Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
1873 |
183.1 |
9376148 |
98.2% |
9207377 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,286,581 |
(C)7→6 |
coding (340/2511 nt) |
yejO ← |
putative ATP‑binding component of a transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,286,575 | 0 | C | . | 96.1%
| 422.5
/ 9.2
| 103 | coding (346/2511 nt) | yejO | putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base C (3/1); new base . (54/44); total (58/45) |
| Fisher's exact test for biased strand distribution p-value = 6.28e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.91e-01 |
Only 100 of 123 total aligned reads displayed.
AATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGC > NC_000913/2286483‑2286663
|
aaTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGc > 1:2195458/1‑93 (MQ=255)
aTAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGcc > 1:4256779/1‑93 (MQ=255)
tAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccc < 1:4099859/93‑1 (MQ=255)
tAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccc > 2:3040873/1‑93 (MQ=255)
tAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccc < 1:665680/93‑1 (MQ=255)
gCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccc > 1:3608159/1‑93 (MQ=255)
ccGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccccat > 2:2606767/1‑91 (MQ=255)
cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccccatc > 1:4308836/1‑90 (MQ=255)
cGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccccatc > 1:4445372/1‑90 (MQ=255)
gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGccccccatct > 2:80209/1‑89 (MQ=255)
gCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTACGATAGCGACAAAGACGGccccccatct < 1:2426348/93‑5 (MQ=255)
ccTGCTTTCTGATCTTCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCtt < 1:1488108/93‑1 (MQ=255)
ccTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCtt < 1:4581232/93‑1 (MQ=255)
tGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCtttt > 1:1789680/1‑93 (MQ=255)
tGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCtttt > 2:3680852/1‑93 (MQ=255)
gCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACACAGACGG‑CCCACCATCttttt > 1:2781877/1‑93 (MQ=255)
gCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCttttt > 2:2328671/1‑93 (MQ=255)
gCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCttttt < 1:2406396/93‑1 (MQ=255)
cTTTCTGATCTACCGCCAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTACTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTc > 2:3744990/1‑93 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa > 1:951601/1‑93 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa > 1:4111927/1‑93 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa > 2:429572/1‑93 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa > 1:768002/1‑93 (MQ=255)
tttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCa > 1:1858574/1‑93 (MQ=255)
ttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCaa > 1:1786563/1‑93 (MQ=255)
ttCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCaa < 2:4588371/93‑1 (MQ=255)
tGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAA‑ACCGGCCCCCCATCTTTTTCAACGa > 2:4406103/1‑93 (MQ=255)
gATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGAt < 2:2529591/93‑1 (MQ=255)
tACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAg > 1:1616970/1‑93 (MQ=255)
aCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAg < 2:3163800/93‑1 (MQ=255)
cGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAgcgc > 1:2143229/1‑93 (MQ=255)
gcaaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcc < 1:1099543/93‑1 (MQ=255)
aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcccg > 1:2346085/1‑93 (MQ=255)
aaatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑‑CCCCCATCTTTTTCAAAGATTAAGcgcccgc > 2:482196/1‑93 (MQ=255)
aatgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGcgcccgc > 2:1004969/1‑93 (MQ=255)
tgcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCt < 1:2536346/93‑1 (MQ=255)
tgcaaacCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCt < 2:3453340/93‑1 (MQ=255)
gcaaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCtt < 1:4110377/93‑1 (MQ=255)
aaatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTa < 2:4389635/93‑1 (MQ=255)
aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTaa > 1:3619517/1‑93 (MQ=255)
aatCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTGTTTCAACGATTAAACGCCCCACtttca > 1:3619516/1‑91 (MQ=255)
atCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAAt < 2:3773240/93‑1 (MQ=255)
tCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATc < 2:141345/93‑1 (MQ=255)
ccccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCg < 1:742077/93‑1 (MQ=255)
cccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGt < 2:4510024/93‑1 (MQ=255)
cccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGt < 1:1096053/93‑1 (MQ=255)
ccccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTg < 1:1275897/93‑1 (MQ=255)
cccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTgg < 2:337012/93‑1 (MQ=255)
cccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTgg > 2:1321563/1‑93 (MQ=255)
ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt < 2:1551124/93‑1 (MQ=255)
ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt > 2:117875/1‑93 (MQ=255)
ccTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGt < 1:868876/93‑1 (MQ=255)
ctctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTa > 2:2009982/1‑93 (MQ=255)
tctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTAt > 2:634991/1‑93 (MQ=255)
tctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTAt > 2:2109520/1‑93 (MQ=255)
ctTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATc < 1:3835643/93‑1 (MQ=255)
tttAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCa > 1:4551765/1‑93 (MQ=255)
tttAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCa > 1:4331259/1‑93 (MQ=255)
ttAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAt > 2:3667284/1‑93 (MQ=255)
tAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCAtt < 2:3050507/93‑1 (MQ=255)
aCCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCg > 1:1064462/1‑93 (MQ=255)
ccTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGc < 1:2043247/93‑1 (MQ=255)
tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg > 2:302132/1‑93 (MQ=255)
tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg > 2:2896240/1‑93 (MQ=255)
tCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTg > 2:2142097/1‑93 (MQ=255)
ccAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgc < 1:2534713/93‑1 (MQ=255)
cAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcg > 1:2528686/1‑93 (MQ=255)
agtagtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTgcgc > 2:1015644/1‑93 (MQ=255)
gtagtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGcc < 2:3873567/93‑1 (MQ=255)
tagtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCa < 1:2043692/93‑1 (MQ=255)
agtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt > 2:3481974/1‑93 (MQ=255)
agtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt > 1:1590788/1‑93 (MQ=255)
agtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAt < 1:2510068/93‑1 (MQ=255)
gtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATa > 2:3897673/1‑93 (MQ=255)
gtCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATa > 1:282785/1‑93 (MQ=255)
tcctccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATaa > 2:4072220/1‑93 (MQ=255)
ctccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc > 2:3039748/1‑93 (MQ=255)
ctccCTTTGCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAc < 2:1151011/93‑1 (MQ=255)
tccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc < 2:2883267/93‑1 (MQ=255)
tccCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAcc > 2:3576441/1‑93 (MQ=255)
ctttttCGATATCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTg < 2:1086686/91‑1 (MQ=255)
ccTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTg > 1:2809538/1‑93 (MQ=255)
ttttCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTa < 1:2740054/93‑1 (MQ=255)
tttCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAg < 1:3680852/93‑1 (MQ=255)
tgcGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGc < 1:553648/91‑1 (MQ=255)
cGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGcac < 1:1831033/93‑1 (MQ=255)
aGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCa > 1:2274741/1‑93 (MQ=255)
gCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCat < 1:284425/93‑1 (MQ=255)
aCAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattat > 1:1906855/1‑93 (MQ=255)
aCAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattat < 1:1247655/93‑1 (MQ=255)
aCAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattat > 1:4613425/1‑93 (MQ=255)
cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt > 1:3997549/1‑93 (MQ=255)
cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt < 2:347485/93‑1 (MQ=255)
cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt < 2:3159701/93‑1 (MQ=255)
cAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCattatt < 2:513841/93‑1 (MQ=255)
aaaGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTg > 1:1584670/1‑93 (MQ=255)
aaGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTg > 2:1984432/1‑93 (MQ=255)
aaGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa > 2:294274/1‑93 (MQ=255)
aaGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGa > 2:2265185/1‑93 (MQ=255)
gACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGc < 1:975916/93‑1 (MQ=255)
|
AATAGCACCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGC > NC_000913/2286483‑2286663
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTT > NC_000913/2286490‑2286674
|
CCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATC > SRR4302535.4475858/1‑94 (MQ=60)
CCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATC > SRR4302535.3163875/1‑94 (MQ=60)
CCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATC > SRR4302535.4338314/1‑94 (MQ=60)
GCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTT > SRR4302535.968638/1‑94 (MQ=60)
GCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTACGATAGCGACAAAGACGG‑CCCCCCATCTT < SRR4302535.2443830/94‑1 (MQ=60)
CCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTT < SRR4302535.1559528/94‑1 (MQ=60)
CCTGCTTTCTGATCTTCCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTT < SRR4302535.1498776/94‑1 (MQ=60)
CCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTT < SRR4302535.4612430/94‑1 (MQ=60)
CTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTT > SRR4302535.1802626/1‑94 (MQ=60)
TGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACACAGACGG‑CCCACCATCTTTTT > SRR4302535.2801681/1‑94 (MQ=60)
GCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTC < SRR4302535.2423719/94‑1 (MQ=60)
CTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCA > SRR4302535.958347/1‑94 (MQ=60)
CTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCA > SRR4302535.4140070/1‑94 (MQ=60)
CTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCA > SRR4302535.1871977/1‑94 (MQ=60)
CTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCA > SRR4302535.773408/1‑94 (MQ=60)
TTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAA > SRR4302535.1799489/1‑94 (MQ=60)
CTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAG > SRR4302535.1628620/1‑94 (MQ=60)
CCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGC > SRR4302535.2158647/1‑94 (MQ=60)
GCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCC < SRR4302535.1107398/94‑1 (MQ=60)
CAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCG > SRR4302535.2362898/1‑94 (MQ=60)
TGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTT < SRR4302535.2554615/94‑1 (MQ=60)
GCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTT < SRR4302535.4138516/94‑1 (MQ=60)
AAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAA > SRR4302535.3644610/1‑94 (MQ=60)
AAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTGTTTCAACGATTAAACGCCCcactttca > SRR4302535.3644609/1‑86 (MQ=60)
ATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATC > SRR4302535.278018/1‑94 (MQ=60)
TCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCG > SRR4302535.1958084/1‑94 (MQ=60)
CCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGT < SRR4302535.747289/94‑1 (MQ=60)
CCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGT > SRR4302535.4229865/1‑94 (MQ=60)
CCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTG < SRR4302535.1103854/94‑1 (MQ=60)
CCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGG < SRR4302535.1285005/94‑1 (MQ=60)
CCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAGCGATTAAGCGCCCGCCTTTAATCGTGGTA < SRR4302535.2246334/94‑1 (MQ=60)
CCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTA < SRR4302535.875026/94‑1 (MQ=60)
CCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTA < SRR4302535.3847342/94‑1 (MQ=60)
CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCA > SRR4302535.4360880/1‑94 (MQ=60)
CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCA < SRR4302535.3862091/94‑1 (MQ=60)
CTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCA > SRR4302535.4582872/1‑94 (MQ=60)
TAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTC > SRR4302535.1286241/1‑94 (MQ=60)
AACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCG > SRR4302535.1072036/1‑94 (MQ=60)
CCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCT < SRR4302535.2057967/94‑1 (MQ=60)
CCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCG > SRR4302535.2546905/1‑94 (MQ=60)
CCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCG < SRR4302535.2552971/94‑1 (MQ=60)
TAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAT > SRR4302535.1602266/1‑94 (MQ=60)
TAGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCAT < SRR4302535.2058414/94‑1 (MQ=60)
AGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATA > SRR4302535.284756/1‑94 (MQ=60)
AGTCCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATA < SRR4302535.2528162/94‑1 (MQ=60)
CCTCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAAC > SRR4302535.1722505/1‑94 (MQ=60)
TCCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCT > SRR4302535.4501640/1‑94 (MQ=60)
CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTG > SRR4302535.2829512/1‑94 (MQ=60)
CCCTTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGACCGCCTTTAATCGTGGTATCATTGGCTGCGCCATAAAGCTG > SRR4302535.2464889/1‑94 (MQ=60)
TTTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAG < SRR4302535.2759587/94‑1 (MQ=60)
TTTCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGC < SRR4302535.3706326/94‑1 (MQ=60)
TGCGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCA < SRR4302535.557522/94‑1 (MQ=60)
CGATAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACA < SRR4302535.1844247/94‑1 (MQ=60)
ATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACAC > SRR4302535.614416/1‑94 (MQ=60)
TAGCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCA > SRR4302535.2290975/1‑94 (MQ=60)
GCGACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATT < SRR4302535.286412/94‑1 (MQ=60)
GACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTAT > SRR4302535.1920579/1‑94 (MQ=60)
GACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTAT > SRR4302535.4644767/1‑94 (MQ=60)
ACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATT < SRR4302535.1256555/94‑1 (MQ=60)
ACAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATT > SRR4302535.4024900/1‑94 (MQ=60)
CAAAGACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTG > SRR4302535.1596102/1‑94 (MQ=60)
GACGG‑CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCG < SRR4302535.982844/94‑1 (MQ=60)
CCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTC > SRR4302535.3893546/1‑94 (MQ=60)
CCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTG > SRR4302535.577675/1‑94 (MQ=60)
CCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTG < SRR4302535.1013973/94‑1 (MQ=60)
CCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGG > SRR4302535.3364709/1‑94 (MQ=60)
CCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGT > SRR4302535.4572003/1‑94 (MQ=60)
CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTT > SRR4302535.2101885/1‑94 (MQ=60)
CATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTT > SRR4302535.4240550/1‑94 (MQ=60)
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CCGCCTGCTTTCTGATCTACCGCAAATGCAAATCCCCCCTCTTTAACCTCCAGTAGTCCTCCCTTTTCGATAGCGACAAAGACGGCCCCCCCATCTTTTTCAACGATTAAGCGCCCGCCTTTAATCGTGGTATCATTCGCTGCGCCATAAACCTGTAGCACACCATTATTGAGCGTAGTCTGGTT > NC_000913/2286490‑2286674
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
