MQ=255)
aCTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGAt < 2:4396888/93‑1 (MQ=255)
cTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATc < 2:2782297/93‑1 (MQ=255)
cTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATc > 1:654729/1‑93 (MQ=255)
cTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATc < 1:1293326/93‑1 (MQ=255)
gggCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCAcc > 2:2417257/1‑93 (MQ=255)
gCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCgg < 1:3336568/93‑1 (MQ=255)
tGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGAc > 2:4635986/1‑93 (MQ=255)
gCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGt > 2:1986019/1‑93 (MQ=255)
cAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTa > 1:2710103/1‑93 (MQ=255)
cAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTa < 1:1569801/93‑1 (MQ=255)
aaTGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAc > 1:2578328/1‑93 (MQ=255)
aTGCTGTTTGGGGTCGGCTTTGGTTTAATGCTTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGCTCACAGGACGTAcc > 2:1219657/1‑93 (MQ=255)
aTGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAcc > 2:522867/1‑93 (MQ=255)
aTGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAcc > 2:3495822/1‑93 (MQ=255)
aTGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAcc > 1:3384628/1‑93 (MQ=255)
aTGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAcc > 1:3384627/1‑93 (MQ=255)
gCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATTACCGGACGTACCCa < 2:2862986/93‑1 (MQ=255)
gCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCa < 1:2199467/93‑1 (MQ=255)
gtGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCat < 1:2467726/92‑1 (MQ=255)
cTGTTTGTCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCat < 2:4216681/93‑1 (MQ=255)
tGTTTGGNGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCata > 1:2446784/1‑93 (MQ=255)
tGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCata < 1:2986182/93‑1 (MQ=255)
gTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCatat < 1:3083457/93‑1 (MQ=255)
tttGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATg > 2:2647670/1‑93 (MQ=255)
tttGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATg < 1:1683477/93‑1 (MQ=255)
tgtGGCGTCGTCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATg < 2:4297182/91‑1 (MQ=255)
tGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGc < 1:225919/93‑1 (MQ=255)
gTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGaaa > 2:885637/1‑93 (MQ=255)
gTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGaaa < 1:1903732/93‑1 (MQ=255)
tCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAg > 1:925927/1‑93 (MQ=255)
tCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAg < 2:2560300/93‑1 (MQ=255)
cGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGc > 2:2967399/1‑93 (MQ=255)
ggCTTTGGTTTACTGATTGAACGTGTGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCa > 1:4199284/1‑93 (MQ=255)
ggCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCa > 2:1783026/1‑93 (MQ=255)
gCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCaa > 1:1252274/1‑93 (MQ=255)
tttGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATc < 1:3973877/93‑1 (MQ=255)
ttGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCa > 1:2885766/1‑93 (MQ=255)
ggTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCAtt > 1:2601928/1‑93 (MQ=255)
gTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTa < 1:3995292/93‑1 (MQ=255)
tttACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTAt > 1:2967394/1‑93 (MQ=255)
tttACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTAt < 2:2987196/93‑1 (MQ=255)
ttACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATc < 1:2387575/93‑1 (MQ=255)
aCTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATCGCGAAAGCAATCATTATCgg > 2:1874108/1‑93 (MQ=255)
gATTGAACGTGCGCATATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTAt < 2:1584968/93‑1 (MQ=255)
gATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTAt > 1:674857/1‑93 (MQ=255)
aTTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATg < 2:385621/93‑1 (MQ=255)
aTTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATg < 2:2308409/93‑1 (MQ=255)
gAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCg < 2:1846320/93‑1 (MQ=255)
aaCGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCgg > 2:256852/1‑93 (MQ=255)
aaCGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCgg < 2:830601/93‑1 (MQ=255)
aaCGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCgg < 2:4449376/93‑1 (MQ=255)
aCGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCggg > 1:1416087/1‑92 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg > 2:1253464/1‑93 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg < 2:1990252/93‑1 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg > 1:1602902/1‑93 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg < 2:2177002/93‑1 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg < 1:2963695/93‑1 (MQ=255)
tGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAg > 1:4133815/1‑93 (MQ=255)
gcAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGc > 1:578559/1‑93 (MQ=255)
gcAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGc > 2:596914/1‑93 (MQ=255)
gcAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGc > 2:896683/1‑93 (MQ=255)
aaaTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCa < 2:3440127/93‑1 (MQ=255)
aaTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCAt < 2:3793591/93‑1 (MQ=255)
aaTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCAt < 2:3672482/93‑1 (MQ=255)
aaTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCAt > 1:3212334/1‑93 (MQ=255)
aTCTGCTTTACTTCAGCGTTCCCCGATATGTGCAACCCCGGACGTACCCATTTGGCGAAAGCAATGATTATGGGTATAGCGGTGAGTGCCATc > 2:4486090/1‑93 (MQ=255)
aTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATc < 2:835544/93‑1 (MQ=255)
aTCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATc < 2:1754310/93‑1 (MQ=255)
|
GCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATC > NC_000913/2006930‑2007109
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATCGGGA > NC_000913/2006927‑2007113
|
TGGGCGCTGCTCACAGCGATGAACCACCCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCC < SRR4302535.1622651/94‑1 (MQ=60)
TGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCC < SRR4302535.3341586/94‑1 (MQ=60)
TGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCC < SRR4302535.1750357/94‑1 (MQ=60)
GGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCG < SRR4302535.3000007/94‑1 (MQ=60)
GGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCG < SRR4302535.2118144/94‑1 (MQ=60)
TGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTAC > SRR4302535.4582440/1‑94 (MQ=60)
GCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACT < SRR4302535.3164673/94‑1 (MQ=60)
CTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTT < SRR4302535.3351103/94‑1 (MQ=60)
CTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTT < SRR4302535.2346880/94‑1 (MQ=60)
TCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTC > SRR4302535.1300172/1‑94 (MQ=60)
CAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGC < SRR4302535.530084/94‑1 (MQ=60)
AGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCG < SRR4302535.1522314/94‑1 (MQ=60)
GATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTC > SRR4302535.3862714/1‑94 (MQ=60)
TGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCG < SRR4302535.1895897/94‑1 (MQ=60)
AACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATAT < SRR4302535.1628683/94‑1 (MQ=60)
CCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGT > SRR4302535.2831232/1‑94 (MQ=60)
CAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGCGG > SRR4302535.4356233/1‑94 (MQ=60)
AACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGAT < SRR4302535.3394394/94‑1 (MQ=60)
ACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATC > SRR4302535.659299/1‑94 (MQ=60)
CTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCA < SRR4302535.1302542/94‑1 (MQ=60)
GGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACC < SRR4302535.2532163/94‑1 (MQ=60)
GCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGA < SRR4302535.3359804/94‑1 (MQ=60)
GGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGT < SRR4302535.2396027/94‑1 (MQ=60)
GCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTA > SRR4302535.2729474/1‑94 (MQ=60)
CAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAC < SRR4302535.1581133/94‑1 (MQ=60)
CAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTAC > SRR4302535.2596855/1‑94 (MQ=60)
CAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGAGGATCACCGGACGTAC < SRR4302535.3785258/94‑1 (MQ=60)
AATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACC > SRR4302535.3408178/1‑94 (MQ=60)
AATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACC > SRR4302535.3408179/1‑94 (MQ=60)
GCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCAT < SRR4302535.2215142/94‑1 (MQ=60)
GTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATA < SRR4302535.2485515/94‑1 (MQ=60)
CTGTTTGGNGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATA > SRR4302535.2464406/1‑94 (MQ=60)
TGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATAT < SRR4302535.3007126/94‑1 (MQ=60)
GTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATG < SRR4302535.3104943/94‑1 (MQ=60)
TTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGG < SRR4302535.1695670/94‑1 (MQ=60)
TGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCG < SRR4302535.227472/94‑1 (MQ=60)
GTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAG > SRR4302535.932488/1‑94 (MQ=60)
GTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAG < SRR4302535.1917433/94‑1 (MQ=60)
CGGCTTTGGTTTACTGATTGAACGTGTGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCA > SRR4302535.4228021/1‑94 (MQ=60)
GGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAA > SRR4302535.1261229/1‑94 (MQ=60)
GGCTTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAA < SRR4302535.1972714/94‑1 (MQ=60)
TTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCA < SRR4302535.4537768/94‑1 (MQ=60)
TTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCA > SRR4302535.2906183/1‑94 (MQ=60)
TTTGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCA < SRR4302535.4001021/94‑1 (MQ=60)
TGGTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATT > SRR4302535.2620607/1‑94 (MQ=60)
GTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTAT > SRR4302535.2988216/1‑94 (MQ=60)
GTTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTAT < SRR4302535.4022627/94‑1 (MQ=60)
TTTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATC > SRR4302535.643606/1‑94 (MQ=60)
TTACTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCG < SRR4302535.2404740/94‑1 (MQ=60)
CTGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTA < SRR4302535.4073609/94‑1 (MQ=60)
TGATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTAT > SRR4302535.679575/1‑94 (MQ=60)
GATTGAACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATG < SRR4302535.3365001/94‑1 (MQ=60)
AACGTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGG > SRR4302535.1426196/1‑94 (MQ=60)
GTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAG > SRR4302535.4162114/1‑94 (MQ=60)
GTGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAG > SRR4302535.1614466/1‑94 (MQ=60)
TGCGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGT < SRR4302535.2984495/94‑1 (MQ=60)
CTCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGC < SRR4302535.1694260/94‑1 (MQ=60)
CGCAAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGC > SRR4302535.582626/1‑94 (MQ=60)
AAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCAT > SRR4302535.3234581/1‑94 (MQ=60)
AAATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCAT < SRR4302535.3209576/94‑1 (MQ=60)
AATCCGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATC > SRR4302535.3002768/1‑94 (MQ=60)
CGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATCGGGA > SRR4302535.4375381/1‑94 (MQ=60)
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TGGGCGCTGCTCACAGCGATGAACCAACCCAAACTGGGGCTGGCAATGCTGTTTGGCGTCGGCTTTGGTTTACTGATTGAACGTGCGCAAATCTGCTTTACTTCAGCGTTCCGCGATATGTGGATCACCGGACGTACCCATATGGCGAAAGCAATCATTATCGGTATGGCGGTGAGTGCCATCGGGA > NC_000913/2006927‑2007113
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
