Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,160,323 |
T→C |
L280L (TTG→CTG) |
yegB → |
putative transport protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,160,323 | 0 | T | C | 99.1%
| 363.2
/ NA
| 117 | L280L (TTG→CTG) | yegB | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (50/65); total (52/65) |
| Fisher's exact test for biased strand distribution p-value = 4.40e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 126 total aligned reads displayed.
GTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTTGG > NC_000913/2160234‑2160411
|
gTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTAGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCAtgctgc > 1:3306583/1‑93 (MQ=255)
gCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGccc > 1:1074523/1‑93 (MQ=255)
gCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGccc > 1:1091030/1‑93 (MQ=255)
gCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGATGcct > 1:2263793/1‑92 (MQ=255)
cccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCt > 1:368865/1‑93 (MQ=255)
cccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCt < 1:2386728/93‑1 (MQ=255)
ccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCCTGCTGCCCtt > 1:1066896/1‑93 (MQ=255)
ccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCtt < 1:1350133/93‑1 (MQ=255)
ccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCtt > 2:4137265/1‑93 (MQ=255)
ccTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCtt > 2:568142/1‑93 (MQ=255)
cTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCttt > 2:1562900/1‑93 (MQ=255)
cTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCttt > 1:4682155/1‑93 (MQ=255)
tGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTa > 2:3355190/1‑93 (MQ=255)
tGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTa < 1:4588690/93‑1 (MQ=255)
tGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTa > 1:2561257/1‑93 (MQ=255)
tGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTa < 1:3350736/93‑1 (MQ=255)
ttCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATg < 2:1838103/93‑1 (MQ=255)
tCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGa < 1:3857479/93‑1 (MQ=255)
cAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGac < 1:169657/93‑1 (MQ=255)
cAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGac > 1:4021259/1‑93 (MQ=255)
gTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGacac < 1:1756803/93‑1 (MQ=255)
tGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCgg > 1:2829488/1‑93 (MQ=255)
gAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGt > 2:932607/1‑93 (MQ=255)
aaaCTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGCCGTATTGGCAGTGGCATGCTGCCCTTTATGCCACCGGtt > 1:984804/1‑93 (MQ=255)
aaCTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGttt > 1:232612/1‑93 (MQ=255)
aaCTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGGTGCATGCTGCCCTTTATGACACCGGttt > 2:1014628/1‑93 (MQ=255)
cTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACTTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTc < 2:2980712/93‑1 (MQ=255)
cTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTc > 1:1730818/1‑93 (MQ=255)
cTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTc < 2:2973062/93‑1 (MQ=255)
tGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTcc < 2:1144129/93‑1 (MQ=255)
tGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTcc < 1:840769/93‑1 (MQ=255)
gTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCt < 2:4184082/93‑1 (MQ=255)
ttCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTg < 2:2986485/93‑1 (MQ=255)
tCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGc > 1:3556843/1‑93 (MQ=255)
cGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCaa > 2:2754204/1‑93 (MQ=255)
tACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAAt > 1:3962178/1‑93 (MQ=255)
tACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAAt < 1:2907226/93‑1 (MQ=255)
ccTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAAtt < 2:3847412/92‑1 (MQ=255)
aCTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAAtt > 1:3987904/1‑93 (MQ=255)
cTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTg < 1:87535/93‑1 (MQ=255)
cTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTg < 2:1831937/93‑1 (MQ=255)
cTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTg > 2:336753/1‑93 (MQ=255)
cTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTg < 2:4606666/93‑1 (MQ=255)
tCGTACCTTTTCGCTTGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGTCACCGGTTTTTCTGTAAATTgt > 2:4258062/1‑92 (MQ=255)
tCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTgg > 1:153476/1‑93 (MQ=255)
gTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGcc > 2:1675990/1‑93 (MQ=255)
gTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGcc > 2:1547645/1‑93 (MQ=255)
ccTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCg > 2:4100144/1‑93 (MQ=255)
ccTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCg > 2:1037582/1‑93 (MQ=255)
cTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCgg > 2:3650012/1‑93 (MQ=255)
cTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCgg > 2:526205/1‑93 (MQ=255)
ttttCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGt > 2:1988375/1‑93 (MQ=255)
tttCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGtt < 1:1188051/93‑1 (MQ=255)
tCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtc < 1:3133185/93‑1 (MQ=255)
tCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtc < 2:502502/93‑1 (MQ=255)
tCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtc < 2:3126998/93‑1 (MQ=255)
tCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtc < 2:3279810/93‑1 (MQ=255)
cGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtct < 2:1372269/93‑1 (MQ=255)
cGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtct < 2:2589229/93‑1 (MQ=255)
cGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtct < 2:4481785/93‑1 (MQ=255)
gCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtctc > 1:1026823/1‑93 (MQ=255)
gCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTtctc < 2:1060693/93‑1 (MQ=255)
cTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCg < 2:1429603/93‑1 (MQ=255)
tGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGc > 2:878091/1‑93 (MQ=255)
tGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGc > 2:3317756/1‑93 (MQ=255)
gCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGt < 1:4273123/93‑1 (MQ=255)
gCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGt < 1:747890/93‑1 (MQ=255)
gCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGt < 1:984539/93‑1 (MQ=255)
ggCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCa < 1:296427/93‑1 (MQ=255)
ggCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCa < 2:2096308/93‑1 (MQ=255)
ggCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCa < 2:4375648/93‑1 (MQ=255)
ggggAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTCCATGc < 2:3055662/93‑1 (MQ=255)
gggAGCTTTTCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGcc < 2:1874518/93‑1 (MQ=255)
gggAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGcc > 1:674583/1‑93 (MQ=255)
aGCTTTCCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGa < 2:3027873/93‑1 (MQ=255)
aGCTGTGCCGGACGTATTGGCAGTGGCATGCTGCCGTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGa < 1:4315508/93‑1 (MQ=255)
ttGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACtga > 1:1651619/1‑93 (MQ=255)
tGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACtgat < 1:4407262/93‑1 (MQ=255)
cGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACtgatgat < 2:893435/93‑1 (MQ=255)
ggACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACtgatgatg > 1:1322626/1‑93 (MQ=255)
gACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACtgatgatga > 2:2924830/1‑93 (MQ=255)
cGTATTGGCAGTGGCATTCTTCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATc < 1:3128855/93‑1 (MQ=255)
gTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATcc > 2:3486114/1‑93 (MQ=255)
gTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATcc < 2:1259829/93‑1 (MQ=255)
gTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATcc > 1:806816/1‑93 (MQ=255)
tATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATccc > 2:2817076/1‑93 (MQ=255)
tATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATccc > 1:4275862/1‑93 (MQ=255)
tATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATccc > 1:3922437/1‑93 (MQ=255)
tATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATccc < 2:193481/93‑1 (MQ=255)
ttGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGa < 2:74751/93‑1 (MQ=255)
ggCAGTGGCATGCTGCGCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATg < 2:3915096/93‑1 (MQ=255)
gCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATgg > 2:2542495/1‑93 (MQ=255)
gCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATgg > 2:1443143/1‑93 (MQ=255)
cAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGt > 2:1204944/1‑93 (MQ=255)
gTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGc < 1:524220/93‑1 (MQ=255)
tGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCt < 1:2387530/93‑1 (MQ=255)
tGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCt > 2:1077732/1‑93 (MQ=255)
tGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCt < 1:376667/93‑1 (MQ=255)
gCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTTg < 2:4219832/93‑1 (MQ=255)
cATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTTgg > 2:1851540/1‑93 (MQ=255)
|
GTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTTGG > NC_000913/2160234‑2160411
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTT > NC_000913/2160230‑2160409
|
AACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGC > SRR4302535.538927/1‑94 (MQ=60)
CGTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTAGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGC > SRR4302535.3329591/1‑94 (MQ=60)
TGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCC > SRR4302535.1082163/1‑94 (MQ=60)
TGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCC > SRR4302535.1098804/1‑94 (MQ=60)
TGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGATGCCT > SRR4302535.2279923/1‑94 (MQ=60)
GCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCT > SRR4302535.371412/1‑94 (MQ=60)
CCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCCTGCTGCCCTT > SRR4302535.1074484/1‑94 (MQ=60)
CCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTT < SRR4302535.2403882/94‑1 (MQ=60)
CCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTT < SRR4302535.1131622/94‑1 (MQ=60)
CCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTT > SRR4302535.4713800/1‑94 (MQ=60)
CCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTT < SRR4302535.1359776/94‑1 (MQ=60)
CTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTA < SRR4302535.1602084/94‑1 (MQ=60)
CTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTA > SRR4302535.2579697/1‑94 (MQ=60)
TGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTAT < SRR4302535.4619931/94‑1 (MQ=60)
TGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTAT < SRR4302535.3374077/94‑1 (MQ=60)
TCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGAC > SRR4302535.4048773/1‑94 (MQ=60)
TCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGAC < SRR4302535.3884033/94‑1 (MQ=60)
CAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCGTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACA < SRR4302535.858699/94‑1 (MQ=60)
CAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACA < SRR4302535.170835/94‑1 (MQ=60)
gttgaaaactgttcgggtctcgtgctttttggctgggcggGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACC < SRR4302535.4252363/54‑1 (MQ=60)
GTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACC < SRR4302535.1769504/94‑1 (MQ=60)
CTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGG > SRR4302535.2849572/1‑94 (MQ=60)
GAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGCCGTATTGGCAGTGGCATGCTGCCCTTTATGCCACCGGTT > SRR4302535.991801/1‑94 (MQ=60)
AAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTT > SRR4302535.234217/1‑94 (MQ=60)
AACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTT > SRR4302535.2422028/1‑94 (MQ=60)
ACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTC > SRR4302535.1743330/1‑94 (MQ=60)
TGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCT < SRR4302535.846671/94‑1 (MQ=60)
GTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTG > SRR4302535.2996304/1‑94 (MQ=60)
TTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGC > SRR4302535.3581514/1‑94 (MQ=60)
GTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGGAGTGGGATGCTGCCCTTTATGACACCGGTTTTGCTGCAAAT > SRR4302535.547182/1‑94 (MQ=60)
GTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAAT > SRR4302535.3989240/1‑94 (MQ=60)
TACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATT < SRR4302535.2927774/94‑1 (MQ=60)
TACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATT > SRR4302535.4015173/1‑94 (MQ=60)
CTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGG > SRR4302535.154554/1‑94 (MQ=60)
CTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGG < SRR4302535.88150/94‑1 (MQ=60)
CTTTCGCTGGGCCTGGCGGGGAACTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTT < SRR4302535.3579193/94‑1 (MQ=60)
TTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTT < SRR4302535.1196555/94‑1 (MQ=60)
TCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCT < SRR4302535.3155001/94‑1 (MQ=60)
CGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTC > SRR4302535.1034114/1‑94 (MQ=60)
TGTGCGTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCC < SRR4302535.117658/94‑1 (MQ=60)
GCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTT < SRR4302535.753154/94‑1 (MQ=60)
GCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTT < SRR4302535.991532/94‑1 (MQ=60)
GCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTT < SRR4302535.4302372/94‑1 (MQ=60)
GGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCAT < SRR4302535.298492/94‑1 (MQ=60)
GGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCAT < SRR4302535.380197/94‑1 (MQ=60)
GGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCAT < SRR4302535.2112506/94‑1 (MQ=60)
GGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCC > SRR4302535.679297/1‑94 (MQ=60)
AGCTGTGCCGGACGTATTGGCAGTGGCATGCTGCCGTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGAC < SRR4302535.4345028/94‑1 (MQ=60)
CTTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTG > SRR4302535.4017095/1‑94 (MQ=60)
TTTGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGA > SRR4302535.1663562/1‑94 (MQ=60)
TGCCGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATG < SRR4302535.4437423/94‑1 (MQ=60)
CGGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATG > SRR4302535.1332067/1‑94 (MQ=60)
GGACGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCgcaaaattgccccgggtttttgccgttttaatcccggactgtggtgaa > SRR4302535.442043/1‑46 (MQ=60)
CGTATTGGCAGTGGCATTCTTCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCC < SRR4302535.3150644/94‑1 (MQ=60)
CGTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCC > SRR4302535.812474/1‑94 (MQ=60)
GTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCC > SRR4302535.3949248/1‑94 (MQ=60)
GTATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCC > SRR4302535.4305130/1‑94 (MQ=60)
TATTGGCAGTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCG > SRR4302535.4352387/1‑94 (MQ=60)
GTGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCT < SRR4302535.527882/94‑1 (MQ=60)
TGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTT < SRR4302535.379280/94‑1 (MQ=60)
TGGCATGCTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTT < SRR4302535.2404695/94‑1 (MQ=60)
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AACCGTGCCCTGTTCAGTCTGAAACTGTTCCGTACTCGTACCTTTTCGCTGGGCCTGGCGGGGAGCTTTGCCGGACGTATTGGCAGTGGCATGTTGCCCTTTATGACACCGGTTTTCCTGCAAATTGGCCTCGGTTTCTCGCCGTTTCATGCCGGACTGATGATGATCCCGATGGTGCTT > NC_000913/2160230‑2160409
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
