Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,034,882 |
T→C |
G431G (GGA→GGG) |
yedV ← |
putative 2‑component sensor protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,034,882 | 0 | T | C | 94.8%
| 322.0
/ 6.7
| 115 | G431G (GGA→GGG) | yedV | putative 2‑component sensor protein |
| Reads supporting (aligned to +/- strand): ref base T (4/2); new base C (56/53); total (60/55) |
| Fisher's exact test for biased strand distribution p-value = 6.81e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 |
Only 100 of 121 total aligned reads displayed.
TTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCT > NC_000913/2034792‑2034971
|
tttATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTccc > 1:911595/1‑93 (MQ=255)
tttATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTccc > 2:1725938/1‑93 (MQ=255)
ttATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTcccc < 1:2990931/93‑1 (MQ=255)
tATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCcccc < 1:1323931/93‑1 (MQ=255)
aTGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTcccccc > 2:957678/1‑93 (MQ=255)
aTGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTcccccc < 1:3831850/93‑1 (MQ=255)
tGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCa < 2:784373/93‑1 (MQ=255)
tGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCa < 2:4663742/93‑1 (MQ=255)
gCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATg > 1:1329036/1‑93 (MQ=255)
gTACTGAATCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCa > 2:4554681/1‑93 (MQ=255)
gTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCa > 1:4481533/1‑93 (MQ=255)
gTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCa < 2:1989077/93‑1 (MQ=255)
tACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCaa < 1:550023/93‑1 (MQ=255)
tACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCaa > 2:2376983/1‑93 (MQ=255)
aCTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAAt > 2:1808133/1‑93 (MQ=255)
cTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAAtt < 1:2016444/93‑1 (MQ=255)
tGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTc > 1:2638519/1‑93 (MQ=255)
tGAAGCCATATGTTTATGTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGGGATCCGTAGCGCCCGCCCCATGCAAtgc < 2:47598/93‑3 (MQ=255)
aaGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCgg < 1:3644776/93‑1 (MQ=255)
aGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCgga > 2:3848341/1‑92 (MQ=255)
cccTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCaa < 1:800802/93‑1 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATGCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATc < 1:141606/93‑1 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATc < 2:4637696/93‑1 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATc > 1:604412/1‑93 (MQ=255)
cTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATc < 2:780555/93‑1 (MQ=255)
tATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCg > 2:1951098/1‑93 (MQ=255)
tATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCg < 1:1043748/93‑1 (MQ=255)
aTGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGc < 1:2955420/93‑1 (MQ=255)
tGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCt > 2:2774479/1‑93 (MQ=255)
ttAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCttt < 2:4083611/93‑1 (MQ=255)
ttAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCttt > 2:4666297/1‑93 (MQ=255)
tAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTg > 1:3732189/1‑93 (MQ=255)
aaTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGa > 1:3907424/1‑93 (MQ=255)
aaTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGa > 2:3138629/1‑93 (MQ=255)
aTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGAc < 1:493495/93‑1 (MQ=255)
aTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGAc > 1:3143023/1‑93 (MQ=255)
aTTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGAc < 1:3367976/93‑1 (MQ=255)
ttCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTa < 2:2097695/93‑1 (MQ=255)
tCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaa > 1:2518584/1‑93 (MQ=255)
cTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaaa < 2:2094318/93‑1 (MQ=255)
tttGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaaag > 1:4688010/1‑93 (MQ=255)
ttGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaaaga < 2:2171542/93‑1 (MQ=255)
ttGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaaaga < 2:4137282/93‑1 (MQ=255)
gCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTaaagaaa < 1:4271911/93‑1 (MQ=255)
ggTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAgg < 1:4475953/93‑1 (MQ=255)
gTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGc > 1:3730610/1‑93 (MQ=255)
gTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGc > 2:4215225/1‑93 (MQ=255)
aaCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCt > 2:3436728/1‑93 (MQ=255)
aaCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCt > 2:4038545/1‑93 (MQ=255)
aaCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCt > 1:1904228/1‑93 (MQ=255)
aCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTa < 2:3436385/93‑1 (MQ=255)
aCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTa < 1:1621676/93‑1 (MQ=255)
aCGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTa < 2:1852556/93‑1 (MQ=255)
gTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGt > 1:1775858/1‑93 (MQ=255)
gTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGt < 1:208411/93‑1 (MQ=255)
aTCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTccc > 2:3588817/1‑93 (MQ=255)
aTCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTccc > 1:347501/1‑93 (MQ=255)
tCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCt > 1:3568876/1‑93 (MQ=255)
tCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCt < 2:1952576/93‑1 (MQ=255)
tCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCt < 2:1709132/93‑1 (MQ=255)
ggAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGAc < 1:3974713/93‑1 (MQ=255)
ggAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGAc > 2:3247994/1‑93 (MQ=255)
ggAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGAc < 1:2383865/93‑1 (MQ=255)
gAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGAcc > 2:4263624/1‑93 (MQ=255)
aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCt > 1:2791574/1‑93 (MQ=255)
aaCACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCt < 1:717501/93‑1 (MQ=255)
aaCACATTATGCTGATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCt < 2:542292/93‑1 (MQ=255)
acacATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTa > 1:1365263/1‑93 (MQ=255)
acacATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTa < 1:1818524/93‑1 (MQ=255)
cacaTTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTAc < 1:2041541/93‑1 (MQ=255)
cacaTTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTAc > 2:4242786/1‑93 (MQ=255)
aTTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGCCCTACGGa > 1:1585611/1‑93 (MQ=255)
tATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAAt > 1:1157814/1‑93 (MQ=255)
tATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAAt < 1:2297650/93‑1 (MQ=255)
gCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAc < 1:1265740/93‑1 (MQ=255)
gCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAc > 2:1700740/1‑93 (MQ=255)
cTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAcg > 1:1369976/1‑93 (MQ=255)
ttATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAcgc > 1:863227/1‑93 (MQ=255)
ttATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAcgc < 1:1865609/93‑1 (MQ=255)
tATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGAcgcg > 2:1502856/1‑93 (MQ=255)
aTTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGa > 1:795767/1‑93 (MQ=255)
aTTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGa < 2:62444/93‑1 (MQ=255)
ttGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGaa > 1:1882251/1‑93 (MQ=255)
aTAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTAtc > 2:2197406/1‑93 (MQ=255)
aTAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTAtc < 1:1999367/93‑1 (MQ=255)
tAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTAtct > 1:1950257/1‑93 (MQ=255)
tAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTAtct > 2:180430/1‑93 (MQ=255)
aGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTAtctc < 2:1433326/93‑1 (MQ=255)
gTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTcc > 1:4394023/1‑93 (MQ=255)
gATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTcccc > 1:418821/1‑93 (MQ=255)
aCGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGcc > 1:4047837/1‑93 (MQ=255)
aCGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGcc > 1:4348218/1‑93 (MQ=255)
gTAGCCCTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCaa < 1:261991/93‑1 (MQ=255)
gTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCaa > 2:1512690/1‑93 (MQ=255)
aGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCaaaa < 1:3947070/93‑1 (MQ=255)
aGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCaaaa < 2:72886/93‑1 (MQ=255)
aCTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCt > 1:4641208/1‑93 (MQ=255)
aCTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCACAATCt > 2:1513942/1‑93 (MQ=255)
aCTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCt > 1:391816/1‑93 (MQ=255)
aCTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCt > 1:2242185/1‑93 (MQ=255)
|
TTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCT > NC_000913/2034792‑2034971
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGG > NC_000913/2034790‑2034975
|
AATTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCC < SRR4302535.1509469/94‑1 (MQ=60)
ATTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCC > SRR4302535.918077/1‑94 (MQ=60)
TTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCC < SRR4302535.3011904/94‑1 (MQ=60)
TATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCC < SRR4302535.1333378/94‑1 (MQ=60)
ATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCA < SRR4302535.3858272/94‑1 (MQ=60)
GGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATG > SRR4302535.1338517/1‑94 (MQ=60)
GGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATG < SRR4302535.1361903/94‑1 (MQ=60)
CGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCA > SRR4302535.4512293/1‑94 (MQ=60)
GTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAA < SRR4302535.1960507/94‑1 (MQ=60)
TACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAAT < SRR4302535.553871/94‑1 (MQ=60)
CTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTC > SRR4302535.2657419/1‑94 (MQ=60)
CTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTC < SRR4302535.2030970/94‑1 (MQ=60)
AAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGC < SRR4302535.3670019/94‑1 (MQ=60)
CCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAAT > SRR4302535.3736894/1‑94 (MQ=60)
CCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAAT < SRR4302535.806430/94‑1 (MQ=60)
CCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATC > SRR4302535.608641/1‑94 (MQ=60)
CTATGTTAATTTCTTTGCGGTAACGTAATGCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCG < SRR4302535.142598/94‑1 (MQ=60)
TATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGC < SRR4302535.1707097/94‑1 (MQ=60)
TATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGC < SRR4302535.1051146/94‑1 (MQ=60)
ATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCT > SRR4302535.3945581/1‑94 (MQ=60)
ATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCT < SRR4302535.2976175/94‑1 (MQ=60)
TTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTG > SRR4302535.3758031/1‑94 (MQ=60)
TAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGA > SRR4302535.3934193/1‑94 (MQ=60)
AATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGAC > SRR4302535.3164889/1‑94 (MQ=60)
ATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACT < SRR4302535.496954/94‑1 (MQ=60)
ATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACT < SRR4302535.3391411/94‑1 (MQ=60)
TTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAA > SRR4302535.2536737/1‑94 (MQ=60)
TTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAA < SRR4302535.4561106/94‑1 (MQ=60)
CTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAG > SRR4302535.4719877/1‑94 (MQ=60)
TTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGA < SRR4302535.629209/94‑1 (MQ=60)
GCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAG < SRR4302535.4301156/94‑1 (MQ=60)
GGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGC > SRR4302535.3756443/1‑94 (MQ=60)
GGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGC < SRR4302535.4506681/94‑1 (MQ=60)
TAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCT > SRR4302535.1917936/1‑94 (MQ=60)
ACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAG < SRR4302535.1633382/94‑1 (MQ=60)
CGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGT > SRR4302535.1788717/1‑94 (MQ=60)
GTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTC < SRR4302535.209842/94‑1 (MQ=60)
AATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCC > SRR4302535.349893/1‑94 (MQ=60)
ATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCT > SRR4302535.3593626/1‑94 (MQ=60)
CGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACGCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGAC < SRR4302535.2563019/94‑1 (MQ=60)
GGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACC < SRR4302535.2400983/94‑1 (MQ=60)
GGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACC < SRR4302535.4001864/94‑1 (MQ=60)
GAACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCT > SRR4302535.2811440/1‑94 (MQ=60)
AACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTA > SRR4302535.1375026/1‑94 (MQ=60)
AACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTA < SRR4302535.722541/94‑1 (MQ=60)
ACACATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTAC < SRR4302535.1831667/94‑1 (MQ=60)
CACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACG < SRR4302535.2056246/94‑1 (MQ=60)
CATTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGCCCTACGGA > SRR4302535.1597051/1‑94 (MQ=60)
TTATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAAT > SRR4302535.1166092/1‑94 (MQ=60)
TATGCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATG < SRR4302535.2314092/94‑1 (MQ=60)
GCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACG > SRR4302535.1379765/1‑94 (MQ=60)
GCTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACG < SRR4302535.1274795/94‑1 (MQ=60)
CTTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGC > SRR4302535.869328/1‑94 (MQ=60)
TTATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCG < SRR4302535.1879055/94‑1 (MQ=60)
TATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGA > SRR4302535.801353/1‑94 (MQ=60)
ATTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAA > SRR4302535.1895818/1‑94 (MQ=60)
TTGAGATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAAT > SRR4302535.4243734/1‑94 (MQ=60)
GATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATC > SRR4302535.3075479/1‑94 (MQ=60)
ATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCT > SRR4302535.1964297/1‑94 (MQ=60)
ATAGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCT < SRR4302535.2013769/94‑1 (MQ=60)
AGTGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCC > SRR4302535.4424090/1‑94 (MQ=60)
TGATACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCC > SRR4302535.421754/1‑94 (MQ=60)
TACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCC > SRR4302535.4377967/1‑94 (MQ=60)
TACGTAGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCC > SRR4302535.4075545/1‑94 (MQ=60)
GTAGCCCTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAA < SRR4302535.263809/94‑1 (MQ=60)
AGCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAAT < SRR4302535.3974020/94‑1 (MQ=60)
GCACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATC < SRR4302535.2255686/94‑1 (MQ=60)
CACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCT > SRR4302535.4672673/1‑94 (MQ=60)
CACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCT > SRR4302535.2258135/1‑94 (MQ=60)
CACTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCT > SRR4302535.394548/1‑94 (MQ=60)
CTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTAC < SRR4302535.2174202/94‑1 (MQ=60)
CTCCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTAC > SRR4302535.3833029/1‑94 (MQ=60)
CCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGG > SRR4302535.2871542/1‑94 (MQ=60)
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AATTTATGGCGTACTGAAGCCCTATGTTAATTTCTTTGCGGTAACGTAATCCGGAACACATTATGCTTATTGAGATAGTGATACGTAGCACTTCCCCCATGCAATTCGGCAATCGCTTTGACTAAAGAAAGGCCTAGTCCCTGACCTACGGAATGACGCGAATTATCTCCCCGCCAAAATCTACGG > NC_000913/2034790‑2034975
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
