Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,088,138 |
(C)5→6 |
intergenic (+70/‑76) |
hisL → / → hisG |
his operon leader peptide/ATP phosphoribosyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,088,133 | 1 | . | C | 97.5%
| 369.9
/ 2.1
| 122 | intergenic (+65/‑81) | hisL/hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (57/61); total (60/62) |
| Fisher's exact test for biased strand distribution p-value = 6.13e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.47e-01 |
Only 100 of 133 total aligned reads displayed.
CCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAG > NC_000913/2088041‑2088220
|
ccaccaTCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAg < 2:3726431/93‑1 (MQ=255)
ccaccaTCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAg < 2:444650/93‑1 (MQ=255)
caccatcatcaccatcatCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑c < 1:3790018/93‑1 (MQ=255)
catcatcatcatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑c < 2:3537558/93‑1 (MQ=255)
atcatcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑cc > 1:1118223/1‑93 (MQ=255)
atcatcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑cc < 2:778043/93‑1 (MQ=255)
atcatcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑cc < 1:2077904/93‑1 (MQ=255)
atcatcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑cc < 2:3081457/93‑1 (MQ=255)
atcaccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑cc‑c‑cccgg > 1:4127310/1‑90 (MQ=255)
accatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAg > 2:2491081/1‑93 (MQ=255)
ccatcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGa > 1:4190127/1‑93 (MQ=255)
catcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGAt < 1:3591030/93‑1 (MQ=255)
catcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGAt < 1:229746/93‑1 (MQ=255)
catcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATAAGAAAGCCC‑C‑CCGGAAGAt < 2:4557364/93‑1 (MQ=255)
atcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATc < 2:1800142/93‑1 (MQ=255)
atcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATc > 1:4365133/1‑93 (MQ=255)
atcatcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATc > 1:4627807/1‑93 (MQ=255)
atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCAcc > 1:3366561/1‑93 (MQ=255)
atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCAcc > 1:3411355/1‑93 (MQ=255)
atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCAcc < 1:973786/93‑1 (MQ=255)
atcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCAcc > 2:1156774/1‑93 (MQ=255)
tcCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCt > 1:1822297/1‑93 (MQ=255)
cTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTc < 1:2042605/93‑1 (MQ=255)
tGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATGTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTcc > 1:3298394/1‑93 (MQ=255)
tGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTcc < 2:2699474/93‑1 (MQ=255)
tGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTcc > 1:1398079/1‑93 (MQ=255)
tGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTcc > 1:2977582/1‑93 (MQ=255)
gACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCg < 1:2810773/93‑1 (MQ=255)
aCTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCgg < 1:3874800/93‑1 (MQ=255)
cTATTCTTTCAGACGATGTCTGCTATAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCggg < 2:2659498/93‑1 (MQ=255)
tAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCgggg < 1:1103171/93‑1 (MQ=255)
tAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCgggg > 1:2245492/1‑93 (MQ=255)
gTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGc > 2:3718189/1‑93 (MQ=255)
cTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCtt < 2:2235966/93‑1 (MQ=255)
tCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCttttt < 2:153106/93‑1 (MQ=255)
cAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCtttttt > 1:3870288/1‑93 (MQ=255)
ggCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTAt < 1:848821/93‑1 (MQ=255)
ggCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTAt > 1:1877727/1‑93 (MQ=255)
ggCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CC‑CGCCGGCAGATCACCTTCCGGGGGCTTTTTTAt > 1:407156/1‑93 (MQ=255)
gCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTAtt < 1:4347192/93‑1 (MQ=255)
cGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTg < 1:3801126/93‑1 (MQ=255)
aTGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTgcg < 2:4131296/93‑1 (MQ=255)
tgtgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTgcgc > 1:441509/1‑93 (MQ=255)
tgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCgg > 2:1858328/1‑93 (MQ=255)
tgtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCgg > 1:2501286/1‑93 (MQ=255)
gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGt < 2:2180785/93‑1 (MQ=255)
gtgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGt < 1:1023466/93‑1 (MQ=255)
tgCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGtt > 1:2166914/1‑93 (MQ=255)
gCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTg > 2:311569/1‑93 (MQ=255)
cTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGa < 1:3942828/93‑1 (MQ=255)
cTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGa < 2:299584/93‑1 (MQ=255)
tGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGAt < 2:4665787/93‑1 (MQ=255)
tGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGAt > 2:150980/1‑93 (MQ=255)
ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATa < 2:2322732/93‑1 (MQ=255)
ggAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATa < 1:568620/93‑1 (MQ=255)
gAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATaa < 1:2406401/93‑1 (MQ=255)
gAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATaa < 2:1111455/93‑1 (MQ=255)
gAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAAc > 2:2762005/1‑93 (MQ=255)
aaGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAAc > 2:375617/1‑93 (MQ=255)
aGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATTACg > 1:1091586/1‑93 (MQ=255)
aGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACg > 2:838740/1‑93 (MQ=255)
aGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACg > 1:4006598/1‑93 (MQ=255)
cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGtt < 2:2345980/93‑1 (MQ=255)
cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGtt > 1:4168832/1‑93 (MQ=255)
cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGtt > 2:1043328/1‑93 (MQ=255)
cATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGACC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGtt > 2:1432536/1‑93 (MQ=255)
ttCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCa < 2:1434325/93‑1 (MQ=255)
cAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGa > 2:2987054/1‑93 (MQ=255)
cAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGa < 1:1644860/93‑1 (MQ=255)
gATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACa < 1:3991417/93‑1 (MQ=255)
aTCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAg > 1:1147820/1‑93 (MQ=255)
aTCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAg < 2:1442733/93‑1 (MQ=255)
tCTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAgg > 2:391845/1‑93 (MQ=255)
cTTCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGt < 2:3376362/93‑1 (MQ=255)
cTTCCAGTGGTGAATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGt > 1:2532927/1‑93 (MQ=255)
ttCCAGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGtt > 1:575299/1‑93 (MQ=255)
aGTGGTGCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTaaa > 2:2002707/1‑93 (MQ=255)
gtggtgCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAag > 2:1555255/1‑93 (MQ=255)
gtggtgCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAag > 1:4162125/1‑93 (MQ=255)
gtggtgCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAag < 2:638286/93‑1 (MQ=255)
tggtgCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAaga < 1:9975/93‑1 (MQ=255)
tgCATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGa < 1:2797403/93‑1 (MQ=255)
cATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAt < 1:1174839/93‑1 (MQ=255)
cATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAt > 1:3547314/1‑93 (MQ=255)
cATGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAt > 1:3732606/1‑93 (MQ=255)
tGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATaa > 1:1407667/1‑93 (MQ=255)
tGAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATaa > 2:1259817/1‑93 (MQ=255)
gAACGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGTCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAAc < 2:3454786/93‑1 (MQ=255)
aCGCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACaa < 2:2113733/93‑1 (MQ=255)
gCATGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACaaaa < 2:1189022/93‑1 (MQ=255)
aTGAGAAAG‑CCAC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATg < 2:3064124/93‑1 (MQ=255)
tGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga > 1:3851917/1‑93 (MQ=255)
tGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga > 2:3885096/1‑93 (MQ=255)
tGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga < 1:4223137/93‑1 (MQ=255)
tGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga > 1:1282933/1‑93 (MQ=255)
tGAGAAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATga < 1:1149809/93‑1 (MQ=255)
agaAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgaca < 1:3076351/93‑1 (MQ=255)
agaAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgaca > 1:2323805/1‑93 (MQ=255)
agaAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgaca > 1:703988/1‑93 (MQ=255)
gaAAGCCC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATgacag < 2:1868555/93‑1 (MQ=255)
|
CCACCATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CC‑C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAG > NC_000913/2088041‑2088220
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCG > NC_000913/2088045‑2088230
|
CATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CC > SRR4302535.1126200/1‑94 (MQ=60)
ATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CCC > SRR4302535.4195872/1‑94 (MQ=60)
ATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CCC < SRR4302535.2092872/94‑1 (MQ=60)
CATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CCcgg > SRR4302535.4155553/1‑91 (MQ=60)
CACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAG < SRR4302535.3112618/94‑1 (MQ=60)
ACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGA > SRR4302535.4218804/1‑94 (MQ=60)
CCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGAT < SRR4302535.2369394/94‑1 (MQ=60)
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATC > SRR4302535.4659220/1‑94 (MQ=60)
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATC < SRR4302535.231329/94‑1 (MQ=60)
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATC > SRR4302535.4395004/1‑94 (MQ=60)
CATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATC < SRR4302535.3615935/94‑1 (MQ=60)
CATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACC > SRR4302535.3435087/1‑94 (MQ=60)
CATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACC > SRR4302535.3389987/1‑94 (MQ=60)
ATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCT < SRR4302535.980698/94‑1 (MQ=60)
ATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCT > SRR4302535.1835460/1‑94 (MQ=60)
TCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTT < SRR4302535.4253475/94‑1 (MQ=60)
CTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATGTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCC > SRR4302535.3321330/1‑94 (MQ=60)
CTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCC > SRR4302535.1408060/1‑94 (MQ=60)
CTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCC < SRR4302535.2057322/94‑1 (MQ=60)
CTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCC > SRR4302535.2998471/1‑94 (MQ=60)
GACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGG < SRR4302535.2830754/94‑1 (MQ=60)
ACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGG < SRR4302535.3901423/94‑1 (MQ=60)
CTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGG > SRR4302535.2261459/1‑94 (MQ=60)
TAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGG < SRR4302535.1111052/94‑1 (MQ=60)
AGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGG < SRR4302535.987634/94‑1 (MQ=60)
GTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCT > SRR4302535.2796725/1‑94 (MQ=60)
TCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTT > SRR4302535.3896887/1‑94 (MQ=60)
AGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTAT > SRR4302535.1891253/1‑94 (MQ=60)
AGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCCGCCGGCAGATCACCTTCCGGGGGCTTTTTTAT > SRR4302535.410009/1‑94 (MQ=60)
GGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATT < SRR4302535.1153020/94‑1 (MQ=60)
GGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATT < SRR4302535.854791/94‑1 (MQ=60)
GCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTG < SRR4302535.4376935/94‑1 (MQ=60)
GCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTG < SRR4302535.679401/94‑1 (MQ=60)
CGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGC < SRR4302535.3827327/94‑1 (MQ=60)
CGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGC > SRR4302535.4091840/1‑94 (MQ=60)
ATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGC > SRR4302535.444600/1‑94 (MQ=60)
GTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGG > SRR4302535.2519325/1‑94 (MQ=60)
GTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTT < SRR4302535.1030737/94‑1 (MQ=60)
GTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTT < SRR4302535.3915810/94‑1 (MQ=60)
GTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTT > SRR4302535.2182447/1‑94 (MQ=60)
CTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGAT < SRR4302535.3969742/94‑1 (MQ=60)
CTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGAT < SRR4302535.3860113/94‑1 (MQ=60)
TGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATA < SRR4302535.4649382/94‑1 (MQ=60)
GGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAA < SRR4302535.572614/94‑1 (MQ=60)
GAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAAC < SRR4302535.2423724/94‑1 (MQ=60)
AAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATTACG > SRR4302535.1099363/1‑94 (MQ=60)
AAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACG > SRR4302535.4034010/1‑94 (MQ=60)
AAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACG < SRR4302535.3637002/94‑1 (MQ=60)
GACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGT > SRR4302535.3428864/1‑94 (MQ=60)
ACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTT > SRR4302535.4197377/1‑94 (MQ=60)
CAGATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGAC < SRR4302535.1656749/94‑1 (MQ=60)
GATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAG > SRR4302535.1155998/1‑94 (MQ=60)
GATCTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAG < SRR4302535.4018718/94‑1 (MQ=60)
TCTTCCAGTGGTGAATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGT > SRR4302535.2551176/1‑94 (MQ=60)
CTTCCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTT > SRR4302535.579338/1‑94 (MQ=60)
CCAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAA < SRR4302535.1507107/94‑1 (MQ=60)
CAGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAA < SRR4302535.3023429/94‑1 (MQ=60)
AGTGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAG > SRR4302535.4190614/1‑94 (MQ=60)
TGGTGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAG < SRR4302535.10053/94‑1 (MQ=60)
TGCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAA < SRR4302535.2817310/94‑1 (MQ=60)
GCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAT > SRR4302535.3758449/1‑94 (MQ=60)
GCATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAAT > SRR4302535.3571941/1‑94 (MQ=60)
CATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATA < SRR4302535.1183225/94‑1 (MQ=60)
ATGAACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAA > SRR4302535.1417725/1‑94 (MQ=60)
AACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAA < SRR4302535.1934565/94‑1 (MQ=60)
ACGCATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAA > SRR4302535.1228543/1‑94 (MQ=60)
CATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATG > SRR4302535.2217617/1‑94 (MQ=60)
ATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGA > SRR4302535.1292082/1‑94 (MQ=60)
ATGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGA > SRR4302535.3878420/1‑94 (MQ=60)
TGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGAC < SRR4302535.4252033/94‑1 (MQ=60)
TGAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGAC < SRR4302535.1158000/94‑1 (MQ=60)
GAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACA > SRR4302535.708925/1‑94 (MQ=60)
GAGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACA > SRR4302535.2340432/1‑94 (MQ=60)
AGAAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAG < SRR4302535.3097812/94‑1 (MQ=60)
AAAGCCCC‑CCGGAAGATCACCTTCCGGGTGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGAC < SRR4302535.3226668/94‑1 (MQ=60)
AAAGCCCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGAC > SRR4302535.1982463/1‑94 (MQ=60)
CC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACT > SRR4302535.1359254/1‑94 (MQ=60)
CC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAAAGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACT > SRR4302535.4389261/1‑94 (MQ=60)
C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTC < SRR4302535.4092474/94‑1 (MQ=60)
C‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTC < SRR4302535.2898022/94‑1 (MQ=60)
CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCG > SRR4302535.518184/1‑94 (MQ=60)
CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCG > SRR4302535.3019710/1‑94 (MQ=60)
|
CATCATCACCATCATCCTGACTAGTCTTTCAGGCGATGTGTGCTGGAAGACATTCAGATCTTCCAGTGGTGCATGAACGCATGAGAAAG‑CCC‑CCGGAAGATCACCTTCCGGGGGCTTTTTTATTGCGCGGTTGATAACGGTTCAGACAGGTTTAAAGAGGAATAACAAAATGACAGACAACACTCG > NC_000913/2088045‑2088230
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
