Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,204,258 |
T→C |
W182R (TGG→CGG) |
yehM → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,204,258 | 0 | T | C | 99.2%
| 368.2
/ ‑4.7
| 122 | W182R (TGG→CGG) | yehM | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (57/64); total (57/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.72e-01 |
Only 100 of 147 total aligned reads displayed.
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC > NC_000913/2204168‑2204347
|
cccTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcgg > 2:3207350/1‑93 (MQ=255)
ccTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcgga > 1:4231857/1‑93 (MQ=255)
ctctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat < 1:3687649/93‑1 (MQ=255)
ctctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggat > 2:1456380/1‑93 (MQ=255)
tctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggatt > 2:1754644/1‑93 (MQ=255)
ctGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattg > 1:1755832/1‑93 (MQ=255)
gcgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattgga < 2:711622/93‑1 (MQ=255)
gcgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattgga < 2:1072458/93‑1 (MQ=255)
cgcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCcggattggat < 1:2599257/93‑1 (MQ=255)
gcTGGCGCCCTATTTTGCCCAGCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg < 2:2725314/93‑1 (MQ=255)
gcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg < 1:129534/93‑1 (MQ=255)
gcTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATg < 2:1637530/93‑1 (MQ=255)
cTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATgg < 1:2828178/93‑1 (MQ=255)
cTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATgg > 1:152654/1‑93 (MQ=255)
tGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATggg < 2:825760/93‑1 (MQ=255)
ggCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGc < 2:2536260/93‑1 (MQ=255)
gcgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCg > 1:2124348/1‑93 (MQ=255)
gcgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCg > 1:2124349/1‑93 (MQ=255)
gcgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCg < 2:4204586/93‑1 (MQ=255)
cgcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGa < 2:1718791/93‑1 (MQ=255)
gcACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGAt < 2:723924/93‑1 (MQ=255)
ccTATTTTGCCCAACGGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgc < 2:2232275/92‑1 (MQ=255)
aCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgc < 2:542209/93‑1 (MQ=255)
aCTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgc > 1:781692/1‑93 (MQ=255)
cTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgca > 2:896539/1‑93 (MQ=255)
tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag > 2:766880/1‑93 (MQ=255)
tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag < 2:2945248/93‑1 (MQ=255)
tATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcag > 1:3348118/1‑93 (MQ=255)
aTTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagc < 1:1195799/93‑1 (MQ=255)
aTTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATgcagc > 1:639772/1‑93 (MQ=255)
ttttGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGCTGGGAGATgcagca > 2:1436002/1‑93 (MQ=255)
tttGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCTCCGGATTGGATGGGCGATGCAGCaa > 2:4081652/1‑93 (MQ=255)
tGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCaaaa < 2:3484874/93‑1 (MQ=255)
gCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaat > 1:2057448/1‑93 (MQ=255)
ccAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataa < 1:1043837/93‑1 (MQ=255)
ccAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataa < 2:3760874/93‑1 (MQ=255)
ccAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataa < 1:853852/93‑1 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat > 2:2287147/1‑93 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat > 2:2169659/1‑93 (MQ=255)
cAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAaataat < 1:4101342/93‑1 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTTTGGCCCGCCGGATTGGATGGTCGATGCAGCAAAATAATg < 2:785607/93‑1 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATg < 1:1462825/93‑1 (MQ=255)
aaCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATg < 2:1367908/93‑1 (MQ=255)
aCTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATgg < 1:3628642/93‑1 (MQ=255)
tGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCCCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCg < 1:2937171/93‑1 (MQ=255)
cGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGGGATGCAGCAAAAAAATGGGGag > 2:3630899/1‑92 (MQ=255)
cGGGGAGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGGTGCAGCAAAATAATGGCGAc > 2:3375160/1‑93 (MQ=255)
ggccGCTTCCGGCGATGCGATTATTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACgtgtg < 2:2925991/90‑2 (MQ=255)
gACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGttt > 2:4082956/1‑92 (MQ=255)
gACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTa > 2:2234263/1‑93 (MQ=255)
gACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTa < 1:1964488/93‑1 (MQ=255)
aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAg < 1:2943844/93‑1 (MQ=255)
aCGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAg > 2:23272/1‑93 (MQ=255)
cGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGt < 2:2648132/93‑1 (MQ=255)
gCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtt > 2:4473542/1‑93 (MQ=255)
gCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGtt > 2:2915492/1‑93 (MQ=255)
ccTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTg > 2:1380527/1‑93 (MQ=255)
cTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGt > 1:527922/1‑93 (MQ=255)
cTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGt > 2:3716840/1‑93 (MQ=255)
tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc > 1:2791762/1‑93 (MQ=255)
tCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTc < 1:4198101/93‑1 (MQ=255)
ccGGCGATGCTCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCt < 2:1319807/93‑1 (MQ=255)
ccGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCt < 2:1319806/93‑1 (MQ=255)
ggCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGc > 1:1804492/1‑93 (MQ=255)
gCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCg > 2:4077972/1‑93 (MQ=255)
cGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCgg < 1:3044327/93‑1 (MQ=255)
gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGt > 1:4410385/1‑93 (MQ=255)
gATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGt > 2:213839/1‑93 (MQ=255)
tGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtgg > 2:2777992/1‑93 (MQ=255)
gcgcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggc > 2:3383700/1‑93 (MQ=255)
gcgcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGAATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggc < 2:1653176/93‑1 (MQ=255)
gcTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctg > 1:1350984/1‑93 (MQ=255)
cTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctgg < 1:946907/93‑1 (MQ=255)
cTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctgg < 2:310085/93‑1 (MQ=255)
cTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGCCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctgc > 1:982294/1‑92 (MQ=255)
tCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGtggctggc < 2:4555449/93‑1 (MQ=255)
cAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCa > 1:3797259/1‑93 (MQ=255)
aaTCGTCAGCGCGAAGCCTTTATGGACCGCCGGATTGGAAGGGCGATTCAGCAAAATAATGGCGACGAGTTTGTTGTCTGCGTATGCTGGCAc > 2:4609553/1‑93 (MQ=255)
aTCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACg > 1:1170138/1‑93 (MQ=255)
tCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGc > 2:1610090/1‑93 (MQ=255)
tCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGc < 2:2676359/93‑1 (MQ=255)
tCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTcc < 1:2153045/93‑1 (MQ=255)
aGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCgg < 1:3790770/93‑1 (MQ=255)
aGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCgc > 1:1871111/1‑92 (MQ=255)
cgcgAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCa < 2:4282922/93‑1 (MQ=255)
gAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTg < 1:2593262/93‑1 (MQ=255)
aaGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTgg > 2:1949765/1‑93 (MQ=255)
cTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCaaa > 2:3403375/1‑93 (MQ=255)
tttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAg > 2:496611/1‑93 (MQ=255)
tttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAg > 1:2025357/1‑93 (MQ=255)
ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa < 2:1930036/93‑1 (MQ=255)
ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa < 1:1689077/93‑1 (MQ=255)
ttATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGa > 1:4181341/1‑93 (MQ=255)
tATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAt > 1:1640715/1‑93 (MQ=255)
tATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAt < 1:4101139/93‑1 (MQ=255)
tGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAtgt < 2:1915395/93‑1 (MQ=255)
tGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAtgt < 2:2057448/93‑1 (MQ=255)
ggCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAtgtg < 2:3763361/93‑1 (MQ=255)
gCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCACCGGCACTGGCAAAGATGTgg < 2:2986050/93‑1 (MQ=255)
cGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGgcgc > 2:4436682/1‑93 (MQ=255)
|
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGC > NC_000913/2204168‑2204347
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT > NC_000913/2204165‑2204351
|
TTACCCTCTGCGCTGGCGCACTATTTTGGCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCC > SRR4302535.708045/1‑94 (MQ=60)
TACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCG > SRR4302535.2267182/1‑94 (MQ=60)
TACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCG < SRR4302535.2800049/94‑1 (MQ=60)
TACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCG < SRR4302535.2279144/94‑1 (MQ=60)
ACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGG < SRR4302535.1754885/94‑1 (MQ=60)
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGA > SRR4302535.4260818/1‑94 (MQ=60)
CCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGA < SRR4302535.3538428/94‑1 (MQ=60)
CTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATT < SRR4302535.3713164/94‑1 (MQ=60)
TCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTG > SRR4302535.1768523/1‑94 (MQ=60)
GCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGAT < SRR4302535.1874151/94‑1 (MQ=60)
CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAATCCTTTATGGCCCGCCGGATTGGATG < SRR4302535.3803601/94‑1 (MQ=60)
CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATG < SRR4302535.4197119/94‑1 (MQ=60)
CGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATG < SRR4302535.2617918/94‑1 (MQ=60)
GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG > SRR4302535.153725/1‑94 (MQ=60)
GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG < SRR4302535.130447/94‑1 (MQ=60)
GCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGG < SRR4302535.1239358/94‑1 (MQ=60)
CTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGG < SRR4302535.2848249/94‑1 (MQ=60)
GGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCG > SRR4302535.2139661/1‑94 (MQ=60)
GGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCG > SRR4302535.2139660/1‑94 (MQ=60)
CACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGC > SRR4302535.787179/1‑94 (MQ=60)
CTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAG > SRR4302535.3371441/1‑94 (MQ=60)
TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC > SRR4302535.852515/1‑94 (MQ=60)
TATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGC > SRR4302535.644243/1‑94 (MQ=60)
ATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCA < SRR4302535.1204365/94‑1 (MQ=60)
TGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAAT > SRR4302535.2072270/1‑94 (MQ=60)
TCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATA < SRR4302535.2253990/94‑1 (MQ=60)
CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT < SRR4302535.1051236/94‑1 (MQ=60)
CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT > SRR4302535.59401/1‑94 (MQ=60)
CCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAAT < SRR4302535.859866/94‑1 (MQ=60)
CAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATG < SRR4302535.4129422/94‑1 (MQ=60)
AACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGG < SRR4302535.1473305/94‑1 (MQ=60)
ACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGC < SRR4302535.3653792/94‑1 (MQ=60)
TGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCCCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGA < SRR4302535.2957835/94‑1 (MQ=60)
GGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGT > SRR4302535.1717900/1‑94 (MQ=60)
GGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGT < SRR4302535.962305/94‑1 (MQ=60)
GACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAG < SRR4302535.1978650/94‑1 (MQ=60)
ACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGT < SRR4302535.2964538/94‑1 (MQ=60)
CCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGT > SRR4302535.531609/1‑94 (MQ=60)
CTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTC > SRR4302535.2811629/1‑94 (MQ=60)
TCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCT < SRR4302535.1614749/94‑1 (MQ=60)
TCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCT < SRR4302535.4226827/94‑1 (MQ=60)
CGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGC > SRR4302535.1817534/1‑94 (MQ=60)
CGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGT < SRR4302535.3065652/94‑1 (MQ=60)
CGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGT > SRR4302535.4440568/1‑94 (MQ=60)
gtgtcaatccgCAGCGCGAAGGCTTTATGGCCCGCCGGAATGGAAGGGCCATGCAACAAAATAATTGCGACGTGGTAGTTGTCTGCGGTGGCTG < SRR4302535.1866190/83‑1 (MQ=44)
CGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTG > SRR4302535.1360657/1‑94 (MQ=60)
GCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGCCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGC > SRR4302535.989274/1‑94 (MQ=60)
CTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGC < SRR4302535.953616/94‑1 (MQ=60)
TCAATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCA > SRR4302535.3823434/1‑94 (MQ=60)
AATCGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACG > SRR4302535.1178495/1‑94 (MQ=60)
CGTCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTC < SRR4302535.2966002/94‑1 (MQ=60)
TCAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCG < SRR4302535.2168520/94‑1 (MQ=60)
CAGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGC > SRR4302535.1884596/1‑94 (MQ=60)
AGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGC < SRR4302535.3816909/94‑1 (MQ=60)
AGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGC > SRR4302535.4023529/1‑94 (MQ=60)
AGCGCGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGC > SRR4302535.4376542/1‑94 (MQ=60)
CGAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTG > SRR4302535.2733647/1‑94 (MQ=60)
GAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGG < SRR4302535.2611891/94‑1 (MQ=60)
GAAGCCTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGG < SRR4302535.2088847/94‑1 (MQ=60)
CTTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAG > SRR4302535.2039952/1‑94 (MQ=60)
TTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGA < SRR4302535.2023510/94‑1 (MQ=60)
TTTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGA > SRR4302535.4209956/1‑94 (MQ=60)
TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT < SRR4302535.1701301/94‑1 (MQ=60)
TTATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGAT > SRR4302535.1652575/1‑94 (MQ=60)
TATGGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATG < SRR4302535.4129218/94‑1 (MQ=60)
GGCCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGG < SRR4302535.2879684/94‑1 (MQ=60)
CCCGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCG < SRR4302535.1447222/94‑1 (MQ=60)
CACGCCGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGCCTGCGGTGGCTGGAAGGCTCCGGCACcggaaaagaggggggg > SRR4302535.1329511/1‑78 (MQ=60)
CGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT < SRR4302535.902896/94‑1 (MQ=60)
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TTACCCTCTGCGCTGGCGCACTATTTTGCCCAACTGCGGGGCGACGCCTCCGGCGATGCGCTCAATCGTCAGCGCGAAGCCTTTATGGCCCGCTGGATTGGATGGGCGATGCAGCAAAATAATGGCGACGTGTTAGTTGTCTGCGGTGGCTGGCACGCTCCGGCACTGGCAAAGATGTGGCGCGAAT > NC_000913/2204165‑2204351
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
