Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,011,752 |
T→C |
S168P (TCC→CCC) |
fliF → |
FliF |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,011,752 | 0 | T | C | 99.2%
| 357.2
/ ‑5.1
| 117 | S168P (TCC→CCC) | fliF | FliF |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (56/60); total (56/61) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 |
Only 100 of 121 total aligned reads displayed.
TCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCAG > NC_000913/2011662‑2011840
|
tcncGTACCATCGAAACTATCNNCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAccc < 1:2302048/93‑1 (MQ=255)
cGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCt < 2:3424677/93‑1 (MQ=255)
cGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCt < 1:3170664/93‑1 (MQ=255)
tACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTc > 1:1106437/1‑93 (MQ=255)
aCCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCt < 1:406808/93‑1 (MQ=255)
ccATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCtc > 1:1828666/1‑92 (MQ=255)
aTCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCa > 1:818780/1‑93 (MQ=255)
tCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAt > 1:831938/1‑93 (MQ=255)
tCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAt < 2:4310177/93‑1 (MQ=255)
tCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAt > 2:1963283/1‑93 (MQ=255)
cGAATCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATc < 2:347246/93‑1 (MQ=255)
gAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCg > 1:4300811/1‑93 (MQ=255)
aaaCTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCgg > 1:4207220/1‑93 (MQ=255)
aaCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGt > 2:3230393/1‑93 (MQ=255)
aaCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAGGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAGCCCCCTTCTGCATCGGt < 1:2202901/93‑1 (MQ=255)
aCTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTg < 1:744145/93‑1 (MQ=255)
cTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGa < 1:2455307/93‑1 (MQ=255)
aTCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACg < 1:135750/93‑1 (MQ=255)
aTCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACACCCTTCTGCATCGGTGACg > 2:2871216/1‑93 (MQ=255)
tCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACgg > 2:2447307/1‑93 (MQ=255)
gCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTaa > 1:1592289/1‑93 (MQ=255)
cccAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTaaa < 2:1955411/93‑1 (MQ=255)
ccagTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAt < 1:2591108/90‑1 (MQ=255)
ccagTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAt > 1:3368157/4‑93 (MQ=255)
ccagTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAt > 1:3021438/4‑93 (MQ=255)
gTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTg < 2:87572/93‑1 (MQ=255)
tAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGt < 1:373281/93‑1 (MQ=255)
tAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGt > 1:3248606/1‑93 (MQ=255)
aaaGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTa < 2:536821/93‑1 (MQ=255)
aaaGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTa > 1:1708546/1‑93 (MQ=255)
aaGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTAc > 1:3157439/1‑93 (MQ=255)
aaGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTAc > 2:4422734/1‑93 (MQ=255)
aGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTAcc < 2:3676272/93‑1 (MQ=255)
aGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTAcc > 1:2162593/1‑93 (MQ=255)
gggCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCg < 1:1064309/93‑1 (MQ=255)
gggCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCg > 1:1676216/1‑93 (MQ=255)
ggCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCgg < 2:2729477/93‑1 (MQ=255)
gcgcgcGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGc < 2:3085748/93‑1 (MQ=255)
gcgcgTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCcg < 2:3715254/93‑1 (MQ=255)
tACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCAc < 2:693077/93‑1 (MQ=255)
tACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCAc < 1:2618554/93‑1 (MQ=255)
tACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCAc < 2:4434860/93‑1 (MQ=255)
tACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCAc < 1:689352/93‑1 (MQ=255)
aCATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACt < 1:1173328/93‑1 (MQ=255)
aTCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCg < 2:1442504/93‑1 (MQ=255)
tCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGa > 2:1658635/1‑93 (MQ=255)
tCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGa > 2:3019800/1‑93 (MQ=255)
tCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGa > 2:3535499/1‑93 (MQ=255)
tGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATg > 1:1526103/1‑93 (MQ=255)
tGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATg > 2:148759/1‑93 (MQ=255)
ggCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGTTAAATCTGTTACCCGGCCGCGCACTCGATGa > 2:2507529/1‑93 (MQ=255)
ggCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGa < 1:4668781/93‑1 (MQ=255)
ggCAATCCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGa < 2:190821/93‑1 (MQ=255)
gCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGaa < 1:3225810/93‑1 (MQ=255)
cAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAg < 2:3364112/93‑1 (MQ=255)
cAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAg < 2:4231842/93‑1 (MQ=255)
aaTGCCGAAACCGTCTTTATTCGTCCGTGAACAAAACCCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAgg < 2:4437921/93‑1 (MQ=255)
aaTGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTGCCCGGCCGCGCACTCGATGAAgg < 1:379124/93‑1 (MQ=255)
aaTGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAgg > 1:1262834/1‑93 (MQ=255)
aaTGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAgg > 2:1482099/1‑93 (MQ=255)
tGCCGAAGCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCTGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGc < 1:2513079/93‑1 (MQ=255)
cGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCaaa < 1:3443268/93‑1 (MQ=255)
cGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCaaa < 2:2176230/93‑1 (MQ=255)
cGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCaaa > 2:3730152/1‑93 (MQ=255)
cGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCaaa > 1:2753486/1‑93 (MQ=255)
gAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAt > 1:2197309/1‑93 (MQ=255)
aaaCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAtt > 2:3721174/1‑93 (MQ=255)
aaaCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAtt > 1:1541531/1‑93 (MQ=255)
aaaCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAtt < 1:2561496/93‑1 (MQ=255)
aaCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTa < 2:236336/93‑1 (MQ=255)
aCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAg < 1:3334359/93‑1 (MQ=255)
aCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAg < 1:3736465/93‑1 (MQ=255)
gTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAgcgc > 1:2529889/1‑93 (MQ=255)
gTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAgcgc < 1:1830898/93‑1 (MQ=255)
gTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGCGCAAATTAgcgc > 1:560138/1‑93 (MQ=255)
tCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGcc > 2:3188082/1‑93 (MQ=255)
tCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGcc > 1:304887/1‑93 (MQ=255)
tCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGGGACGGTAAATCTGTTACACGGCCGCGCACTCGATGAAGGGCAAATTAGCGcc > 2:3310130/1‑93 (MQ=255)
ttttATTCGTCCGTGAACAAAAGCCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCa < 2:973492/92‑1 (MQ=255)
tttATTCGTCTGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCAt < 2:752312/93‑1 (MQ=255)
ttattaGTCCGTGAACAAAAACCCCCTTCCGCATCGGTGCCGGCAAATCTGTTACCCGGCCGCGCACTCGACGAACGGCAAATTCGCGCCagg > 2:1749609/1‑91 (MQ=255)
ttATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCAtt < 2:3029262/93‑1 (MQ=255)
ttATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCAtt > 1:3122080/1‑93 (MQ=255)
tATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATtg < 2:383657/93‑1 (MQ=255)
aTTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATtgt > 2:3620934/1‑93 (MQ=255)
aTTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATtgt > 1:3463702/1‑93 (MQ=255)
tCGTCCGTGAACAAAACCCCCCTCCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGc < 2:2411494/93‑1 (MQ=255)
cGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCa > 1:2701977/1‑93 (MQ=255)
gTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCAt > 1:603588/1‑93 (MQ=255)
gTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCAt > 1:4230153/1‑93 (MQ=255)
tCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATc < 1:864166/93‑1 (MQ=255)
tCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATc > 2:1158962/1‑93 (MQ=255)
cGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTg > 2:826480/1‑93 (MQ=255)
cGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTg > 2:83758/1‑93 (MQ=255)
tGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGt < 2:4505157/93‑1 (MQ=255)
gAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGtt < 2:2416385/93‑1 (MQ=255)
aaCAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGttt > 1:3855714/1‑93 (MQ=255)
aaCAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGttt > 2:711272/1‑93 (MQ=255)
cAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTcc < 1:96711/93‑1 (MQ=255)
aaaaaCCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCa < 2:4015593/93‑1 (MQ=255)
|
TCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCAG > NC_000913/2011662‑2011840
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCAGCGCCG > NC_000913/2011659‑2011845
|
CTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAC < SRR4302535.1164718/94‑1 (MQ=60)
CTTTCTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAAC < SRR4302535.2171453/94‑1 (MQ=60)
TCNCGTACCATCGAAACTATCNNCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCC < SRR4302535.2318520/94‑1 (MQ=60)
CTCGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCC < SRR4302535.1378911/94‑1 (MQ=60)
CGTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTT < SRR4302535.3192620/94‑1 (MQ=60)
GTACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTC > SRR4302535.1114341/1‑94 (MQ=60)
ACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTG < SRR4302535.409656/94‑1 (MQ=60)
ACCATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTC > SRR4302535.1841868/1‑94 (MQ=60)
CATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCA > SRR4302535.824526/1‑94 (MQ=60)
ATCGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCAT > SRR4302535.837768/1‑94 (MQ=60)
CGAAACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCG > SRR4302535.4330241/1‑94 (MQ=60)
GAAACTATCGGCCCGGTAAAAGGGGCGGGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGG < SRR4302535.2260649/94‑1 (MQ=60)
GAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGG > SRR4302535.4236013/1‑94 (MQ=60)
AACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAAGGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAGCCCCCTTCTGCATCGGTG < SRR4302535.2218600/94‑1 (MQ=60)
ACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGA < SRR4302535.749369/94‑1 (MQ=60)
ACTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGA > SRR4302535.4071056/1‑94 (MQ=60)
CTATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGAC < SRR4302535.2473009/94‑1 (MQ=60)
ATCGGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGG < SRR4302535.136697/94‑1 (MQ=60)
GGCCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAA > SRR4302535.1603777/1‑94 (MQ=60)
CCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAT > SRR4302535.3391593/1‑94 (MQ=60)
CCCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAAT > SRR4302535.3042597/1‑94 (MQ=60)
CCAGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATC < SRR4302535.2609713/94‑1 (MQ=60)
GTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGT > SRR4302535.3271173/1‑94 (MQ=60)
GTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGT > SRR4302535.3233290/1‑94 (MQ=60)
TAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTT < SRR4302535.375865/94‑1 (MQ=60)
AAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTA > SRR4302535.1720899/1‑94 (MQ=60)
AAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTAC > SRR4302535.3179359/1‑94 (MQ=60)
AAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACC > SRR4302535.2178110/1‑94 (MQ=60)
GGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCG > SRR4302535.1688354/1‑94 (MQ=60)
GGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGG < SRR4302535.1071882/94‑1 (MQ=60)
GTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCAC < SRR4302535.2779487/94‑1 (MQ=60)
TACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACT < SRR4302535.4663318/94‑1 (MQ=60)
TACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACT < SRR4302535.2637327/94‑1 (MQ=60)
TACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACT < SRR4302535.694181/94‑1 (MQ=60)
ACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTC < SRR4302535.1181705/94‑1 (MQ=60)
CTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATG > SRR4302535.1537099/1‑94 (MQ=60)
TGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGA < SRR4302535.2582193/94‑1 (MQ=60)
GGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAA < SRR4302535.4700324/94‑1 (MQ=60)
GCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAG < SRR4302535.3248174/94‑1 (MQ=60)
CAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGG < SRR4302535.1792759/94‑1 (MQ=60)
CAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGG > SRR4302535.1271870/1‑94 (MQ=60)
AATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTGCCCGGCCGCGCACTCGATGAAGGG < SRR4302535.381749/94‑1 (MQ=60)
TGCCGAAGCCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCTGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCA < SRR4302535.2531200/94‑1 (MQ=60)
CCGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAA > SRR4302535.2773108/1‑94 (MQ=60)
CGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAT < SRR4302535.3467213/94‑1 (MQ=60)
CGAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAAT > SRR4302535.2212970/1‑94 (MQ=60)
GAAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATT > SRR4302535.1552645/1‑94 (MQ=60)
AAACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTA < SRR4302535.2579938/94‑1 (MQ=60)
ACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGC < SRR4302535.3762326/94‑1 (MQ=60)
ACCGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGC < SRR4302535.3357583/94‑1 (MQ=60)
CGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGC > SRR4302535.2548119/1‑94 (MQ=60)
CGTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGCGCAAATTAGCGC > SRR4302535.564057/1‑94 (MQ=60)
GTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCC < SRR4302535.1844112/94‑1 (MQ=60)
GTCTTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCC > SRR4302535.307002/1‑94 (MQ=60)
TTTATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATT > SRR4302535.3143823/1‑94 (MQ=60)
TATTCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGT > SRR4302535.3487777/1‑94 (MQ=60)
TCGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCA > SRR4302535.2721281/1‑94 (MQ=60)
CGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCAT > SRR4302535.4259101/1‑94 (MQ=60)
CGTCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCAT > SRR4302535.607811/1‑94 (MQ=60)
TCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCT < SRR4302535.870273/94‑1 (MQ=60)
TCCGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCT < SRR4302535.3479499/94‑1 (MQ=60)
CGTGAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGG > SRR4302535.780689/1‑94 (MQ=60)
GAACAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTT > SRR4302535.3882264/1‑94 (MQ=60)
CAAAAACCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCA < SRR4302535.97394/94‑1 (MQ=60)
CCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCAGCGCCG > SRR4302535.2800495/1‑94 (MQ=60)
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CTTTCTCGTACCATCGAAACTATCGGCCCGGTAAAAGGGGCGCGCGTACATCTGGCAATGCCGAAACCGTCTTTATTCGTCCGTGAACAAAAATCCCCTTCTGCATCGGTGACGGTAAATCTGTTACCCGGCCGCGCACTCGATGAAGGGCAAATTAGCGCCATTGTGCATCTGGTTTCCAGCGCCG > NC_000913/2011659‑2011845
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
