Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 1873 183.1 9376148 98.2% 9207377 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,242,918 A→G T624T (ACT→ACC)  cirA ← CirA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,242,9180AG100.0% 522.2 / NA 161T624T (ACT→ACC) cirACirA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (91/70);  total (91/70)

Only 100 of 164 total aligned reads displayed.

ACGACGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTAGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATA  >  NC_000913/2242828‑2243007
                                                                                          |                                                                                         
acgacgTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGt                                                                                         <  1:1508600/93‑1 (MQ=255)
 cgacgTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTc                                                                                        <  2:853153/93‑1 (MQ=255)
   acgTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCAc                                                                                      >  2:3510342/1‑93 (MQ=255)
   acgTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCAc                                                                                      >  2:4257418/1‑93 (MQ=255)
    cgtccgtcTACGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCAcc                                                                                     <  2:690487/93‑1 (MQ=255)
     gtccgtcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCt                                                                                    >  1:680021/1‑93 (MQ=255)
     gtccgtcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCt                                                                                    <  1:1909948/93‑1 (MQ=255)
      tccgtcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTg                                                                                   >  1:4134921/1‑93 (MQ=255)
        cgtcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGcc                                                                                 <  1:1945265/93‑1 (MQ=255)
         gtcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCa                                                                                >  1:945595/1‑93 (MQ=255)
          tcTTCGTTATAGCTGTGGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAg                                                                               <  2:331964/93‑1 (MQ=255)
          tcTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAg                                                                               >  1:1634900/1‑93 (MQ=255)
           cTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAgg                                                                              >  1:957923/1‑93 (MQ=255)
            ttCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGc                                                                             >  2:4503247/1‑93 (MQ=255)
            ttCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGc                                                                             >  2:3862423/1‑93 (MQ=255)
             tCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGcc                                                                            <  1:1707361/93‑1 (MQ=255)
              cGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCcg                                                                           >  1:4018735/1‑93 (MQ=255)
               gTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCcgc                                                                          <  1:1046811/93‑1 (MQ=255)
               gTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCcgc                                                                          >  2:2358045/1‑93 (MQ=255)
                ttATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCcgcg                                                                         >  1:4226831/1‑93 (MQ=255)
                ttATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCcgcg                                                                         <  1:542089/93‑1 (MQ=255)
                 tataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCgcgc                                                                        <  2:21028/93‑1 (MQ=255)
                 tataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCgcgc                                                                        >  1:4616599/1‑93 (MQ=255)
                 tataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCgcgc                                                                        <  2:2681432/93‑1 (MQ=255)
                  ataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGcc                                                                       >  1:2698142/1‑93 (MQ=255)
                  ataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGcc                                                                       >  1:4200235/1‑93 (MQ=255)
                  ataGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGcc                                                                       >  1:4456446/1‑93 (MQ=255)
                      cTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGATCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTa                                                                   >  1:2439510/1‑93 (MQ=255)
                       tGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAt                                                                  >  2:3931332/1‑93 (MQ=255)
                       tGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAt                                                                  >  1:4076477/1‑93 (MQ=255)
                       tGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCAGGTAt                                                                  >  1:4267776/1‑93 (MQ=255)
                        gTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAtt                                                                 <  1:753154/93‑1 (MQ=255)
                        gTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAtt                                                                 >  1:358861/1‑93 (MQ=255)
                         tAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTc                                                                >  1:1825428/1‑93 (MQ=255)
                         tAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTc                                                                <  2:1834758/93‑1 (MQ=255)
                         tAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTc                                                                >  2:637940/1‑93 (MQ=255)
                           gtcgtcACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCa                                                              <  1:3196343/93‑1 (MQ=255)
                           gtcgtcACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCa                                                              <  2:4154561/93‑1 (MQ=255)
                               tcACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATg                                                          <  1:1483524/93‑1 (MQ=255)
                               tcACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATg                                                          >  1:1380189/1‑93 (MQ=255)
                                cACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATgg                                                         <  1:3267406/93‑1 (MQ=255)
                                 aCGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGt                                                        <  2:3710297/93‑1 (MQ=255)
                                 aCGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGt                                                        >  2:4310013/1‑93 (MQ=255)
                                   gACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGtat                                                      >  1:12466/1‑93 (MQ=255)
                                     cTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATaa                                                    >  1:3523371/1‑93 (MQ=255)
                                     cTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATaa                                                    >  2:1139519/1‑93 (MQ=255)
                                      tGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCAGCGCCGGTATTCCCGATGTTATCAc                                                   >  2:359678/1‑93 (MQ=255)
                                       gagaTCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAAcc                                                  >  2:191115/1‑93 (MQ=255)
                                       gagaTCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAAcc                                                  <  2:101975/93‑1 (MQ=255)
                                       gagaTCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAAcc                                                  <  1:3494306/93‑1 (MQ=255)
                                        agaTCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCg                                                 >  2:221164/1‑93 (MQ=255)
                                          aTCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGcc                                               >  2:240892/1‑93 (MQ=255)
                                           tCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGccc                                              <  2:3783373/93‑1 (MQ=255)
                                           tCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGccc                                              <  1:701319/93‑1 (MQ=255)
                                            ccTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCg                                             >  1:1700727/1‑93 (MQ=255)
                                             cTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCgg                                            >  1:4420178/1‑93 (MQ=255)
                                              ttGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGgt                                           <  2:1044616/93‑1 (MQ=255)
                                               tGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGgtg                                          <  2:3955757/93‑1 (MQ=255)
                                               tGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGgtg                                          >  1:1797121/1‑93 (MQ=255)
                                                gTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGgtgt                                         <  2:3799438/93‑1 (MQ=255)
                                                 tCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGtt                                        <  2:3278663/93‑1 (MQ=255)
                                                  cGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGttt                                       <  2:1274343/93‑1 (MQ=255)
                                                  cGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGttt                                       <  1:3148863/93‑1 (MQ=255)
                                                   gCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGACGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGtttt                                      >  2:4214082/1‑93 (MQ=255)
                                                    ccAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTa                                     <  2:3116623/93‑1 (MQ=255)
                                                    ccAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTa                                     >  1:416605/1‑93 (MQ=255)
                                                    ccAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTa                                     >  1:2136491/1‑93 (MQ=255)
                                                     cAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCTCCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAg                                    >  1:400876/1‑93 (MQ=255)
                                                       aGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGcc                                  <  1:365306/93‑1 (MQ=255)
                                                       aGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGcc                                  <  2:1645162/93‑1 (MQ=255)
                                                          ttCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACGGCCCGGTGTTTTAGCCGTc                               <  2:4546928/93‑1 (MQ=255)
                                                          ttCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTc                               <  1:1873530/93‑1 (MQ=255)
                                                          ttCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTc                               >  2:4033059/1‑93 (MQ=255)
                                                             aGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTcgcg                            >  2:4509723/1‑93 (MQ=255)
                                                              gCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCgcgc                           <  1:3746387/93‑1 (MQ=255)
                                                              gCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCgcgc                           >  2:429770/1‑93 (MQ=255)
                                                                aCGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGCATAACCGCCCGCTGTTTTAGCCGTCgcgccg                         >  2:2199456/1‑91 (MQ=255)
                                                                aCGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGACGGTATTCCAGATGGTATAACCGCCCGGTGATTTAGCCGTCGCGCTg                         >  1:2879269/1‑93 (MQ=255)
                                                                aCGCCTCCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCGGGCATTCCCGTTGGTATAACCGCCCGGTGTTGTAGCCGTGGCGCTg                         >  2:1556112/1‑93 (MQ=255)
                                                                 cGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGt                        <  1:2693966/93‑1 (MQ=255)
                                                                 cGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGt                        <  1:4514460/93‑1 (MQ=255)
                                                                  gCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTc                       >  2:234456/1‑93 (MQ=255)
                                                                   ccTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCg                      >  2:2390705/1‑93 (MQ=255)
                                                                    cTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGCCGCGCTGTCgg                     >  1:4313761/1‑93 (MQ=255)
                                                                     tGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGgc                    >  1:4039825/1‑93 (MQ=255)
                                                                     tGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGgc                    >  2:1373484/1‑93 (MQ=255)
                                                                      gcgcgcAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGgcg                   <  1:3885612/93‑1 (MQ=255)
                                                                       cgcgcAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGgcgc                  <  2:1152630/93‑1 (MQ=255)
                                                                          gcAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGtt               >  1:1186734/1‑93 (MQ=255)
                                                                            aGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGtttt             >  2:2440495/1‑92 (MQ=255)
                                                                            aGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTc             >  1:2227831/1‑93 (MQ=255)
                                                                            aGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTc             >  2:3533194/1‑93 (MQ=255)
                                                                            aGTTTGACGTCTGTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTc             <  1:2072397/93‑1 (MQ=255)
                                                                                  aCGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCg       <  1:3490517/93‑1 (MQ=255)
                                                                                   cGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCgg      >  2:3161439/1‑93 (MQ=255)
                                                                                    gTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGt     <  1:1435502/93‑1 (MQ=255)
                                                                                    gTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGt     >  1:794505/1‑93 (MQ=255)
                                                                                     tCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGta    <  2:1739030/93‑1 (MQ=255)
                                                                                     tCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGta    >  1:4654103/1‑93 (MQ=255)
                                                                                       tttGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGtata  >  1:3546127/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACGACGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTAGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATA  >  NC_000913/2242828‑2243007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGACGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTAGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATAGTG  >  NC_000913/2242828‑2243010
                                                                                          |                                                                                            
ACGACGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTC                                                                                           <  SRR4302535.1519444/94‑1 (MQ=60)
    CGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCT                                                                                       >  SRR4302535.684785/1‑94 (MQ=60)
     GTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTG                                                                                      <  SRR4302535.1923715/94‑1 (MQ=60)
     GTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTG                                                                                      >  SRR4302535.4163236/1‑94 (MQ=60)
        CGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCA                                                                                   >  SRR4302535.3801578/1‑94 (MQ=60)
        CGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCA                                                                                   >  SRR4302535.1754182/1‑94 (MQ=60)
        CGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCA                                                                                   <  SRR4302535.1959268/94‑1 (MQ=60)
        CGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCA                                                                                   >  SRR4302535.689844/1‑94 (MQ=60)
        CGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCA                                                                                   >  SRR4302535.952291/1‑94 (MQ=60)
         GTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAG                                                                                  >  SRR4302535.1646714/1‑94 (MQ=60)
         GTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGAGCGCAGTTTGACGTCTTTGGTCACCTGCCAG                                                                                  >  SRR4302535.1838393/1‑94 (MQ=60)
          TCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGG                                                                                 >  SRR4302535.964726/1‑94 (MQ=60)
            TTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCC                                                                               <  SRR4302535.959224/94‑1 (MQ=60)
             TCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCG                                                                              >  SRR4302535.4046231/1‑94 (MQ=60)
             TCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCG                                                                              <  SRR4302535.1719705/94‑1 (MQ=60)
               GTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCG                                                                            >  SRR4302535.4255757/1‑94 (MQ=60)
               GTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCG                                                                            <  SRR4302535.1054232/94‑1 (MQ=60)
                TTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGC                                                                           >  SRR4302535.4647974/1‑94 (MQ=60)
                TTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGC                                                                           <  SRR4302535.4461510/94‑1 (MQ=60)
                TTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGC                                                                           <  SRR4302535.545875/94‑1 (MQ=60)
                 TATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCC                                                                          >  SRR4302535.4487008/1‑94 (MQ=60)
                 TATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCC                                                                          >  SRR4302535.4228978/1‑94 (MQ=60)
                 TATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCC                                                                          >  SRR4302535.2717424/1‑94 (MQ=60)
                    AGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGG                                                                       >  SRR4302535.1637300/1‑94 (MQ=60)
                     GCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGATCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTA                                                                      >  SRR4302535.2457084/1‑94 (MQ=60)
                      CTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAT                                                                     >  SRR4302535.4441671/1‑94 (MQ=60)
                      CTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAT                                                                     >  SRR4302535.2113834/1‑94 (MQ=60)
                      CTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTAT                                                                     >  SRR4302535.4104369/1‑94 (MQ=60)
                      CTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCAGGTAT                                                                     >  SRR4302535.4296996/1‑94 (MQ=60)
                       TGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATT                                                                    >  SRR4302535.361345/1‑94 (MQ=60)
                       TGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATT                                                                    >  SRR4302535.1243496/1‑94 (MQ=60)
                        GTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTC                                                                   <  SRR4302535.3643877/94‑1 (MQ=60)
                        GTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTC                                                                   <  SRR4302535.758456/94‑1 (MQ=60)
                        GTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTC                                                                   >  SRR4302535.1838605/1‑94 (MQ=60)
                          AGTCGTCACGACTGAGATCCTTGTCGCCAAGGGTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCGCCTGACAGGCCGCGggggctttccg                                                                 >  SRR4302535.991039/1‑83 (MQ=60)
                           GTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAG                                                                <  SRR4302535.3218462/94‑1 (MQ=60)
                            TCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGA                                                               <  SRR4302535.1674734/94‑1 (MQ=60)
                              GTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATG                                                             >  SRR4302535.3605908/1‑94 (MQ=60)
                              GTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATG                                                             <  SRR4302535.1405251/94‑1 (MQ=60)
                              GTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATG                                                             >  SRR4302535.2589158/1‑94 (MQ=60)
                              GTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATG                                                             >  SRR4302535.1390032/1‑94 (MQ=60)
                               gccCGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGG                                                            <  SRR4302535.207029/91‑1 (MQ=60)
                               TCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGG                                                            <  SRR4302535.4072221/94‑1 (MQ=60)
                               TCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGG                                                            <  SRR4302535.1494136/94‑1 (MQ=60)
                                CACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGT                                                           <  SRR4302535.3290103/94‑1 (MQ=60)
                                CACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGT                                                           <  SRR4302535.970313/94‑1 (MQ=60)
                                CACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGT                                                           >  SRR4302535.3491997/1‑94 (MQ=60)
                                 ACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTA                                                          <  SRR4302535.774432/94‑1 (MQ=60)
                                  CGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTAT                                                         >  SRR4302535.12559/1‑94 (MQ=60)
                                   GACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGACAGGCCGCGCCGGTATTCCAGATGGTATA                                                        >  SRR4302535.2290721/1‑94 (MQ=60)
                                    ACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAA                                                       >  SRR4302535.3547840/1‑94 (MQ=60)
                                       GAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCG                                                    <  SRR4302535.3518585/94‑1 (MQ=60)
                                          ATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGTTATTCCAGATGGTATAACCGCCC                                                 <  SRR4302535.3828878/94‑1 (MQ=60)
                                           TCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCG                                                <  SRR4302535.706236/94‑1 (MQ=60)
                                           TCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCG                                                >  SRR4302535.1713019/1‑94 (MQ=60)
                                            CCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGG                                               >  SRR4302535.4450443/1‑94 (MQ=60)
                                             CTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGT                                              <  SRR4302535.1469580/94‑1 (MQ=60)
                                              TTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTG                                             >  SRR4302535.1810113/1‑94 (MQ=60)
                                                  CGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTT                                         <  SRR4302535.3170754/94‑1 (MQ=60)
                                                  CGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTT                                         >  SRR4302535.400610/1‑94 (MQ=60)
                                                   GCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTA                                        >  SRR4302535.4239927/1‑94 (MQ=60)
                                                   GCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTA                                        >  SRR4302535.2151882/1‑94 (MQ=60)
                                                   GCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTA                                        >  SRR4302535.419523/1‑94 (MQ=60)
                                                    CCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCTCCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAG                                       >  SRR4302535.403686/1‑94 (MQ=60)
                                                    CCAAGGTCCAGCCCGCCTGCGCGCAGTTTGACTTCTTTGGTCTCCTGCCAGGCCTCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAG                                       <  SRR4302535.2452787/94‑1 (MQ=60)
                                                      AAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCC                                     <  SRR4302535.297759/94‑1 (MQ=60)
                                                       AGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCG                                    <  SRR4302535.367818/94‑1 (MQ=60)
                                                          TTCAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCG                                 <  SRR4302535.1887031/94‑1 (MQ=60)
                                                            CAGCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCG                               >  SRR4302535.4256200/1‑94 (MQ=60)
                                                              GCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCT                             <  SRR4302535.3772305/94‑1 (MQ=60)
                                                              GCACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCT                             <  SRR4302535.2876671/94‑1 (MQ=60)
                                                               CACGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGACGGTATTCCAGATGGTATAACCGCCCGGTGATTTAGCCGTCGCGCTG                            >  SRR4302535.2899654/1‑94 (MQ=60)
                                                                 CGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTC                          <  SRR4302535.4545415/94‑1 (MQ=60)
                                                                 CGCCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTC                          <  SRR4302535.2713218/94‑1 (MQ=60)
                                                                   CCTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGCCGCGCTGTCGG                        >  SRR4302535.4343268/1‑94 (MQ=60)
                                                                    CTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGC                       <  SRR4302535.683933/94‑1 (MQ=60)
                                                                    CTGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGC                       >  SRR4302535.4067479/1‑94 (MQ=60)
                                                                     TGCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCG                      <  SRR4302535.4661867/94‑1 (MQ=60)
                                                                      GCGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGC                     <  SRR4302535.3912264/94‑1 (MQ=60)
                                                                       CGCGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCG                    <  SRR4302535.3519181/94‑1 (MQ=60)
                                                                         CGCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTT                  >  SRR4302535.1195214/1‑94 (MQ=60)
                                                                          GCAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTT                 <  SRR4302535.4587716/94‑1 (MQ=60)
                                                                           CAGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTC                >  SRR4302535.2243680/1‑94 (MQ=60)
                                                                            AGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGgtttt               >  SRR4302535.3219604/1‑89 (MQ=60)
                                                                            AGTTTGACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCT               >  SRR4302535.4055430/1‑94 (MQ=60)
                                                                            AGTTTGACGTCTGTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCT               <  SRR4302535.2087329/94‑1 (MQ=60)
                                                                                  ACGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGG         <  SRR4302535.3514774/94‑1 (MQ=60)
                                                                                   CGTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGT        >  SRR4302535.800086/1‑94 (MQ=60)
                                                                                    GTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTA       >  SRR4302535.4685610/1‑94 (MQ=60)
                                                                                    GTCTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTA       <  SRR4302535.1445758/94‑1 (MQ=60)
                                                                                      CTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATA     >  SRR4302535.4169701/1‑94 (MQ=60)
                                                                                      CTTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATA     >  SRR4302535.3570749/1‑94 (MQ=60)
                                                                                       TTTGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATAG    <  SRR4302535.1907115/94‑1 (MQ=60)
                                                                                         TGGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATAGTG  <  SRR4302535.3949618/94‑1 (MQ=60)
                                                                                          |                                                                                            
ACGACGTCCGTCTTCGTTATAGCTGTAGTCGTCACGACTGAGATCCTTGTCGCCAAGGTTCAGCACGCCTGCGCGCAGTTTGACGTCTTTAGTCACCTGCCAGGCCGCGCCGGTATTCCAGATGGTATAACCGCCCGGTGTTTTAGCCGTCGCGCTGTCGGCGCGTTTCTGCCCGGTATAGTG  >  NC_000913/2242828‑2243010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑