Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,115,180 T→C Q416R (CAG→CGG)  wcaK ← putative galactokinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,115,1800TC100.0% 353.2 / NA 112Q416R (CAG→CGG) wcaKputative galactokinase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (57/55);  total (57/55)

Only 100 of 116 total aligned reads displayed.

GTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACTGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCA  >  NC_000913/2115090‑2115269
                                                                                          |                                                                                         
gTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGc                                                                                         <  2:1197237/93‑1 (MQ=255)
gTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGc                                                                                         >  2:357113/1‑93 (MQ=255)
 ttAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCa                                                                                        <  1:1401398/93‑1 (MQ=255)
 ttAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCa                                                                                        >  1:1835560/1‑93 (MQ=255)
  tAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCAc                                                                                       >  1:3152953/1‑93 (MQ=255)
    aGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCa                                                                                     >  1:1189379/1‑93 (MQ=255)
     ggACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCAt                                                                                    <  1:569917/93‑1 (MQ=255)
     ggACGAAGGTCTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTGCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCAt                                                                                    <  2:2055935/93‑1 (MQ=255)
       aCGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCt                                                                                  <  2:2631173/93‑1 (MQ=255)
         gAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGc                                                                                <  2:2700613/93‑1 (MQ=255)
          aaGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCa                                                                               <  1:2509705/93‑1 (MQ=255)
             gTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTc                                                                            >  1:3492457/1‑93 (MQ=255)
              tttGTGACGACAGGGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCGGATGCGCTCAAGCACAGACCGCACCATCTGCATTcc                                                                           <  1:527023/93‑1 (MQ=255)
               ttCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCt                                                                          <  1:1849214/93‑1 (MQ=255)
                tCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTg                                                                         >  1:2688132/1‑93 (MQ=255)
                 cTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGt                                                                        <  1:922311/93‑1 (MQ=255)
                  tGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTc                                                                       >  1:3360808/1‑93 (MQ=255)
                  tGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTc                                                                       <  1:621517/93‑1 (MQ=255)
                   gacgacAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCt                                                                      <  2:298431/93‑1 (MQ=255)
                     cgacAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGa                                                                    <  2:1103398/93‑1 (MQ=255)
                     cgacAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGa                                                                    <  2:2304380/93‑1 (MQ=255)
                          gCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTc                                                               >  1:4299789/1‑93 (MQ=255)
                          gCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTc                                                               >  2:108574/1‑93 (MQ=255)
                          gCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTc                                                               >  1:488579/1‑93 (MQ=255)
                           cGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCTCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGGCGCTCa                                                              <  1:1778995/93‑1 (MQ=255)
                             ggAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACg                                                            >  1:2907617/1‑93 (MQ=255)
                              gAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGa                                                           <  1:446630/93‑1 (MQ=255)
                              gAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGa                                                           <  2:4085776/93‑1 (MQ=255)
                               aaTTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGAc                                                          <  1:2433304/93‑1 (MQ=255)
                               aaTTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGAc                                                          <  2:2865857/93‑1 (MQ=255)
                                 tttCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTg                                                        >  1:261776/1‑93 (MQ=255)
                                 tttCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTg                                                        >  1:1765481/1‑93 (MQ=255)
                                  ttCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACAGCACCATCTGCATTCCTGTCTGACGCTCACGACTgc                                                       >  1:1778798/1‑92 (MQ=255)
                                   tCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGAc                                                      <  1:1297744/93‑1 (MQ=255)
                                    cAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACg                                                     <  2:2683664/93‑1 (MQ=255)
                                     aGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACgg                                                    >  1:4653133/1‑93 (MQ=255)
                                         aaaaGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTc                                                >  1:3971322/1‑93 (MQ=255)
                                         aaaaGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTc                                                <  1:3113563/93‑1 (MQ=255)
                                          aaaGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCa                                               >  1:2948535/1‑93 (MQ=255)
                                           aagaagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCat                                              >  1:2281221/1‑92 (MQ=255)
                                           aagaagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCAc                                              >  1:4107594/1‑93 (MQ=255)
                                             gaagCCGCCCTTCATTTCGCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCCTCACTa                                            <  2:1450764/93‑1 (MQ=255)
                                             gaagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTa                                            >  1:367052/1‑93 (MQ=255)
                                             gaagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTa                                            >  2:4227205/1‑93 (MQ=255)
                                              gagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTaa                                           <  1:2143874/92‑1 (MQ=255)
                                              aagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTaa                                           <  1:3569272/93‑1 (MQ=255)
                                              aagCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTaa                                           <  2:4348366/93‑1 (MQ=255)
                                              aagCCGACCTTCATTCCGCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTaa                                           <  1:1655914/93‑1 (MQ=255)
                                               agCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAg                                          <  2:2267281/93‑1 (MQ=255)
                                                gCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGt                                         >  1:4192508/1‑93 (MQ=255)
                                                 ccGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTc                                        <  2:2903782/93‑1 (MQ=255)
                                                  cGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGCCTGACTGCTTCACTAAGTcg                                       >  1:2894217/1‑93 (MQ=255)
                                                  cGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTcg                                       >  1:4337380/1‑93 (MQ=255)
                                                  cGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTcg                                       <  1:2320187/93‑1 (MQ=255)
                                                   gACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTcgc                                      <  2:1602802/93‑1 (MQ=255)
                                                   gACCTTCATGTCTCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTTACGCTCACGACGGACGGCTTCTCTAAGTcgc                                      <  2:4579169/93‑1 (MQ=255)
                                                    aCCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTcgcg                                     >  1:2953711/1‑93 (MQ=255)
                                                    aCCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTcgcg                                     >  1:2384129/1‑93 (MQ=255)
                                                     ccTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCgcgc                                    >  2:3070143/1‑93 (MQ=255)
                                                      cTTCATTTCTCCCCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCa                                   <  2:143767/93‑1 (MQ=255)
                                                      cTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCa                                   <  2:2167260/93‑1 (MQ=255)
                                                        tCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCAtt                                 <  1:3883368/93‑1 (MQ=255)
                                                         cATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTc                                >  1:270131/1‑93 (MQ=255)
                                                         cATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTc                                >  2:2408639/1‑93 (MQ=255)
                                                          aTTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCa                               <  2:2208830/93‑1 (MQ=255)
                                                          aTTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCa                               >  1:1461609/1‑93 (MQ=255)
                                                           tttCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAg                              <  2:1835560/93‑1 (MQ=255)
                                                            ttCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAgc                             <  2:1984061/93‑1 (MQ=255)
                                                              ccccTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAgcgc                           <  2:2951383/91‑1 (MQ=255)
                                                              cACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAgcgc                           <  2:3822193/93‑1 (MQ=255)
                                                               aCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGAAGGCTTCACTAAGCCGCGCATTCAGCGcc                          >  1:2376129/1‑93 (MQ=255)
                                                                ccTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCg                         >  1:1055313/1‑93 (MQ=255)
                                                                  tCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGa                       >  1:351202/1‑93 (MQ=255)
                                                                  tCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGa                       >  2:3058720/1‑93 (MQ=255)
                                                                  tCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGa                       >  1:2386002/1‑93 (MQ=255)
                                                                  tCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGa                       >  1:4046809/1‑93 (MQ=255)
                                                                   ccccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGaa                      <  2:3684130/93‑1 (MQ=255)
                                                                   ccccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGaa                      <  1:3834399/93‑1 (MQ=255)
                                                                   ccccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGaa                      <  2:1394811/93‑1 (MQ=255)
                                                                    cccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAg                     >  2:1202258/1‑93 (MQ=255)
                                                                     ccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGc                    <  2:4016763/93‑1 (MQ=255)
                                                                     ccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGc                    <  2:1439161/93‑1 (MQ=255)
                                                                     ccGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGc                    >  2:2790790/1‑93 (MQ=255)
                                                                       gATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTg                  <  1:199520/93‑1 (MQ=255)
                                                                       gATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTg                  >  1:485680/1‑93 (MQ=255)
                                                                       gATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTg                  >  2:1815461/1‑93 (MQ=255)
                                                                        aTGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTgg                 >  1:3975655/1‑93 (MQ=255)
                                                                        aTGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTgg                 >  1:623339/1‑93 (MQ=255)
                                                                        aTGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTgc                 >  1:1387947/1‑92 (MQ=255)
                                                                              tCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAg           <  2:3568019/93‑1 (MQ=255)
                                                                              tCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAg           >  1:3905335/1‑93 (MQ=255)
                                                                               cAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAgg          <  2:2063459/93‑1 (MQ=255)
                                                                                aggCACAGCCCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGA‑GGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTa        <  1:3613820/91‑1 (MQ=255)
                                                                                aaGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGt         <  2:1104541/93‑1 (MQ=255)
                                                                                 aGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTa        >  1:3012529/1‑93 (MQ=255)
                                                                                 aGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTa        <  2:2408473/93‑1 (MQ=255)
                                                                                 aGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTa        <  2:398414/93‑1 (MQ=255)
                                                                                    acaGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTCAGGTATcc     >  2:2708452/1‑93 (MQ=255)
                                                                                    acaGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATcc     >  2:3361531/1‑93 (MQ=255)
                                                                                       gACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCa  >  1:305638/1‑93 (MQ=255)
                                                                                          |                                                                                         
GTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACTGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCA  >  NC_000913/2115090‑2115269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACTGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAACC  >  NC_000913/2115087‑2115272
                                                                                             |                                                                                            
TTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACC                                                                                              >  SRR4302535.4103974/1‑94 (MQ=60)
TTGGTGAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACC                                                                                              <  SRR4302535.2518062/94‑1 (MQ=60)
 TGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCG                                                                                             >  SRR4302535.662963/1‑94 (MQ=60)
   GTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCA                                                                                           >  SRR4302535.1848801/1‑94 (MQ=60)
    TTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCAC                                                                                          <  SRR4302535.1411399/94‑1 (MQ=60)
    TTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCAC                                                                                          >  SRR4302535.3174861/1‑94 (MQ=60)
      AAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCA                                                                                        >  SRR4302535.1197898/1‑94 (MQ=60)
       AGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCAT                                                                                       >  SRR4302535.2425813/1‑94 (MQ=60)
        GGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATC                                                                                      <  SRR4302535.573919/94‑1 (MQ=60)
             AAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCAT                                                                                 <  SRR4302535.2527798/94‑1 (MQ=60)
               GGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTC                                                                               >  SRR4302535.3516730/1‑94 (MQ=60)
                 TTTGTGACGACAGGGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCGGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCT                                                                             <  SRR4302535.530703/94‑1 (MQ=60)
                  TTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTG                                                                            <  SRR4302535.1862540/94‑1 (MQ=60)
                  TTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTG                                                                            >  SRR4302535.2707343/1‑94 (MQ=60)
                    CTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTC                                                                          >  SRR4302535.3384200/1‑94 (MQ=60)
                    CTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTC                                                                          <  SRR4302535.928849/94‑1 (MQ=60)
                     TGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCT                                                                         <  SRR4302535.625833/94‑1 (MQ=60)
                            AGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTC                                                                  >  SRR4302535.492004/1‑94 (MQ=60)
                            AGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTC                                                                  >  SRR4302535.4329214/1‑94 (MQ=60)
                              CGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCTCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGGCGCTCAC                                                                <  SRR4302535.1791876/94‑1 (MQ=60)
                               GGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACG                                                               >  SRR4302535.2928167/1‑94 (MQ=60)
                                 GAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGAC                                                             <  SRR4302535.449756/94‑1 (MQ=60)
                                  AATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACT                                                            <  SRR4302535.2450835/94‑1 (MQ=60)
                                   ATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTG                                                           >  SRR4302535.263591/1‑94 (MQ=60)
                                   ATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTG                                                           >  SRR4302535.1778280/1‑94 (MQ=60)
                                    TTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACAGCACCATCTGCATTCCTGTCTGACGCTCACGACTGC                                                          >  SRR4302535.1791678/1‑94 (MQ=60)
                                     TTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGAC                                                         >  SRR4302535.41073/1‑94 (MQ=60)
                                      TCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACG                                                        <  SRR4302535.1307000/94‑1 (MQ=60)
                                       CAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGG                                                       >  SRR4302535.4684637/1‑94 (MQ=60)
                                           AAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTC                                                   >  SRR4302535.3998446/1‑94 (MQ=60)
                                            AAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCA                                                  <  SRR4302535.3135237/94‑1 (MQ=60)
                                            AAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCA                                                  >  SRR4302535.2969250/1‑94 (MQ=60)
                                            AAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGGCTGACGCTCACGACTGACGGCTTCA                                                  >  SRR4302535.3763068/1‑94 (MQ=60)
                                             AAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCAT                                                 >  SRR4302535.2297515/1‑94 (MQ=60)
                                             AAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCAC                                                 >  SRR4302535.4135721/1‑94 (MQ=60)
                                               AGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTA                                               >  SRR4302535.369584/1‑94 (MQ=60)
                                                 GAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAG                                             <  SRR4302535.2159297/94‑1 (MQ=60)
                                                 AAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAG                                             <  SRR4302535.3594025/94‑1 (MQ=60)
                                                 AAGCCGACCTTCATTCCGCCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAG                                             <  SRR4302535.1667892/94‑1 (MQ=60)
                                                  AGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGT                                            >  SRR4302535.4221198/1‑94 (MQ=60)
                                                    CCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGCCTGACTGCTTCACTAAGTCG                                          >  SRR4302535.2914688/1‑94 (MQ=60)
                                                    CCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCG                                          >  SRR4302535.4367043/1‑94 (MQ=60)
                                                     CGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGC                                         <  SRR4302535.2336794/94‑1 (MQ=60)
                                                      GACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCG                                        >  SRR4302535.2974460/1‑94 (MQ=60)
                                                      GACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCG                                        >  SRR4302535.2401250/1‑94 (MQ=60)
                                                           TCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTC                                   <  SRR4302535.3910009/94‑1 (MQ=60)
                                                           TCATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTC                                   >  SRR4302535.272009/1‑94 (MQ=60)
                                                            CATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCA                                  >  SRR4302535.1472081/1‑94 (MQ=60)
                                                             ATTTCACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAG                                 <  SRR4302535.2917440/94‑1 (MQ=60)
                                                                 CACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGAGTGACGGCTTCACTAAGTCGCGCATTCAGCGCC                             >  SRR4302535.3247752/1‑94 (MQ=60)
                                                                 CACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCC                             >  SRR4302535.1734372/1‑94 (MQ=60)
                                                                 CACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGAAGGCTTCACTAAGCCGCGCATTCAGCGCC                             >  SRR4302535.2393199/1‑94 (MQ=60)
                                                                  ACCTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCG                            >  SRR4302535.1062817/1‑94 (MQ=60)
                                                                    CTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGA                          >  SRR4302535.949780/1‑94 (MQ=60)
                                                                    CTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGA                          >  SRR4302535.4074511/1‑94 (MQ=60)
                                                                    CTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGA                          >  SRR4302535.353623/1‑94 (MQ=60)
                                                                    CTCCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGA                          >  SRR4302535.2403148/1‑94 (MQ=60)
                                                                      CCCCGATGCGCTCAAGCACAGCCCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAG                        <  SRR4302535.209265/94‑1 (MQ=60)
                                                                      CCCCGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAG                        <  SRR4302535.3860838/94‑1 (MQ=60)
                                                                         CGATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTG                     >  SRR4302535.489085/1‑94 (MQ=60)
                                                                          GATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGG                    >  SRR4302535.4002812/1‑94 (MQ=60)
                                                                          GATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGG                    >  SRR4302535.627670/1‑94 (MQ=60)
                                                                          GATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGG                    <  SRR4302535.200887/94‑1 (MQ=60)
                                                                          GATGCGCTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGC                    >  SRR4302535.1397851/1‑94 (MQ=60)
                                                                                CTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAG              <  SRR4302535.486423/94‑1 (MQ=60)
                                                                                CTCAAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAG              >  SRR4302535.3932082/1‑94 (MQ=60)
                                                                                   AGGCACAGCCCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGA‑GGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTAT          <  SRR4302535.3638874/94‑1 (MQ=60)
                                                                                   AAGCACAGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTA           >  SRR4302535.3033637/1‑94 (MQ=60)
                                                                                         AGACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCA     >  SRR4302535.307756/1‑94 (MQ=60)
                                                                                          GACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGTCTAAGGCATCCGCAA    >  SRR4302535.1257106/1‑94 (MQ=60)
                                                                                           ACCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAAC   <  SRR4302535.3536588/94‑1 (MQ=60)
                                                                                            CCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAACC  <  SRR4302535.317730/94‑1 (MQ=60)
                                                                                            CCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAACC  >  SRR4302535.673261/1‑94 (MQ=60)
                                                                                            CCGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAACC  <  SRR4302535.1079172/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCAAGCACAGACTGCACCATCTGCATTCCTGTCTGACGCTCACGACTGACGGCTTCACTAAGTCGCGCATTCAGCGCCGGAAGCTGGCCTAAGGTATCCGCAACC  >  NC_000913/2115087‑2115272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑