Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1696 |
279.3 |
15874187 |
97.8% |
15524954 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,013,946 |
G→A |
Q26Q (CAG→CAA) |
fliH → |
FliH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,013,946 | 0 | G | A | 100.0%
| 883.4
/ NA
| 244 | Q26Q (CAG→CAA) | fliH | FliH |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (129/115); total (129/115) |
Only 100 of 251 total aligned reads displayed.
CGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013858‑2014035
|
gagaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCaga < 1:1627912/93‑1 (MQ=255)
agaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCagag < 2:5292490/93‑1 (MQ=255)
gaTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGt > 2:1702410/1‑93 (MQ=255)
aTGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGtt > 2:2109740/1‑93 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt < 2:795875/93‑1 (MQ=255)
tGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGttt < 2:3402485/93‑1 (MQ=255)
ggTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGCGTTtg > 2:3339188/1‑93 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt > 1:5674839/1‑93 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt < 1:6932679/93‑1 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt > 2:225219/1‑93 (MQ=255)
gTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTtgt < 1:101453/93‑1 (MQ=255)
aaTTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGAAGCCGGACGATCTCGCGCCACAACAAGCAGAGTTTGTGc > 2:5523458/1‑93 (MQ=255)
aTTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGcc > 1:2267185/1‑93 (MQ=255)
ttGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGccc > 1:1483875/1‑93 (MQ=255)
tGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCa < 1:4473622/93‑1 (MQ=255)
gCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATa > 2:2417790/1‑93 (MQ=255)
gCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATa < 2:3154025/93‑1 (MQ=255)
gCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATa < 1:2185906/93‑1 (MQ=255)
cAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAg < 2:2816771/93‑1 (MQ=255)
aGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGt < 1:2534752/93‑1 (MQ=255)
gcggcgAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTc > 1:782576/1‑93 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCTACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg < 2:6929024/93‑1 (MQ=255)
aGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCg > 2:6042836/1‑93 (MQ=255)
ggATACCTATGTCTGATAATCTGCCGTGGAAAGCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCgg < 1:3235888/93‑1 (MQ=255)
ggATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCgg > 1:7693477/1‑93 (MQ=255)
gATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGga > 1:2417003/1‑93 (MQ=255)
aTACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaa < 2:5954934/93‑1 (MQ=255)
aTACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaa < 1:6696999/93‑1 (MQ=255)
tACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGgaag > 2:2846887/1‑93 (MQ=255)
cTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGaaa < 1:3329520/93‑1 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 1:5072320/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 2:7156425/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc > 2:1776699/1‑93 (MQ=255)
tATGTCTGATAATCTGCCGTGGAAAACCTGGACGACGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAc < 2:7292712/93‑1 (MQ=255)
aTGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAcc < 1:2500117/93‑1 (MQ=255)
aTGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAcc > 2:4628879/1‑93 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca < 2:1557447/93‑1 (MQ=255)
tGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACca > 2:4449488/1‑93 (MQ=255)
cTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatca < 2:4767730/93‑1 (MQ=255)
cTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatca < 1:425509/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat < 1:6017732/93‑1 (MQ=255)
tGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACcatcat < 1:5263671/93‑1 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt < 1:7166652/93‑1 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt > 1:3679887/1‑93 (MQ=255)
gATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAtt > 2:6576965/1‑93 (MQ=255)
tattCTGCCGTGGAAACCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGa < 2:7010954/90‑1 (MQ=255)
tAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGa > 2:6208393/1‑93 (MQ=255)
acgcTGCCGGAGAACCCCTGATCGCCGGACGATCTCGCGCAACCACAAGCAGATTTTGCGCCCATAGTCGTGCCGGAAGAAACCATCATTTaa < 2:687295/90‑1 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa > 1:1122799/1‑93 (MQ=255)
aaTCTGCCGTGGAAAACCTGGACGCCCGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGaa > 2:4730482/1‑93 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga < 2:3971687/93‑1 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga > 2:1857467/1‑93 (MQ=255)
tCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAaga > 1:3219469/1‑93 (MQ=255)
cTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAagag > 2:7628482/1‑93 (MQ=255)
cTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAagag > 2:4976955/1‑93 (MQ=255)
gCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGc > 2:3665422/1‑93 (MQ=255)
gTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGa > 1:5437695/1‑93 (MQ=255)
gTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGa > 1:6432658/1‑93 (MQ=255)
gTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGa < 1:5535313/93‑1 (MQ=255)
tGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGaa > 2:1954736/1‑93 (MQ=255)
ggAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAc < 2:6266309/93‑1 (MQ=255)
gAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGGTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAcc > 2:5817578/1‑93 (MQ=255)
aaaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAccc > 1:7324063/1‑93 (MQ=255)
aaaaCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAccc < 2:2511736/93‑1 (MQ=255)
aCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGc > 1:6615064/1‑93 (MQ=255)
aCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGc > 1:506480/1‑93 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAag < 2:5220496/77‑1 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAag > 1:5220498/1‑77 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCt > 1:4674489/1‑93 (MQ=255)
cTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCt > 1:2767839/1‑93 (MQ=255)
ggACGCCGGACGATCTCGCGCCCCCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTg < 2:3900731/93‑1 (MQ=255)
gACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGa > 1:6394224/1‑93 (MQ=255)
gACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGa < 2:4652002/93‑1 (MQ=255)
cGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagc < 2:6726035/93‑1 (MQ=255)
cGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGagc < 2:1176183/93‑1 (MQ=255)
ggACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAgcagca > 1:7444592/1‑93 (MQ=255)
gACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCaa < 2:7423481/93‑1 (MQ=255)
gACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCaa > 1:7256709/1‑93 (MQ=255)
aCGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAAc < 2:194016/93‑1 (MQ=255)
cGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACt < 1:7482326/93‑1 (MQ=255)
cGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACt > 2:106058/1‑93 (MQ=255)
gATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTg > 1:4027584/1‑93 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg > 1:5779315/1‑93 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg < 2:3000417/93‑1 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg > 2:1133789/1‑93 (MQ=255)
aTCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTgg > 1:1797883/1‑93 (MQ=255)
tctcGCCCCACCACAAGCAGAGTTTGTGCCCAGAGGCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGgc < 1:3423903/93‑1 (MQ=255)
tcGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGgcgc > 2:4484002/1‑93 (MQ=255)
gcgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCaa < 1:1257661/93‑1 (MQ=255)
cgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAc < 2:5023303/93‑1 (MQ=255)
cgcCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAc > 1:5973276/1‑93 (MQ=255)
ccaccaCAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTg > 2:7861408/1‑93 (MQ=255)
caccacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGc > 2:94842/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 2:5154149/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 1:929587/1‑93 (MQ=255)
accacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCa > 1:3912425/1‑93 (MQ=255)
ccacAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaa < 1:4282439/93‑1 (MQ=255)
cacaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaaa < 2:4153844/93‑1 (MQ=255)
cacaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaaa < 2:1328335/93‑1 (MQ=255)
cacaAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCaaa < 1:3997098/93‑1 (MQ=255)
|
CGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT > NC_000913/2013858‑2014035
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > NC_000913/2013854‑2014039
|
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG > SRR4302543.6909418/1‑94 (MQ=60)
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG < SRR4302543.5797692/94‑1 (MQ=60)
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG < SRR4302543.3465881/94‑1 (MQ=60)
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG > SRR4302543.2487571/1‑94 (MQ=60)
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAG > SRR4302543.48083/1‑94 (MQ=60)
TGACGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGC > SRR4302543.5504581/1‑94 (MQ=60)
CGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGA > SRR4302543.3429176/1‑94 (MQ=60)
GAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAG < SRR4302543.1642411/94‑1 (MQ=60)
AGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGT > SRR4302543.7349338/1‑94 (MQ=60)
GATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTT > SRR4302543.221807/1‑94 (MQ=60)
TGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTG < SRR4302543.325021/94‑1 (MQ=60)
GGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGT > SRR4302543.6960781/1‑94 (MQ=60)
GGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGT > SRR4302543.5726642/1‑94 (MQ=60)
GTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTG < SRR4302543.102392/94‑1 (MQ=60)
GTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTG < SRR4302543.6997893/94‑1 (MQ=60)
GTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTC > SRR4302543.2357441/1‑94 (MQ=60)
TAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGC > SRR4302543.1523775/1‑94 (MQ=60)
AATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCC > SRR4302543.2287887/1‑94 (MQ=60)
ATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCC > SRR4302543.1497238/1‑94 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT > SRR4302543.5325014/1‑94 (MQ=60)
TGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCAT < SRR4302543.4514220/94‑1 (MQ=60)
GCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAG < SRR4302543.990363/94‑1 (MQ=60)
GCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAG < SRR4302543.2205510/94‑1 (MQ=60)
GCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAG < SRR4302543.7815346/94‑1 (MQ=60)
CAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGT < SRR4302543.5221914/94‑1 (MQ=60)
AGCGGCGCAGATACCGATGTCTGGTAATCTGCCGTGGAAAACCGGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC < SRR4302543.2557839/94‑1 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC > SRR4302543.789463/1‑94 (MQ=60)
AGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTC < SRR4302543.2557840/94‑1 (MQ=60)
CGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCC < SRR4302543.449074/94‑1 (MQ=60)
CGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCACCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCC > SRR4302543.1502699/1‑94 (MQ=60)
AGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGG > SRR4302543.7766309/1‑94 (MQ=60)
GGATACCTATGTCTGATAATCTGCCGTGGAAAGCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGA < SRR4302543.3265157/94‑1 (MQ=60)
GGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGA > SRR4302543.2438832/1‑94 (MQ=60)
GATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAA > SRR4302543.6623515/1‑94 (MQ=60)
ATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAG < SRR4302543.6760206/94‑1 (MQ=60)
TACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGA > SRR4302543.402833/1‑94 (MQ=60)
TACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGA < SRR4302543.7305128/94‑1 (MQ=60)
TACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGA > SRR4302543.597666/1‑94 (MQ=60)
ACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAA < SRR4302543.1762373/94‑1 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAACCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC < SRR4302543.3359540/94‑1 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC > SRR4302543.5118355/1‑94 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC < SRR4302543.3359541/94‑1 (MQ=60)
CTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAAC < SRR4302543.2708369/94‑1 (MQ=60)
ATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCA < SRR4302543.2522808/94‑1 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGTGTTTGTGCCCATGGTCGAGCCGGAAGCAACCAT < SRR4302543.7108486/94‑1 (MQ=60)
TGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCAT > SRR4302543.2524605/1‑94 (MQ=60)
GTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATC > SRR4302543.3338513/1‑94 (MQ=60)
GTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATC < SRR4302543.5903662/94‑1 (MQ=60)
TCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTTCCCATAGTCGAGCCGGAAGAAACCATCA < SRR4302543.923859/94‑1 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT < SRR4302543.429495/94‑1 (MQ=60)
CTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCAT < SRR4302543.4624724/94‑1 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT > SRR4302543.3712218/1‑94 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT < SRR4302543.5311157/94‑1 (MQ=60)
TGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATT < SRR4302543.6073437/94‑1 (MQ=60)
GATAATCTGCCGTGGAAAGCCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTG < SRR4302543.6748847/94‑1 (MQ=60)
GATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTG < SRR4302543.7236261/94‑1 (MQ=60)
TAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAA > SRR4302543.6845343/1‑94 (MQ=60)
TAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAA > SRR4302543.1132987/1‑94 (MQ=60)
AATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAG < SRR4302543.5013800/94‑1 (MQ=60)
ATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGA > SRR4302543.3248558/1‑94 (MQ=60)
GCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCT > SRR4302543.5686378/1‑94 (MQ=60)
CCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTG < SRR4302543.6052579/94‑1 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA > SRR4302543.5817009/1‑94 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA > SRR4302543.6493271/1‑94 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA > SRR4302543.5487074/1‑94 (MQ=60)
CGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGA < SRR4302543.6487635/94‑1 (MQ=60)
GTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAA < SRR4302543.5585616/94‑1 (MQ=60)
TGGAAAACCTGGACACCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAAC > SRR4302543.5276815/1‑94 (MQ=60)
GGAAAACCTGGACGCCGGGCGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGACGAAACCATAATTGAAGAGGGTGAACC > SRR4302543.3216583/1‑94 (MQ=60)
GAAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCC > SRR4302543.7394592/1‑94 (MQ=60)
AAAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCA < SRR4302543.5344285/94‑1 (MQ=60)
AAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAG < SRR4302543.4277547/94‑1 (MQ=60)
AAACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAG < SRR4302543.1466734/94‑1 (MQ=60)
AACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGC > SRR4302543.6677432/1‑94 (MQ=60)
AACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGC > SRR4302543.511185/1‑94 (MQ=60)
AACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGACGCTGCACCCAGC > SRR4302543.511186/1‑94 (MQ=60)
ACCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCC > SRR4302543.7546916/1‑94 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAagagtggagatcgga > SRR4302543.5267517/1‑79 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAagagtggagatcgga > SRR4302543.5267516/1‑79 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCT > SRR4302543.4717107/1‑94 (MQ=60)
CCTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCT > SRR4302543.2793024/1‑94 (MQ=60)
CTGGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTT < SRR4302543.4409739/94‑1 (MQ=60)
GGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGA > SRR4302543.6454418/1‑94 (MQ=60)
GGACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGA < SRR4302543.7306622/94‑1 (MQ=60)
GACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAG < SRR4302543.3618050/94‑1 (MQ=60)
ACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGC > SRR4302543.6668971/1‑94 (MQ=60)
ACGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGC > SRR4302543.4043332/1‑94 (MQ=60)
CGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA < SRR4302543.2852367/94‑1 (MQ=60)
CGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA < SRR4302543.6400474/94‑1 (MQ=60)
CGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA > SRR4302543.2382850/1‑94 (MQ=60)
CGCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCA < SRR4302543.760718/94‑1 (MQ=60)
GCCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCACAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAG < SRR4302543.5712289/94‑1 (MQ=60)
CCGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCCTTGAAGAGGCTGAACCCAGCCTTGAGCAGC > SRR4302543.4001914/1‑94 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAcgc > SRR4302543.7515941/1‑91 (MQ=60)
CGGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCA > SRR4302543.7515939/1‑94 (MQ=60)
GGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAA > SRR4302543.7326859/1‑94 (MQ=60)
GGACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAA > SRR4302543.1901678/1‑94 (MQ=60)
ACGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACT < SRR4302543.7479749/94‑1 (MQ=60)
CGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTG < SRR4302543.7553944/94‑1 (MQ=60)
CGATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTG > SRR4302543.4063580/1‑94 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG > SRR4302543.1813985/1‑94 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG < SRR4302543.6219997/94‑1 (MQ=60)
GATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGG > SRR4302543.5831914/1‑94 (MQ=60)
ATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGC > SRR4302543.4182523/1‑94 (MQ=60)
ATCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGC > SRR4302543.7426819/1‑94 (MQ=60)
TCTCGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCG < SRR4302543.3454539/94‑1 (MQ=60)
TCTCGCCCCACCACAAGCAGAGTTTGTGCCCAGAGGCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCG < SRR4302543.3454538/94‑1 (MQ=60)
CGCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAA < SRR4302543.7762306/94‑1 (MQ=60)
GCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAC < SRR4302543.1250170/94‑1 (MQ=60)
GCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAC < SRR4302543.1268918/94‑1 (MQ=60)
GCGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAC > SRR4302543.6027991/1‑94 (MQ=60)
GCGCCACCACAAGCAGAGTTTGTGCCCAGTGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAAC < SRR4302543.1250169/94‑1 (MQ=60)
CGCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACT < SRR4302543.3748351/94‑1 (MQ=60)
GCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTG < SRR4302543.881299/94‑1 (MQ=60)
GCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTG < SRR4302543.1092174/94‑1 (MQ=60)
GCCACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTG > SRR4302543.2440697/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302543.5013163/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302543.4294063/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302543.3946961/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302543.937711/1‑94 (MQ=60)
CACCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCA > SRR4302543.1814982/1‑94 (MQ=60)
CCACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAA < SRR4302543.4321363/94‑1 (MQ=60)
CACAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAAT < SRR4302543.4032725/94‑1 (MQ=60)
CAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGC > SRR4302543.4546660/1‑94 (MQ=60)
CAAGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGC > SRR4302543.2202796/1‑94 (MQ=60)
AGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > SRR4302543.67841/1‑94 (MQ=60)
AGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > SRR4302543.7945414/1‑94 (MQ=60)
|
CTGGCGAGATGGTAATTGGCAGCGGCGAGGATACCTATGTCTGATAATCTGCCGTGGAAAACCTGGACGCCGGACGATCTCGCGCCACCACAGGCAGAGTTTGTGCCCATAGTCGAGCCGGAAGAAACCATCATTGAAGAGGCTGAACCCAGCCTTGAGCAGCAACTGGCGCAACTGCAAATGCAG > NC_000913/2013854‑2014039
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
