Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,079,216 T→C E23E (GAA→GAG)  sbmC ← SbmC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,079,2160TC96.4% 397.8 / 3.1 137E23E (GAA→GAG) sbmCSbmC
Reads supporting (aligned to +/- strand):  ref base T (2/3);  new base C (72/60);  total (74/63)
Fisher's exact test for biased strand distribution p-value = 6.61e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01

Only 100 of 137 total aligned reads displayed.

GTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTT  >  NC_000913/2079129‑2079306
                                                                                       |                                                                                          
 tAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCAc                                                                                      <  1:1371879/93‑1 (MQ=255)
 tAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCAc                                                                                      >  1:2654386/1‑93 (MQ=255)
  aaTAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACg                                                                                     >  2:2504461/1‑93 (MQ=255)
   aTAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACgg                                                                                    >  2:1669150/1‑93 (MQ=255)
   aTAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACgg                                                                                    >  1:4054731/1‑93 (MQ=255)
    tAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACggg                                                                                   >  1:930102/1‑93 (MQ=255)
    tAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACggg                                                                                   >  2:1589189/1‑93 (MQ=255)
     aGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGc                                                                                  <  1:279188/93‑1 (MQ=255)
      gACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGcc                                                                                 <  2:453497/93‑1 (MQ=255)
        cAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCaa                                                                               <  2:1710291/93‑1 (MQ=255)
          gCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACg                                                                             >  1:2147071/1‑93 (MQ=255)
           cAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACga                                                                            <  2:2505660/93‑1 (MQ=255)
            aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACgag                                                                           >  1:3950002/1‑93 (MQ=255)
            aaCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACAGTCTGCTCCCACGGGCCAACgag                                                                           >  1:2933244/1‑93 (MQ=255)
             aCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACgaga                                                                          <  1:3858808/93‑1 (MQ=255)
             aCCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACgaga                                                                          <  1:992921/93‑1 (MQ=255)
              cccACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGAt                                                                         >  1:2829239/1‑93 (MQ=255)
                cACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATgg                                                                       >  1:2434684/1‑93 (MQ=255)
                 aCTCCTTTGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGa                                                                      >  2:2773241/1‑93 (MQ=255)
                 aCTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGa                                                                      >  2:3296940/1‑93 (MQ=255)
                  cTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCCACGAGATGGaa                                                                     >  2:2070446/1‑93 (MQ=255)
                  cTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGaa                                                                     >  1:3875488/1‑93 (MQ=255)
                  cTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGaa                                                                     >  2:3284885/1‑93 (MQ=255)
                   tCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGaaa                                                                    >  1:2808160/1‑93 (MQ=255)
                   cccTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGaaa                                                                    <  1:4145206/92‑1 (MQ=255)
                         ggCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCa                                                              >  2:1507686/1‑93 (MQ=255)
                         ggCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCa                                                              <  2:541717/93‑1 (MQ=255)
                         ggCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCa                                                              >  1:3355705/1‑93 (MQ=255)
                           cacaATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAAc                                                            >  2:1201283/1‑93 (MQ=255)
                           cacaATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAAc                                                            <  2:3161519/93‑1 (MQ=255)
                             caATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACgg                                                          <  1:4386538/93‑1 (MQ=255)
                             caATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACgg                                                          <  1:1542593/93‑1 (MQ=255)
                              aaTATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGt                                                         >  2:1451990/1‑93 (MQ=255)
                               atatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTa                                                        >  2:1577176/1‑93 (MQ=255)
                               atatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTa                                                        <  1:2322845/93‑1 (MQ=255)
                               atatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTa                                                        <  2:1699482/93‑1 (MQ=255)
                                tatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCTTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTAc                                                       <  2:1148128/93‑1 (MQ=255)
                                tatTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTAc                                                       >  1:1012390/1‑93 (MQ=255)
                                       gCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTtctc                                                >  2:3124113/1‑93 (MQ=255)
                                       gCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTtctc                                                <  1:2319359/93‑1 (MQ=255)
                                          aTCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTc                                             >  1:2104370/1‑93 (MQ=255)
                                           tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTcc                                            >  1:2124350/1‑93 (MQ=255)
                                           tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTcc                                            <  1:515117/93‑1 (MQ=255)
                                           tCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTcc                                            >  1:230131/1‑93 (MQ=255)
                                              aCCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGc                                         <  2:367236/93‑1 (MQ=255)
                                              aCCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGc                                         >  2:1921872/1‑93 (MQ=255)
                                              aCCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGc                                         >  1:3688976/1‑93 (MQ=255)
                                               cccACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCt                                        >  1:3136117/1‑93 (MQ=255)
                                               cccACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCt                                        >  2:1975665/1‑93 (MQ=255)
                                               cccACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCt                                        >  2:1410989/1‑93 (MQ=255)
                                                ccACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCtt                                       >  2:3235505/1‑93 (MQ=255)
                                                ccACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCtt                                       >  2:4447713/1‑93 (MQ=255)
                                                  acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTaa                                     >  2:2981149/1‑93 (MQ=255)
                                                  acaTCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTaa                                     <  1:1628393/93‑1 (MQ=255)
                                                    atcatcAACTGCTCAAAGCCTTTCTTTACTGTCTGCTCCCACGGTCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAAtc                                   <  1:2941807/93‑1 (MQ=255)
                                                     tcatcaACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAAtct                                  >  2:3540520/1‑93 (MQ=255)
                                                       atcaACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCg                                >  2:2892317/1‑93 (MQ=255)
                                                       atcaACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCg                                <  2:3679604/93‑1 (MQ=255)
                                                           aCTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGt                            >  1:1666807/1‑93 (MQ=255)
                                                           aCTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGt                            <  1:3854035/93‑1 (MQ=255)
                                                           aCTGCTCAAAGCCTTTCTTCACCGTCTGCTCCCACGGGCCAACGCGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGt                            >  2:4584403/1‑93 (MQ=255)
                                                              gCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCa                         >  2:2403754/1‑93 (MQ=255)
                                                               cTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCAt                        <  1:691146/93‑1 (MQ=255)
                                                                tCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATg                       <  1:2310669/93‑1 (MQ=255)
                                                                tCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATg                       >  1:2787426/1‑93 (MQ=255)
                                                                tCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTATTCCTGCTTAATCTCGTCGTTCATg                       >  2:2595051/1‑93 (MQ=255)
                                                                 cAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGa                      <  1:3311177/93‑1 (MQ=255)
                                                                 cAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGa                      <  2:3607441/93‑1 (MQ=255)
                                                                  aaaGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAACCCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGAc                     <  2:309036/93‑1 (MQ=255)
                                                                    aGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGc                   >  2:2359446/1‑93 (MQ=255)
                                                                     gCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGcc                  >  1:1747611/1‑93 (MQ=255)
                                                                     gCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGcc                  <  1:172680/93‑1 (MQ=255)
                                                                      ccTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCt                 >  1:2903965/1‑93 (MQ=255)
                                                                       ctttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTc                >  2:1149558/1‑93 (MQ=255)
                                                                        tttctttACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc               <  1:4409715/93‑1 (MQ=255)
                                                                        tttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc               >  2:658775/1‑93 (MQ=255)
                                                                        tttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc               >  2:2259199/1‑93 (MQ=255)
                                                                        tttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc               >  2:2850389/1‑93 (MQ=255)
                                                                        tttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTcc               >  2:2908636/1‑93 (MQ=255)
                                                                         ttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCa              <  1:2256470/93‑1 (MQ=255)
                                                                         ttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCa              <  1:1594955/93‑1 (MQ=255)
                                                                         ttctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCa              <  1:153816/93‑1 (MQ=255)
                                                                           ctttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCAtt            <  1:2949597/93‑1 (MQ=255)
                                                                            tttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTg           <  1:899854/93‑1 (MQ=255)
                                                                            tttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTg           >  2:1792645/1‑93 (MQ=255)
                                                                            tttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTg           >  2:1913690/1‑93 (MQ=255)
                                                                             ttACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGa          <  1:1526017/93‑1 (MQ=255)
                                                                              tACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt         <  2:4206158/93‑1 (MQ=255)
                                                                              tACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAt         <  2:1979293/93‑1 (MQ=255)
                                                                               aCCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATa        <  1:2549101/93‑1 (MQ=255)
                                                                                ccGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc       <  1:610223/93‑1 (MQ=255)
                                                                                ccGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc       >  1:3463377/1‑93 (MQ=255)
                                                                                ccGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc       <  1:2739788/93‑1 (MQ=255)
                                                                                ccGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc       <  1:2739787/93‑1 (MQ=255)
                                                                                ccGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAc       <  2:2580655/93‑1 (MQ=255)
                                                                                  gTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTg     <  2:3073685/93‑1 (MQ=255)
                                                                                  gTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTg     <  1:1436896/93‑1 (MQ=255)
                                                                                  gTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTg     >  2:2512880/1‑93 (MQ=255)
                                                                                   tCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGt    <  2:1728392/93‑1 (MQ=255)
                                                                                   tCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGt    >  1:2407052/1‑93 (MQ=255)
                                                                                       |                                                                                          
GTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTT  >  NC_000913/2079129‑2079306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTT  >  NC_000913/2079123‑2079306
                                                                                             |                                                                                          
ATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGC                                                                                            >  SRR4302535.1433526/1‑94 (MQ=60)
 TTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCT                                                                                           <  SRR4302535.1141363/94‑1 (MQ=60)
      GTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTTCTCAAAGCCTTTCTTTACCGTCTGCTCCCAC                                                                                      <  SRR4302535.1485107/94‑1 (MQ=60)
      GTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCAC                                                                                      >  SRR4302535.2673403/1‑94 (MQ=60)
       TAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACG                                                                                     <  SRR4302535.1381681/94‑1 (MQ=60)
        AATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGG                                                                                    >  SRR4302535.4082494/1‑94 (MQ=60)
         ATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGG                                                                                   >  SRR4302535.936680/1‑94 (MQ=60)
           AGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCC                                                                                 <  SRR4302535.281135/94‑1 (MQ=60)
               AGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACG                                                                             >  SRR4302535.7663/1‑94 (MQ=60)
               AGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACG                                                                             >  SRR4302535.2162516/1‑94 (MQ=60)
                 CAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAG                                                                           >  SRR4302535.3976970/1‑94 (MQ=60)
                 CAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACAGTCTGCTCCCACGGGCCAACGAG                                                                           >  SRR4302535.2953890/1‑94 (MQ=60)
                   ACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGAT                                                                         <  SRR4302535.3885365/94‑1 (MQ=60)
                   ACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGAT                                                                         <  SRR4302535.999973/94‑1 (MQ=60)
                   ACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGAT                                                                         >  SRR4302535.2849319/1‑94 (MQ=60)
                    CCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATG                                                                        <  SRR4302535.2259675/94‑1 (MQ=60)
                     CCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGG                                                                       <  SRR4302535.1688961/94‑1 (MQ=60)
                     CCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGG                                                                       >  SRR4302535.2452223/1‑94 (MQ=60)
                       ACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAA                                                                     >  SRR4302535.3902111/1‑94 (MQ=60)
                       ACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAA                                                                     >  SRR4302535.4350697/1‑94 (MQ=60)
                        CTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAA                                                                    >  SRR4302535.2828125/1‑94 (MQ=60)
                        CTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAA                                                                    >  SRR4302535.2327242/1‑94 (MQ=60)
                         CCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAAC                                                                   <  SRR4302535.4173591/94‑1 (MQ=60)
                          CCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGGTGGAAACC                                                                  >  SRR4302535.1579028/1‑94 (MQ=60)
                          CCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACC                                                                  >  SRR4302535.2627069/1‑94 (MQ=60)
                              CGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCA                                                              >  SRR4302535.3379070/1‑94 (MQ=60)
                                   CAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGT                                                         <  SRR4302535.34804/94‑1 (MQ=60)
                                   CAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGT                                                         <  SRR4302535.1553712/94‑1 (MQ=60)
                                   CAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGT                                                         <  SRR4302535.4416548/94‑1 (MQ=60)
                                     ATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTAC                                                       >  SRR4302535.2787932/1‑94 (MQ=60)
                                     ATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTAC                                                       >  SRR4302535.1019589/1‑94 (MQ=60)
                                     ATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTAC                                                       <  SRR4302535.2339467/94‑1 (MQ=60)
                                       ATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGT                                                     <  SRR4302535.3867069/94‑1 (MQ=60)
                                        TTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTT                                                    <  SRR4302535.100116/94‑1 (MQ=60)
                                         TTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTT                                                   >  SRR4302535.1998466/1‑94 (MQ=60)
                                             GCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCT                                               <  SRR4302535.2335962/94‑1 (MQ=60)
                                               TATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTC                                             >  SRR4302535.2119545/1‑94 (MQ=60)
                                               TATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTC                                             >  SRR4302535.2831235/1‑94 (MQ=60)
                                                ATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCC                                            >  SRR4302535.231719/1‑94 (MQ=60)
                                                ATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCC                                            >  SRR4302535.2139662/1‑94 (MQ=60)
                                                 TCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCT                                           <  SRR4302535.518718/94‑1 (MQ=60)
                                                   TACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGC                                         >  SRR4302535.3714507/1‑94 (MQ=60)
                                                    ACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCT                                        >  SRR4302535.3157944/1‑94 (MQ=60)
                                                    ACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCT                                        <  SRR4302535.2340284/94‑1 (MQ=60)
                                                        ACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAAT                                    <  SRR4302535.1640152/94‑1 (MQ=60)
                                                          ATCATCAACTGCTCAAAGCCTTTCTTTACTGTCTGCTCCCACGGTCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCT                                  <  SRR4302535.2962495/94‑1 (MQ=60)
                                                             ATCAACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGT                               >  SRR4302535.3091820/1‑94 (MQ=60)
                                                                AACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGT                            >  SRR4302535.1678866/1‑94 (MQ=60)
                                                                 ACTGCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTT                           <  SRR4302535.3880575/94‑1 (MQ=60)
                                                                    GCTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCAT                        <  SRR4302535.396690/94‑1 (MQ=60)
                                                                     CTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATG                       >  SRR4302535.2807259/1‑94 (MQ=60)
                                                                     CTCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATG                       <  SRR4302535.695989/94‑1 (MQ=60)
                                                                      TCAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGA                      <  SRR4302535.2327206/94‑1 (MQ=60)
                                                                       CAAAGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGAC                     <  SRR4302535.3334220/94‑1 (MQ=60)
                                                                          AGCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCC                  >  SRR4302535.1760251/1‑94 (MQ=60)
                                                                           GCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCT                 >  SRR4302535.2924493/1‑94 (MQ=60)
                                                                           GCCTTTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCT                 <  SRR4302535.173875/94‑1 (MQ=60)
                                                                              TTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCA              <  SRR4302535.4439892/94‑1 (MQ=60)
                                                                               TTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCAT             <  SRR4302535.2272533/94‑1 (MQ=60)
                                                                               TTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCAT             <  SRR4302535.1606460/94‑1 (MQ=60)
                                                                               TTCTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCAT             <  SRR4302535.154897/94‑1 (MQ=60)
                                                                                 CTTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTG           <  SRR4302535.2970318/94‑1 (MQ=60)
                                                                                  TTTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGA          <  SRR4302535.906226/94‑1 (MQ=60)
                                                                                   TTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAT         <  SRR4302535.1537013/94‑1 (MQ=60)
                                                                                   TTACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGAT         <  SRR4302535.2947414/94‑1 (MQ=60)
                                                                                     ACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAC       <  SRR4302535.2567444/94‑1 (MQ=60)
                                                                                     ACCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATAC       >  SRR4302535.3487449/1‑94 (MQ=60)
                                                                                      CCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACT      <  SRR4302535.614474/94‑1 (MQ=60)
                                                                                      CCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACT      <  SRR4302535.2759320/94‑1 (MQ=60)
                                                                                      CCGTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACT      <  SRR4302535.2759319/94‑1 (MQ=60)
                                                                                        GTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGT    <  SRR4302535.1447163/94‑1 (MQ=60)
                                                                                        GTCTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGT    >  SRR4302535.2424380/1‑94 (MQ=60)
                                                                                          CTGTTCCCACGGGCCAACGAGATGGAAACCTGTAACTGTACGTTTCTCTTCCTGTTGTATCTCGTAGCTTATGACGCCTCCATTGATACTGTTT  >  SRR4302535.4718854/1‑94 (MQ=60)
                                                                                          CTGCTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTT  >  SRR4302535.332747/1‑94 (MQ=60)
                                                                                             |                                                                                          
ATTGTCGTAATAGACAGCAACCCACTCCTTCGGCACAATATTTTTGCTATCTACCCACATCATCAACTGCTCAAAGCCTTTCTTTACCGTCTGTTCCCACGGGCCAACGAGATGGAAACCTGCAACGGTACGTTTCTCTTCCTGCTTAATCTCGTAGTTCATGACGCCTCCATTGATACTGTTT  >  NC_000913/2079123‑2079306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑